pycom13g18060

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000470
Physical Location & Seq
Forward (+)
14044776 .. 14045110
335 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g18060.2

Sequence Viewer

Length: 213 bp
ATGTCGTCTGAGTGTGAAGGTAAGGCTTCATGGCCTGAACTATTGGGGACTCAGGGGACAGTTGCAGAGGCAACAATTGAGAGGGAGAATCCTTTGGTCGACGCCGTGATTGTGCTACAAGGAACAAATGTCACCCGCGACTTCCGGTGTGATAGGGTTCGTGTTTGGGTCGACGTAGTCGGAATTGTTGTCGACGTCCCTGTAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.6

Weight (kDa)

4.37

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccI GTMKAC 3 cut(s) 99, 171, 192
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 136
AcyI GRCGYC 2 cut(s) 102, 195
AfiI CCNNNNNNNGG 1 cut(s) 206
AoxI GGCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 124
BceAI ACGGC 1 cut(s) 89
BsaHI GRCGYC 2 cut(s) 102, 195
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 3 cut(s) 61, 70, 182
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 61, 70, 182
BsnI GGCC 1 cut(s) 34
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 64
BspFNI CGCG 1 cut(s) 138
BssNI GRCGYC 2 cut(s) 102, 195
Bst4CI ACNGT 1 cut(s) 61
BstACI GRCGYC 2 cut(s) 102, 195
BstDEI CTNAG 2 cut(s) 9, 51
BstFNI CGCG 1 cut(s) 138
BstUI CGCG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 34
CseI GACGC 1 cut(s) 110
CviAII CATG 1 cut(s) 30
CviJI RGCY 2 cut(s) 26, 34
CviKI_1 RGCY 2 cut(s) 26, 34
DdeI CTNAG 2 cut(s) 9, 51
FaeI CATG 1 cut(s) 33
FaiI YATR 1 cut(s) 31
FaqI GGGAC 3 cut(s) 61, 70, 182
FatI CATG 1 cut(s) 29
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 3 cut(s) 99, 171, 192
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 2 cut(s) 102, 195
Hin1II CATG 1 cut(s) 33
HincII GTYRAC 3 cut(s) 100, 172, 193
HindII GTYRAC 3 cut(s) 100, 172, 193
HinfI GANTC 2 cut(s) 49, 88
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 3 cut(s) 100, 172, 193
Hpy188I TCNGA 2 cut(s) 10, 182
Hpy8I GTNNAC 3 cut(s) 100, 172, 193
Hpy99I CGWCG 3 cut(s) 104, 176, 197
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 174, 195
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 9, 51
HpySE526I ACGT 2 cut(s) 174, 195
Hsp92I GRCGYC 2 cut(s) 102, 195
Hsp92II CATG 1 cut(s) 33
LpnPI CCDG 3 cut(s) 38, 48, 158
MaeII ACGT 2 cut(s) 174, 195
MaeIII GTNAC 1 cut(s) 130
MfeI CAATTG 1 cut(s) 75
MluCI AATT 3 cut(s) 75, 183, 204
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 2 cut(s) 61, 75
MseI TTAA 1 cut(s) 211
MspI CCGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 75
MvnI CGCG 1 cut(s) 138
NlaIII CATG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 88
PflFI GACNNNGTC 1 cut(s) 176
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 176
SalI GTCGAC 3 cut(s) 98, 170, 191
SaqAI TTAA 1 cut(s) 211
SchI GAGTC 1 cut(s) 43
SetI ASST 3 cut(s) 22, 177, 198
SgeI CNNG 9 cut(s) 42, 47, 65, 118, 131, 147, 149, 157, 173
Sse9I AATT 3 cut(s) 75, 183, 204
SsiI CCGC 1 cut(s) 136
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 177, 198
TaqI TCGA 3 cut(s) 99, 171, 192
TasI AATT 3 cut(s) 75, 183, 204
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 211
Tru9I TTAA 1 cut(s) 211
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 176
XmiI GTMKAC 3 cut(s) 99, 171, 192
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.