Prupe.1G032400_v2.0.a1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000470
Physical Location & Seq
Forward (+)
2273495 .. 2274083
589 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G032400.1

Sequence Viewer

Length: 231 bp
ATGGCATCTGATCAATGTCAAGGCAGCACAGGTAAGTATGTATGGCCTGAGCTGCTGGGAGTGGAGGGGACAGTTGCGGAGGCAACAATTGAGAGGGAGAATTCTACCGTCAAAGTTGAGGTGGTGTTGGAAGGAACCATTGTCCCCGCAGATTTCGTATGCGTACCTGATAGGGTTCGTGTTTGGGTCGACACAGATGGCTTGGTTACTAGGGTTCCTGTAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

77

Amino Acids

8.19

Weight (kDa)

4.31

Isoelectric Point (pI)

11.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AciI CCGC 2 cut(s) 77, 147
AcsI RAATTY 1 cut(s) 100
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 24, 52
ApoI RAATTY 1 cut(s) 100
BbvI GCAGC 2 cut(s) 36, 39
BccI CCATC 1 cut(s) 191
BclI TGATCA 1 cut(s) 10
BfaI CTAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 25, 53
BlsI GCNGC 2 cut(s) 26, 54
BmiI GGNNCC 2 cut(s) 136, 216
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 36, 39
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 46
BslFI GGGAC 2 cut(s) 82, 128
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 82, 128
BsnI GGCC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 77, 147
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 136, 216
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 73, 109
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 36, 39
BsuRI GGCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 164
CviJI RGCY 3 cut(s) 46, 52, 201
CviKI_1 RGCY 3 cut(s) 46, 52, 201
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 100
FaiI YATR 3 cut(s) 39, 43, 160
FaqI GGGAC 2 cut(s) 82, 128
FauI CCCGC 1 cut(s) 154
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 25, 53
Fsp4HI GCNGC 2 cut(s) 25, 53
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 25, 53
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 73, 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 15, 41, 60, 180
Lsp1109I GCAGC 2 cut(s) 36, 39
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MfeI CAATTG 1 cut(s) 87
MluCI AATT 3 cut(s) 87, 100, 222
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 4 cut(s) 58, 73, 87, 112
MseI TTAA 1 cut(s) 229
MunI CAATTG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 136, 216
PkrI GCNGC 2 cut(s) 26, 54
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 136, 216
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 229
SatI GCNGC 2 cut(s) 25, 53
Sau3AI GATC 1 cut(s) 10
SetI ASST 4 cut(s) 34, 54, 123, 169
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 9 cut(s) 32, 42, 59, 68, 158, 179, 191, 214, 222
Sse9I AATT 3 cut(s) 87, 100, 222
SsiI CCGC 2 cut(s) 77, 147
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 73, 109
TaqI TCGA 1 cut(s) 189
TasI AATT 3 cut(s) 87, 100, 222
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TseI GCWGC 2 cut(s) 24, 52
XapI RAATTY 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.