Prupe.1G032000_v2.0.a1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000470
Physical Location & Seq
Forward (+)
2250308 .. 2250750
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G032000.1

Sequence Viewer

Length: 213 bp
ATGTCGTCTGAATGTGAAGGTAAGGATTCATGGCCCGAGCTCGTTGGAGACGAGGGGAAGGACGCCGCTGCAACGATTGAGAGCGAGAATCATTTGGTGAATGCTGTGATTGTGAAAGAAGGAACATTTGTCACTGCTGATTTTCGATGCGATAGGGTTCGAGTTTGGGTCAATAAACGTGGCATTGTTACCAAGGTTCCTATAATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.67

Weight (kDa)

4.99

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 35
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 42
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 42
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 33
CseI GACGC 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 1 cut(s) 30
CviJI RGCY 3 cut(s) 34, 40, 210
CviKI_1 RGCY 3 cut(s) 34, 40, 210
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 1 cut(s) 33
FaiI YATR 2 cut(s) 31, 203
FatI CATG 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 66, 69
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 66, 69
GluI GCNGC 2 cut(s) 66, 69
HaeIII GGCC 1 cut(s) 34
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 33
HinfI GANTC 2 cut(s) 26, 88
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 11, 52, 113
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 178
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 137
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 2 cut(s) 130, 187
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 1 cut(s) 46
MspA1I CMGCKG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 26, 88
PkrI GCNGC 2 cut(s) 67, 70
Psp124BI GAGCTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 33
SacI GAGCTC 1 cut(s) 42
SatI GCNGC 2 cut(s) 66, 69
Sau96I GGNCC 1 cut(s) 33
SduI GDGCHC 1 cut(s) 42
SetI ASST 4 cut(s) 22, 42, 181, 198
SfaNI GCATC 1 cut(s) 137
SgeI CNNG 9 cut(s) 42, 47, 49, 53, 64, 97, 173, 191, 205
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 66
SstI GAGCTC 1 cut(s) 42
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 145, 160
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 2 cut(s) 26, 88
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.