FvH4_4g02860

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000470
Physical Location & Seq
Forward (+)
2561233 .. 2562001
769 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02860.t1

Sequence Viewer

Length: 219 bp
ATGTCTGATCAATGCCAATCCGAAGGTAAGAGTTCATGGCCTGAACTGTTGGGAGCTCAAGGAACAGATGCGAAGGCAACGATTGAGAGCGAAAACTCTTCAGTCACGGCAGTGATCGTGCAAGAAGGATCGATTGTCACTCAAGACATCCGGTGTGATAGAGTTCGCGTTTGGGTCGACTCCTATGGTATTGTCACCAGGGTTCCTATCATCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

73

Amino Acids

7.84

Weight (kDa)

4.46

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 10 - 71 8.4e-26 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 168
AclWI GGATC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 84
AjnI CCWGG 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 1 cut(s) 136
AoxI GGCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 187
BanII GRGCYC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 42, 126
Bsa29I ATCGAT 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 147, 210
BseNI ACTGG 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 40
BshVI ATCGAT 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 151
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 3 cut(s) 7, 114, 128
BspANI GGCC 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 131
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 7, 114, 128
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 103
BstF5I GGATG 2 cut(s) 147, 210
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 3 cut(s) 10, 117, 131
BstMBI GATC 3 cut(s) 7, 114, 128
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstUI CGCG 1 cut(s) 168
Bsu15I ATCGAT 1 cut(s) 131
BsuRI GGCC 1 cut(s) 40
BsuTUI ATCGAT 1 cut(s) 131
BtsCI GGATG 2 cut(s) 147, 210
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
ClaI ATCGAT 1 cut(s) 131
CviAII CATG 1 cut(s) 36
CviJI RGCY 2 cut(s) 40, 56
CviKI_1 RGCY 2 cut(s) 40, 56
DpnI GATC 3 cut(s) 9, 116, 130
DpnII GATC 3 cut(s) 7, 114, 128
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 1 cut(s) 39
FaiI YATR 2 cut(s) 37, 186
FatI CATG 1 cut(s) 35
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 177
FokI GGATG 2 cut(s) 134, 197
FriOI GRGCYC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 151
Hin1II CATG 1 cut(s) 39
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 151
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 7, 22
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 17, 67, 119
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 121
Hsp92II CATG 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 114, 128
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 54, 164, 184, 211
LweI GCATC 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 103, 136, 193
MalI GATC 3 cut(s) 9, 116, 130
MboI GATC 3 cut(s) 7, 114, 128
MboII GAAGA 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 58
MlyI GAGTC 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 168
NdeII GATC 3 cut(s) 7, 114, 128
NlaIII CATG 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 3 cut(s) 103, 136, 193
OliI CACNNNNGTG 1 cut(s) 110
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 58
SalI GTCGAC 1 cut(s) 176
Sau3AI GATC 3 cut(s) 7, 114, 128
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 58
SetI ASST 2 cut(s) 28, 58
SfaNI GCATC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 57, 141
SmoI CTYRAG 2 cut(s) 57, 141
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 131, 177
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 3 cut(s) 103, 136, 193
Tsp45I GTSAC 3 cut(s) 103, 136, 193
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.