Rmu_sc0000171.1_g000004

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000171.1
OG0000470
Physical Location & Seq
Reverse (-)
22936 .. 23828
893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000171.1_g000004.1.cds

Sequence Viewer

Length: 219 bp
atggctagttttcatgaggtatcaggtaaggatccgaggcctgagctcgtcggagccaaggcgacagaggcggaggcaaaaattgagagcgagaatgatttagtcaaggttgtcatcgtgaaagaaggatcatatgtcactgatgattttcggtgtaatagggttcgagtttcggtcgataaacacggcaccgtcaccagggtccccacaagtggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

72

Amino Acids

7.84

Weight (kDa)

6.07

Isoelectric Point (pI)

15.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 1 cut(s) 71
AclWI GGATC 3 cut(s) 26, 39, 136
AfiI CCNNNNNNNGG 2 cut(s) 198, 212
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw21I GWGCWC 1 cut(s) 48
AlwI GGATC 3 cut(s) 26, 39, 136
AoxI GGCC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 202
BamHI GGATCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 199
BfaI CTAG 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 5 cut(s) 33, 55, 190, 203, 204
BmrFI CCNGG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 35, 57, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 212
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 35, 57, 198
BseLI CCNNNNNNNGG 2 cut(s) 198, 212
BseMII CTCAG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 198, 212
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 31, 128
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 5 cut(s) 33, 55, 190, 203, 204
BspPI GGATC 3 cut(s) 26, 39, 136
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 3 cut(s) 35, 57, 198
BssMI GATC 2 cut(s) 31, 128
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 42
BstKTI GATC 2 cut(s) 34, 131
BstMBI GATC 2 cut(s) 31, 128
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 138
CciI TCATGA 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 1 cut(s) 14
CviJI RGCY 4 cut(s) 5, 40, 46, 56
CviKI_1 RGCY 4 cut(s) 5, 40, 46, 56
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 33, 130
DpnII GATC 2 cut(s) 31, 128
EciI GGCGGA 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 17
FaiI YATR 3 cut(s) 15, 133, 135
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 13
FauNDI CATATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 48
FspBI CTAG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 40
Hin1II CATG 1 cut(s) 17
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 36, 53
Hpy188III TCNNGA 2 cut(s) 14, 118
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 1 cut(s) 17
KflI GGGWCCC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 31, 128
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 9, 54, 184, 211
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 136, 193
MalI GATC 2 cut(s) 33, 130
MboI GATC 2 cut(s) 31, 128
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 4 cut(s) 10, 30, 61, 67
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeI CATATG 1 cut(s) 133
NdeII GATC 2 cut(s) 31, 128
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 5 cut(s) 33, 55, 190, 203, 204
NmuCI GTSAC 2 cut(s) 136, 193
PagI TCATGA 1 cut(s) 13
PceI AGGCCT 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 5 cut(s) 33, 55, 190, 203, 204
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
PsuI RGATCY 1 cut(s) 31
SacI GAGCTC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 31, 128
Sau96I GGNCC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 48
SetI ASST 4 cut(s) 21, 28, 48, 111
SinI GGWCC 1 cut(s) 202
Sse9I AATT 1 cut(s) 81
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 166, 177
TaqII GACCGA 1 cut(s) 163
TasI AATT 1 cut(s) 81
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 136, 193
Tsp45I GTSAC 2 cut(s) 136, 193
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 202
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.