Prupe.I000300_v2.0.a1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
scaffold_116
OG0000470
Physical Location & Seq
Forward (+)
5489 .. 6247
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.I000300.1

Sequence Viewer

Length: 213 bp
ATGTCATCTGAGTGTCAAGGTAAGAGTAGATGGCCTGAACTTCTGGGAGCTCAGGGGACAGTTGCAGAGGCAACAATTGAGAGGCAGAATTCTTCGGTTGATGCTCAGATCGTGCTAGAAGGGACGCCTGTCACTCGTGATTTCCGGTGCGATAGGGTTCGTGTTTGGGTCGATACAGATGGCATTGTTATAAGGGTCCCTAGTATTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.69

Weight (kDa)

4.89

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
AcsI RAATTY 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 52
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 52
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 52
BccI CCATC 2 cut(s) 24, 173
BfaI CTAG 2 cut(s) 116, 201
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 197, 198
BmsI GCATC 1 cut(s) 91
BoxI GACNNNNGTC 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 65, 119
BshFI GGCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 3 cut(s) 70, 136, 182
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 70, 136, 182
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 108
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 64, 118
BspLI GGNNCC 2 cut(s) 197, 198
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 125
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 125
BstDEI CTNAG 3 cut(s) 9, 51, 105
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstPAI GACNNNNGTC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 196
CseI GACGC 1 cut(s) 133
CviJI RGCY 2 cut(s) 34, 50
CviKI_1 RGCY 2 cut(s) 34, 50
DdeI CTNAG 3 cut(s) 9, 51, 105
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 52
FaiI YATR 1 cut(s) 191
FaqI GGGAC 3 cut(s) 70, 136, 182
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 2 cut(s) 116, 201
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 125
HpaII CCGG 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 10, 108
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 9, 51, 105
Hsp92I GRCGYC 1 cut(s) 125
KflI GGGWCCC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 29, 38, 48, 141, 158
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 116, 201
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 84
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 75, 88
MnlI CCTC 2 cut(s) 61, 75
MslI CAYNNNNRTG 1 cut(s) 10
MspI CCGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 75
NdeII GATC 1 cut(s) 108
NlaIV GGNNCC 2 cut(s) 197, 198
NmuCI GTSAC 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 128
PsiI TTATAA 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 197, 198
PspPI GGNCC 1 cut(s) 196
PspPPI RGGWCCY 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 10
SacI GAGCTC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 52
SetI ASST 2 cut(s) 22, 52
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 10
Sse9I AATT 2 cut(s) 75, 88
SspMI CTAG 2 cut(s) 116, 201
SstI GAGCTC 1 cut(s) 52
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 75, 88
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 88
XspI CTAG 2 cut(s) 116, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.