Rh4CG036900

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000470
Physical Location & Seq
Forward (+)
7510512 .. 7513614
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG036900.1

Sequence Viewer

Length: 276 bp
ATGATCGAAGCTGAAATAACTGAGCTATTTACATCTCTGTTACACAGAGATACCAAGCCAGGTGTTTCTGATCCATCTTCATGTAAGGATTCGTGGCCTGAGCTCGTCGGAGCCAAGGCGACAGAGGCGGAGGCAAAAATTGAGAGTGAGAATGATTTAGTCAAGGTTGTCATCGTGAAAGAAGGATCATATGTCACTCATGATTTTCGGTGTAATAGGGTTCGAGTTTGGGTCGATAAACATGGCACCGTCGCCAGGGTCCCCACAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

91

Amino Acids

10.07

Weight (kDa)

5.55

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 29 - 91 1.6e-26 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 1 cut(s) 128
AclWI GGATC 2 cut(s) 65, 193
AfiI CCNNNNNNNGG 2 cut(s) 255, 269
AjnI CCWGG 2 cut(s) 58, 254
AluBI AGCT 3 cut(s) 11, 25, 103
AluI AGCT 3 cut(s) 11, 25, 103
Alw21I GWGCWC 1 cut(s) 105
AlwI GGATC 2 cut(s) 65, 193
AoxI GGCC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 259
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 60, 256
Bme1390I CCNGG 2 cut(s) 60, 256
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 4 cut(s) 112, 247, 260, 261
BmrFI CCNGG 2 cut(s) 60, 256
Bpu10I CCTNAGC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 114, 255
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 269
BseBI CCWGG 2 cut(s) 60, 256
BseDI CCNNGG 2 cut(s) 114, 255
BseLI CCNNNNNNNGG 2 cut(s) 255, 269
BseMII CTCAG 2 cut(s) 12, 90
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 255, 269
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 3, 70, 185
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 13, 91
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 4 cut(s) 112, 247, 260, 261
BspPI GGATC 2 cut(s) 65, 193
BspT107I GGYRCC 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 114, 255
BssMI GATC 3 cut(s) 3, 70, 185
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 60, 256
Bst4CI ACNGT 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 21, 99
BstKTI GATC 3 cut(s) 6, 73, 188
BstMBI GATC 3 cut(s) 3, 70, 185
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 2 cut(s) 60, 256
BstSCI CCNGG 2 cut(s) 58, 254
BsuRI GGCC 1 cut(s) 97
CciI TCATGA 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 259
CviAII CATG 3 cut(s) 81, 200, 242
CviJI RGCY 6 cut(s) 11, 25, 58, 97, 103, 113
CviKI_1 RGCY 6 cut(s) 11, 25, 58, 97, 103, 113
DdeI CTNAG 2 cut(s) 21, 99
DpnI GATC 3 cut(s) 5, 72, 187
DpnII GATC 3 cut(s) 3, 70, 185
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 58, 254
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 84, 203, 245
FaiI YATR 5 cut(s) 82, 190, 192, 201, 243
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 80, 199, 241
FauNDI CATATG 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 3 cut(s) 84, 203, 245
HinfI GANTC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 70, 110
Hpy188III TCNNGA 2 cut(s) 175, 200
Hpy99I CGWCG 2 cut(s) 110, 254
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 21, 99
Hsp92II CATG 3 cut(s) 84, 203, 245
KflI GGGWCCC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 3, 70, 185
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 45, 72, 111, 241, 268
MaeIII GTNAC 2 cut(s) 39, 193
MalI GATC 3 cut(s) 5, 72, 187
MboI GATC 3 cut(s) 3, 70, 185
MboII GAAGA 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 2 cut(s) 118, 124
MslI CAYNNNNRTG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 60, 256
MvaI CCWGG 2 cut(s) 60, 256
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 3, 70, 185
NlaIII CATG 3 cut(s) 84, 203, 245
NlaIV GGNNCC 4 cut(s) 112, 247, 260, 261
NmuCI GTSAC 1 cut(s) 193
PagI TCATGA 1 cut(s) 199
PfeI GAWTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 259
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 58, 254
PspGI CCWGG 2 cut(s) 58, 254
PspN4I GGNNCC 4 cut(s) 112, 247, 260, 261
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 79
SacI GAGCTC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 3, 70, 185
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 60, 256
SduI GDGCHC 1 cut(s) 105
SetI ASST 5 cut(s) 13, 27, 64, 105, 168
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 79
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 128
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 58, 254
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 6, 223, 234
TasI AATT 1 cut(s) 138
TfiI GAWTC 1 cut(s) 89
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.