FvH4_4g02850

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000470
Physical Location & Seq
Forward (+)
2544931 .. 2545500
570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02850.t1

Sequence Viewer

Length: 321 bp
ATGAAGCTCTCGTTTCCTCATTTCCAAGGATCCAACCCACAGCAAACATATTACAAGAGATTCATCACAGAGAGTAAAACTCAGGATTTAAAGAACGCAAAGATGGCCGGACAATGCGTAGGTAAGGAAGATTGGCCTGAACTGTTGGGAGCTGAAGGGACAGTTGCAAAGGAAACAATTGAGAGGGAAAACTCTACAGTTAAGGCAGAGATCGTGCTCGAAGGAACAATTGTCCCTGCAGATTTAGTGAGAGTGTGTGATAGGGTTCGTGTTTGGGTTGATACATGTGGCATTGTTACCAGGGTGCCTACCATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

107

Amino Acids

11.83

Weight (kDa)

6.57

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 42 - 106 3.8e-21 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AclWI GGATC 2 cut(s) 24, 37
AcoI YGGCCR 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 284
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 2 cut(s) 7, 152
AluI AGCT 2 cut(s) 7, 152
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 2 cut(s) 24, 37
AoxI GGCC 2 cut(s) 105, 134
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 301
BfmI CTRYAG 2 cut(s) 195, 237
Bme1390I CCNGG 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 31, 306
BmrFI CCNGG 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BsaJI CCNNGG 2 cut(s) 25, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 25, 300
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 95
BshFI GGCC 2 cut(s) 107, 136
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 2 cut(s) 172, 218
BslI CCNNNNNNNGG 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 172, 218
BsnI GGCC 2 cut(s) 107, 136
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 29, 210
BspANI GGCC 2 cut(s) 107, 136
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 31, 306
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 2 cut(s) 24, 37
BspT107I GGYRCC 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 25, 300
BssMI GATC 2 cut(s) 29, 210
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 3 cut(s) 144, 163, 199
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 2 cut(s) 32, 213
BstMBI GATC 2 cut(s) 29, 210
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 2 cut(s) 195, 237
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 2 cut(s) 107, 136
CviAII CATG 1 cut(s) 285
CviJI RGCY 4 cut(s) 7, 107, 136, 152
CviKI_1 RGCY 4 cut(s) 7, 107, 136, 152
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 31, 212
DpnII GATC 2 cut(s) 29, 210
DraI TTTAAA 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 288
FaiI YATR 2 cut(s) 49, 286
FaqI GGGAC 2 cut(s) 172, 218
FatI CATG 1 cut(s) 284
HaeIII GGCC 2 cut(s) 107, 136
HapII CCGG 1 cut(s) 108
Hin1II CATG 1 cut(s) 288
HinfI GANTC 1 cut(s) 60
HpaII CCGG 1 cut(s) 108
Hpy188III TCNNGA 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 149, 215
HpyCH4III ACNGT 3 cut(s) 144, 163, 199
HpyCH4V TGCA 2 cut(s) 167, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 288
Kzo9I GATC 2 cut(s) 29, 210
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 6 cut(s) 68, 121, 150, 249, 286, 313
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 31, 212
MboI GATC 2 cut(s) 29, 210
MboII GAAGA 1 cut(s) 140
MfeI CAATTG 2 cut(s) 177, 228
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 177, 228
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 2 cut(s) 27, 177
MseI TTAA 3 cut(s) 89, 201, 319
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 301
MunI CAATTG 2 cut(s) 177, 228
MvaI CCWGG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 29, 210
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 2 cut(s) 31, 306
NspI RCATGY 1 cut(s) 288
PciI ACATGT 1 cut(s) 284
PfeI GAWTC 1 cut(s) 60
PscI ACATGT 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 31, 306
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 29
SaqAI TTAA 3 cut(s) 89, 201, 319
Sau3AI GATC 2 cut(s) 29, 210
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 219
SetI ASST 3 cut(s) 9, 124, 154
SfcI CTRYAG 2 cut(s) 195, 237
Sse9I AATT 2 cut(s) 177, 228
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 3 cut(s) 144, 163, 199
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 177, 228
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 3 cut(s) 89, 201, 319
Tru9I TTAA 3 cut(s) 89, 201, 319
TspDTI ATGAA 2 cut(s) 17, 52
XceI RCATGY 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.