RchiOBHm_Chr4g0390911

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000470
Physical Location & Seq
Forward (+)
6209372 .. 6209620
249 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36383

Sequence Viewer

Length: 249 bp
ATGCGGTGTGTAGGTAAGGATTCGTGGCCTGAGCTCGTCGGAGCCAAGGCGACAAAGACGGAGGCAAAAATTGAGAGCGAGAATGATTTAGTCAAGGTTGTCATGGTGAAAGAAGGATCATATGTCATTGATGATTTTCGATGTAATAGGGTTCGAGTTTGGGTCGATAAACAATTAAACACGGCACCGTCACCAGGGTCCCCACAAGTGGTTGAATTTAGTCTCTTAGGGTATTTCAAGGTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

82

Amino Acids

9.2

Weight (kDa)

7.74

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 6 - 58 4.5e-20 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 194, 208
AgsI TTSAA 2 cut(s) 215, 238
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 124
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 118, 183
AvaII GGWCC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 4 cut(s) 43, 186, 199, 200
BmrFI CCNGG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 45, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 208
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 45, 194
BseLI CCNNNNNNNGG 2 cut(s) 194, 208
BseMII CTCAG 1 cut(s) 21
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 194, 208
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 4 cut(s) 43, 186, 199, 200
BspPI GGATC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 45, 194
BssMI GATC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 30, 226
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BsuRI GGCC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 198
CviAII CATG 1 cut(s) 103
CviJI RGCY 3 cut(s) 28, 34, 44
CviKI_1 RGCY 3 cut(s) 28, 34, 44
DdeI CTNAG 2 cut(s) 30, 226
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 104, 121, 123
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 102
FauNDI CATATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 1 cut(s) 106
HinfI GANTC 1 cut(s) 20
HphI GGTGA 2 cut(s) 118, 183
Hpy188I TCNGA 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 189
HpyF3I CTNAG 2 cut(s) 30, 226
Hsp92II CATG 1 cut(s) 106
KflI GGGWCCC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 3 cut(s) 42, 180, 207
MaeIII GTNAC 1 cut(s) 189
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 3 cut(s) 69, 173, 215
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 1 cut(s) 55
MseI TTAA 2 cut(s) 176, 247
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 121
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 4 cut(s) 43, 186, 199, 200
NmuCI GTSAC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 4 cut(s) 43, 186, 199, 200
PspPI GGNCC 1 cut(s) 198
PspPPI RGGWCCY 1 cut(s) 198
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 176, 247
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 16, 36, 99, 243
SinI GGWCC 1 cut(s) 198
Sse9I AATT 3 cut(s) 69, 173, 215
SsiI CCGC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 139, 154, 165
TasI AATT 3 cut(s) 69, 173, 215
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 176, 247
Tru9I TTAA 2 cut(s) 176, 247
TseFI GTSAC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.