AT5G43580

inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000470
Physical Location & Seq
Reverse (-)
17507801 .. 17508752
952 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43580.1

Sequence Viewer

Length: 300 bp
ATGTTTGTCATTGTGGAGAAGAACCCAATACAAAACTCAAATCACAAAAATCTACAAATCAATACATTTATTCAAGAAAAGATGGCAAGCATATGCGAAGATCCAGGAAAAAGCTCATGGCCAGAGCTTTTGGGGGCAAAAGGAGAAGATGCAAAAGAAGTGATCGAGAGAGAGAATCCAAAAATGAAAGCAGTTATCATTTTGGATGGAACAGTTGTTCCGGAGATCTTTATTTGCTCTCGTGTTTACGTTTGGGTCAACGATTGCGGAATCGTTGTTCAAATTCCTATCATCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

99

Amino Acids

11.08

Weight (kDa)

5.07

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 37 - 99 1.4e-23 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 74, 281
AjnI CCWGG 1 cut(s) 103
AloI GAACNNNNNNTCC 6 cut(s) 201, 202, 233, 234, 261, 293
AluBI AGCT 2 cut(s) 114, 127
AluI AGCT 2 cut(s) 114, 127
AlwI GGATC 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 282
BalI TGGCCA 1 cut(s) 121
BauI CACGAG 1 cut(s) 240
BccI CCATC 2 cut(s) 76, 200
BciT130I CCWGG 1 cut(s) 105
BglII AGATCT 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 293
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 293
BsnI GGCC 1 cut(s) 121
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 3 cut(s) 100, 162, 225
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 121
BspEI TCCGGA 1 cut(s) 220
BspPI GGATC 1 cut(s) 95
BssMI GATC 3 cut(s) 100, 162, 225
BssSI CACGAG 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 3 cut(s) 103, 165, 228
BstMBI GATC 3 cut(s) 100, 162, 225
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstX2I RGATCY 2 cut(s) 100, 225
BstYI RGATCY 2 cut(s) 100, 225
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 88
CviAII CATG 1 cut(s) 117
CviJI RGCY 3 cut(s) 114, 121, 127
CviKI_1 RGCY 3 cut(s) 114, 121, 127
DpnI GATC 3 cut(s) 102, 164, 227
DpnII GATC 3 cut(s) 100, 162, 225
EaeI YGGCCR 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 120
FaiI YATR 3 cut(s) 92, 94, 118
FatI CATG 1 cut(s) 116
FauNDI CATATG 1 cut(s) 92
FokI GGATG 1 cut(s) 218
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 221
Hin1II CATG 1 cut(s) 120
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 2 cut(s) 175, 270
HpaII CCGG 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 247, 259
Hpy188III TCNNGA 3 cut(s) 74, 166, 221
Hpy8I GTNNAC 2 cut(s) 247, 259
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 1 cut(s) 120
Kpn2I TCCGGA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 100, 162, 225
LpnPI CCDG 4 cut(s) 90, 117, 135, 234
LweI GCATC 1 cut(s) 139
MaeII ACGT 1 cut(s) 249
MalI GATC 3 cut(s) 102, 164, 227
MboI GATC 3 cut(s) 100, 162, 225
MboII GAAGA 3 cut(s) 31, 110, 158
MflI RGATCY 2 cut(s) 100, 225
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 1 cut(s) 282
MluNI TGGCCA 1 cut(s) 121
Mox20I TGGCCA 1 cut(s) 121
MroI TCCGGA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 121
MseI TTAA 1 cut(s) 298
Msp20I TGGCCA 1 cut(s) 121
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 92
NdeII GATC 3 cut(s) 100, 162, 225
NlaIII CATG 1 cut(s) 120
PfeI GAWTC 2 cut(s) 175, 270
PfoI TCCNGGA 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PsuI RGATCY 2 cut(s) 100, 225
SaqAI TTAA 1 cut(s) 298
Sau3AI GATC 3 cut(s) 100, 162, 225
ScrFI CCNGG 1 cut(s) 105
SetI ASST 3 cut(s) 116, 129, 252
SfaNI GCATC 1 cut(s) 139
Sse9I AATT 1 cut(s) 282
SsiI CCGC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 282
TfiI GAWTC 2 cut(s) 175, 270
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 200
XapI RAATTY 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.