MD16G1210400.v1.1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000470
Physical Location & Seq
Forward (+)
19891713 .. 19891925
213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1210400.v1.1.491

Sequence Viewer

Length: 213 bp
ATGTCATTTGAATGTGAAGGGAAGGATACATGGCCCGAGCTTGTCGGAGCCAAGGGGAAGGAGGCGGAGGCAACAATTGAGAGTGAGAATCGTTTAGTCAACGCTGTGATTGTGAAAGAAGGAATGTTTGTCACTACGGATTTTCGATATGATGGGGTTCGAGTTTGGGTCAATAAACATGGCATTGTTACCAGGGTCCCTGCAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.78

Weight (kDa)

5.29

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 70 3.8e-23 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 33, 196
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 196
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 193
BciVI GTATCC 1 cut(s) 19
BfuI GTATCC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 33, 196
BmiI GGNNCC 3 cut(s) 49, 197, 198
BmrFI CCNGG 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 51, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 51, 192
BseLI CCNNNNNNNGG 1 cut(s) 206
BshFI GGCC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 35
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 49, 197, 198
BssECI CCNNGG 2 cut(s) 51, 192
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 193
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 33, 196
CviAII CATG 2 cut(s) 30, 179
CviJI RGCY 3 cut(s) 34, 40, 50
CviKI_1 RGCY 3 cut(s) 34, 40, 50
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 33, 182
FaiI YATR 3 cut(s) 31, 150, 180
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 29, 178
HaeIII GGCC 1 cut(s) 34
Hin1II CATG 2 cut(s) 33, 182
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 4 cut(s) 11, 16, 52, 113
HpyCH4V TGCA 1 cut(s) 203
Hsp92II CATG 2 cut(s) 33, 182
KflI GGGWCCC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 178, 205
MaeIII GTNAC 2 cut(s) 130, 187
MfeI CAATTG 2 cut(s) 75, 204
MluCI AATT 2 cut(s) 75, 204
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 2 cut(s) 55, 61
MseI TTAA 1 cut(s) 211
MslI CAYNNNNRTG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 2 cut(s) 75, 204
MvaI CCWGG 1 cut(s) 193
NlaIII CATG 2 cut(s) 33, 182
NlaIV GGNNCC 3 cut(s) 49, 197, 198
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 49, 197, 198
PspPI GGNCC 2 cut(s) 33, 196
PspPPI RGGWCCY 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 10
SaqAI TTAA 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 33, 196
ScrFI CCNGG 1 cut(s) 193
SetI ASST 1 cut(s) 42
SgeI CNNG 9 cut(s) 42, 47, 49, 53, 64, 173, 191, 204, 205
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 10
Sse9I AATT 2 cut(s) 75, 204
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 51
TaqI TCGA 2 cut(s) 145, 160
TasI AATT 2 cut(s) 75, 204
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 211
Tru9I TTAA 1 cut(s) 211
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspGWI ACGGA 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.