MD16G1210300.v1.1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000470
Physical Location & Seq
Forward (+)
19888558 .. 19888951
394 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1210300.v1.1.491

Sequence Viewer

Length: 231 bp
ATGGCATCTGATCCATGTGAGGGTACTGAAGGTAAGTATGTATGGCCTGAGCTGTTAGTAGCCGAGGGTATGGTTGCGGAGGCAACAATTAAGAGGGAGAATTCCACTGTCAACATTGAAATCGTGGTAGAAGGAACCATTTTACCAGCAGATTTCCGATGTGTAGCTGATAGGGTTCGAGTTTGGTTCGATACAGATGGCTTTGTTACCAGGGAACTTGTAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

77

Amino Acids

8.42

Weight (kDa)

4.33

Isoelectric Point (pI)

29.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 12 - 76 2.6e-15 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 209
AjuI GAANNNNNNNTTGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 52, 167
AluI AGCT 2 cut(s) 52, 167
AlwI GGATC 1 cut(s) 5
AoxI GGCC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 100
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 63, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 63, 210
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 63, 210
BssMI GATC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BsuRI GGCC 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 105
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 15
CviJI RGCY 5 cut(s) 46, 52, 62, 167, 201
CviKI_1 RGCY 5 cut(s) 46, 52, 62, 167, 201
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 209
FaeI CATG 1 cut(s) 18
FaiI YATR 4 cut(s) 16, 39, 43, 71
FatI CATG 1 cut(s) 14
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 1 cut(s) 18
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 10, 158
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 23, 125
HpyCH4III ACNGT 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 18
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 60, 159, 196, 223
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MluCI AATT 3 cut(s) 87, 100, 222
MnlI CCTC 4 cut(s) 13, 58, 73, 87
MseI TTAA 2 cut(s) 90, 229
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 136
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 90, 229
Sau3AI GATC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 211
SetI ASST 3 cut(s) 34, 54, 169
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 8 cut(s) 27, 59, 76, 136, 158, 191, 222, 223
Sse9I AATT 3 cut(s) 87, 100, 222
SsiI CCGC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 178, 189
TasI AATT 3 cut(s) 87, 100, 222
Tru1I TTAA 2 cut(s) 90, 229
Tru9I TTAA 2 cut(s) 90, 229
TscAI CASTG 1 cut(s) 112
TspRI CASTG 1 cut(s) 112
XapI RAATTY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.