RLG00000009909

serine-type endopeptidase inhibitor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000470
Physical Location & Seq
Reverse (-)
59989464 .. 59991415
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009909

Sequence Viewer

Length: 471 bp
ATGCCGTGTGCAGGTAAGAATTCGTGGCCTGAGCTCGTCGGAGCTAAGGGAAGGGAGGCGGAGAGAAAAGTTGAAAGCGAGAATGATTTAGTCGAGGCTGTCATTGTGAAAGAAGGATCATTTGTCACTCAAGATTACCGGTGTGATAGGGTTCGAATTTGGGTCGATAGACATGGCACTGTCACCAGGGTCCCTACAATTGGTAAGGATTCGTGGCCTGAGCTCGTCGGAGCCAAGGCGACAGAGGCGGAGGCAAAAATAATTGAGAGTGAGAATGATTTAGTCAAGGTTGTCATCGTGAAAGAAGGATCATATGTCACTCATGATTTTCGGTGTAATAGGGTTCGAGTTTGGGTCGATAAACATGGCACCGCACCAGGGTCCCCACAAGTGGTTGAATTTAGTCTCTTAGGGTATGTCAAGGTTACTAAGTTGAATAAGCAGATGTATGATCTCCATGCATTATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

157

Amino Acids

17.57

Weight (kDa)

6.91

Isoelectric Point (pI)

20.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 6 - 68 5.3e-25 Potato inhibitor I family
potato_inhibit PF00280 69 - 125 1.1e-20 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AccB1I GGYRCC 1 cut(s) 368
AciI CCGC 3 cut(s) 59, 248, 372
AclWI GGATC 2 cut(s) 124, 316
AcsI RAATTY 3 cut(s) 19, 156, 398
AfiI CCNNNNNNNGG 4 cut(s) 11, 200, 378, 391
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 3 cut(s) 74, 398, 436
AjnI CCWGG 2 cut(s) 185, 376
AluBI AGCT 3 cut(s) 34, 44, 223
AluI AGCT 3 cut(s) 34, 44, 223
Alw21I GWGCWC 2 cut(s) 36, 225
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 2 cut(s) 124, 316
AoxI GGCC 2 cut(s) 26, 215
ApoI RAATTY 3 cut(s) 19, 156, 398
AsiGI ACCGGT 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 190, 381
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 154
AvaII GGWCC 2 cut(s) 190, 381
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 36, 225
Bbv12I GWGCWC 2 cut(s) 36, 225
BciT130I CCWGG 2 cut(s) 187, 378
BcoDI GTCTC 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 2
Bme1390I CCNGG 2 cut(s) 187, 378
Bme18I GGWCC 2 cut(s) 190, 381
BmgT120I GGNCC 2 cut(s) 190, 381
BmiI GGNNCC 6 cut(s) 191, 192, 232, 370, 382, 383
BmrFI CCNGG 2 cut(s) 187, 378
Bpu10I CCTNAGC 3 cut(s) 30, 45, 219
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 186, 234, 377
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 200, 378, 391
Bse118I RCCGGY 1 cut(s) 138
BseBI CCWGG 2 cut(s) 187, 378
BseDI CCNNGG 3 cut(s) 186, 234, 377
BseLI CCNNNNNNNGG 4 cut(s) 11, 200, 378, 391
BseMII CTCAG 2 cut(s) 21, 210
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 28, 217
BshNI GGYRCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 36, 225
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 2 cut(s) 176, 367
BslI CCNNNNNNNGG 4 cut(s) 11, 200, 378, 391
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 2 cut(s) 176, 367
BsnI GGCC 2 cut(s) 28, 217
Bsp119I TTCGAA 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 36, 225
Bsp143I GATC 3 cut(s) 116, 308, 451
BspACI CCGC 3 cut(s) 59, 248, 372
BspANI GGCC 2 cut(s) 28, 217
BspCNI CTCAG 2 cut(s) 22, 211
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 6 cut(s) 191, 192, 232, 370, 382, 383
BspMI ACCTGC 1 cut(s) 2
BspPI GGATC 2 cut(s) 124, 316
BspT104I TTCGAA 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 186, 234, 377
BssMI GATC 3 cut(s) 116, 308, 451
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 187, 378
Bst4CI ACNGT 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 154
BstDEI CTNAG 5 cut(s) 30, 45, 219, 409, 429
BstKTI GATC 3 cut(s) 119, 311, 454
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 116, 308, 451
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 2 cut(s) 187, 378
BstSCI CCNGG 2 cut(s) 185, 376
BsuRI GGCC 2 cut(s) 28, 217
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 2
CciI TCATGA 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 190, 381
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 4 cut(s) 173, 323, 365, 458
CviJI RGCY 7 cut(s) 28, 34, 44, 98, 217, 223, 233
CviKI_1 RGCY 7 cut(s) 28, 34, 44, 98, 217, 223, 233
DdeI CTNAG 5 cut(s) 30, 45, 219, 409, 429
DpnI GATC 3 cut(s) 118, 310, 453
DpnII GATC 3 cut(s) 116, 308, 451
EciI GGCGGA 2 cut(s) 74, 263
Ecl136II GAGCTC 2 cut(s) 34, 223
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 2 cut(s) 36, 225
Eco47I GGWCC 2 cut(s) 190, 381
Eco53kI GAGCTC 2 cut(s) 34, 223
EcoICRI GAGCTC 2 cut(s) 34, 223
EcoO109I RGGNCCY 2 cut(s) 190, 381
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 185, 376
EcoT14I CCWWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 36, 225
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 4 cut(s) 176, 326, 368, 461
FaiI YATR 9 cut(s) 174, 313, 315, 324, 366, 417, 450, 459, 466
FaqI GGGAC 2 cut(s) 176, 367
FatI CATG 4 cut(s) 172, 322, 364, 457
FauNDI CATATG 1 cut(s) 313
FriOI GRGCYC 2 cut(s) 36, 225
HaeIII GGCC 2 cut(s) 28, 217
HapII CCGG 1 cut(s) 139
Hin1II CATG 4 cut(s) 176, 326, 368, 461
HinfI GANTC 1 cut(s) 209
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 41, 230
Hpy188III TCNNGA 3 cut(s) 131, 298, 323
Hpy99I CGWCG 2 cut(s) 41, 230
HpyAV CCTTC 3 cut(s) 45, 107, 299
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 11, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 5 cut(s) 30, 45, 219, 409, 429
Hsp92II CATG 4 cut(s) 176, 326, 368, 461
KflI GGGWCCC 2 cut(s) 190, 381
Kzo9I GATC 3 cut(s) 116, 308, 451
LmnI GCTCC 2 cut(s) 41, 230
LpnPI CCDG 7 cut(s) 42, 152, 172, 199, 231, 363, 390
MaeIII GTNAC 4 cut(s) 124, 181, 316, 424
MalI GATC 3 cut(s) 118, 310, 453
MboI GATC 3 cut(s) 116, 308, 451
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 36, 225
MluCI AATT 5 cut(s) 19, 156, 198, 261, 398
MmeI TCCRAC 2 cut(s) 19, 208
MnlI CCTC 4 cut(s) 49, 88, 238, 244
Mph1103I ATGCAT 1 cut(s) 463
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 187, 378
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 2 cut(s) 187, 378
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeI CATATG 1 cut(s) 313
NdeII GATC 3 cut(s) 116, 308, 451
NlaIII CATG 4 cut(s) 176, 326, 368, 461
NlaIV GGNNCC 6 cut(s) 191, 192, 232, 370, 382, 383
NmuCI GTSAC 3 cut(s) 124, 181, 316
NsiI ATGCAT 1 cut(s) 463
NspV TTCGAA 1 cut(s) 154
PagI TCATGA 1 cut(s) 322
PfeI GAWTC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 138
PpuMI RGGWCCY 2 cut(s) 190, 381
Psp124BI GAGCTC 2 cut(s) 36, 225
Psp5II RGGWCCY 2 cut(s) 190, 381
Psp6I CCWGG 2 cut(s) 185, 376
PspGI CCWGG 2 cut(s) 185, 376
PspN4I GGNNCC 6 cut(s) 191, 192, 232, 370, 382, 383
PspPI GGNCC 2 cut(s) 190, 381
PspPPI RGGWCCY 2 cut(s) 190, 381
SacI GAGCTC 2 cut(s) 36, 225
Sau3AI GATC 3 cut(s) 116, 308, 451
Sau96I GGNCC 2 cut(s) 190, 381
ScrFI CCNGG 2 cut(s) 187, 378
SduI GDGCHC 2 cut(s) 36, 225
SetI ASST 6 cut(s) 16, 36, 46, 225, 291, 426
SfuI TTCGAA 1 cut(s) 154
SinI GGWCC 2 cut(s) 190, 381
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 5 cut(s) 19, 156, 198, 261, 398
SsiI CCGC 3 cut(s) 59, 248, 372
SstI GAGCTC 2 cut(s) 36, 225
StyD4I CCNGG 2 cut(s) 185, 376
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 5 cut(s) 93, 154, 165, 346, 357
TasI AATT 5 cut(s) 19, 156, 198, 261, 398
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 3 cut(s) 124, 181, 316
Tsp45I GTSAC 3 cut(s) 124, 181, 316
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 190, 381
XapI RAATTY 3 cut(s) 19, 156, 398
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.