AT1G06660

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2037311 .. 2040419
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06660.1

Sequence Viewer

Length: 1446 bp
ATGAGACGACTGTTGATGAACCGAAACCTAAGCCCCTTGTGCAGATCCGTGCTCAGATTCATCGATTTATCAGTCTGTAGAGCCATGGCTTGTTTTCTCGACTGCTTCCGCGCCAGAGACAATCGCTCTACTAGTAATCTCGTCTCTCATTCTTCACTCGCCAATTCCAGAAAAGCACAGGACTCGCAGAATGATTTGTCAGCTTTGTTTCTTTCTGAAGAGAAATCAGCTTCTTCGCCTTGCCTTGACAAAGAAAGATTTGATTTAGATTCTATACATATTGACAAAGGCCTTAGGGATGAGGCGCGGTTTCTTAAAGCTTGTGGTACTATACCGGAGACACCTATTGAAATTAGGAAAGCATCCCAAAAACTTAGTCCTCAACATTCTGGATCTTCCCATTTTCACTCATGGATTTCCAGTAGCTCCTCTATGGGGTCTCGTTTGGCTGAATCCTCAACCCCCATGAAAGCTTGTGAAGAGGTGGGAAGACCATCATTTACTTCAGAGCAAACAGCTAGCAGTTGTGTAATCGATGTCCGGGACAATGCAAGGATCTCTTCTGCATCTAGTGATGGTACTGAGGTAGAAAGCGTTGGCACTGCAATCAAGGGTGAGTTGGATAGAACGGCCAGGCCAACGTTCACAGCTGGAAAGAATAAGTCTGTCCGGTTTGAATGTGATCTTGATCAATCAAACTCTTCTAATTCTTCCGAGAATGGCAGTTCAAGAAAACCCGAGATGGGTGGCAAAATTTGTTTTACAGTGAGCTCACCTAATCCAACCCCCTTGAAACTATCTGATGAGATGCAAACTCCTGGAACCATATATCCTGCAAACATGGAATCAGGGGGAAGGGGGAGGCCTAGAATCAGGTCACAGTTTGTGCATTCAGTTTCCAATATAATGGAAAATGCATCCTTATATAAGGTCTACAAGGATTCACATGAAGGCCTAGATTACGAAGAGCAGATAGAGGCTGAAACACCCTCTTCAGAAACTTATGGTGAAAAAGTGGAAGAAAGCTCAGATGAGAAACTGTCCAAGTTTGAGGCAAGTTTTTCTCCTTGGCTAAACCAGATCAATGAAAACATTGCGGCTTTAAATGAAAGGACACCAGGAGTCGGTGTCATAACCCCAGGTGACAGGCCTATCATTGGATTGGTTGCTGCTCAGTGGATCGAGAATGAGCAAACTGAGATTTCACCCAAAATGTGGGATGGAAATGGGATCCCAAATTCGACAACCAAATACAAGGAGGATCAGAAAGTGAGTTGGCATGCAACACCATTTGAAGTGAGACTGGAGAAGGCACTTTCTGAAGAAGGTGGTCAGAGTTTATTCCCTCAAAGGAAACTTGAAGTGATGATGGAGGAGGTTGAAGGGGACACAGACATATCGCAGCTGCACCATTCAGTGCAACCAAACTCGGTAGTTTCCTTCTGA

Protein Analysis

481

Amino Acids

53.14

Weight (kDa)

5.36

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1215
AccI GTMKAC 1 cut(s) 933
AccII CGCG 2 cut(s) 111, 307
AciI CCGC 3 cut(s) 109, 307, 1097
AclI AACGTT 1 cut(s) 641
AclWI GGATC 7 cut(s) 39, 400, 563, 1187, 1225, 1238, 1269
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 2 cut(s) 753, 1237
AcuI CTGAAG 4 cut(s) 237, 489, 978, 1341
AfaI GTAC 2 cut(s) 328, 580
AfiI CCNNNNNNNGG 5 cut(s) 435, 743, 1124, 1157, 1215
AgsI TTSAA 7 cut(s) 350, 677, 729, 793, 1295, 1361, 1382
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 4 cut(s) 632, 817, 1117, 1138
AloI GAACNNNNNNTCC 2 cut(s) 814, 846
Alw21I GWGCWC 2 cut(s) 54, 773
Alw26I GTCTC 5 cut(s) 111, 148, 332, 444, 1294
AlwI GGATC 7 cut(s) 39, 400, 563, 1187, 1225, 1238, 1269
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 6 cut(s) 289, 630, 635, 863, 952, 1148
ApeKI GCWGC 3 cut(s) 1169, 1402, 1405
ApoI RAATTY 2 cut(s) 753, 1237
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
AspLEI GCGC 2 cut(s) 113, 307
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 5 cut(s) 626, 765, 1019, 1154, 1197
AsuNHI GCTAGC 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 737
AxyI CCTNAGG 1 cut(s) 293
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
BamHI GGATCC 1 cut(s) 1230
BanII GRGCYC 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 496
Bbv12I GWGCWC 2 cut(s) 54, 773
BbvI GCAGC 3 cut(s) 1156, 1392, 1414
BccI CCATC 5 cut(s) 502, 569, 736, 1214, 1363
BceAI ACGGC 1 cut(s) 645
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciT130I CCWGG 4 cut(s) 634, 819, 1119, 1140
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 5 cut(s) 111, 148, 332, 444, 1294
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 5 cut(s) 132, 519, 570, 867, 956
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 4 cut(s) 1098, 1170, 1403, 1406
BlsI GCNGC 4 cut(s) 1099, 1171, 1404, 1407
Bme1390I CCNGG 5 cut(s) 542, 634, 819, 1119, 1140
BmeT110I CYCGRG 1 cut(s) 737
BmiI GGNNCC 2 cut(s) 823, 1232
BmrFI CCNGG 5 cut(s) 542, 634, 819, 1119, 1140
BmsI GCATC 4 cut(s) 371, 575, 798, 926
BmtI GCTAGC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 496
BpmI CTGGAG 1 cut(s) 1325
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 542
Bsa29I ATCGAT 2 cut(s) 63, 534
BsaBI GATNNNNATC 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 444
BsaJI CCNNGG 3 cut(s) 84, 1067, 1138
BsaWI WCCGGW 2 cut(s) 334, 669
BsaXI ACNNNNNCTCC 2 cut(s) 1113, 1143
Bsc4I CCNNNNNNNGG 5 cut(s) 435, 743, 1124, 1157, 1215
Bse1I ACTGG 2 cut(s) 420, 1308
Bse21I CCTNAGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 1092
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 4 cut(s) 634, 819, 1119, 1140
BseCI ATCGAT 2 cut(s) 63, 534
BseDI CCNNGG 3 cut(s) 84, 1067, 1138
BseGI GGATG 4 cut(s) 304, 362, 917, 1225
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 5 cut(s) 435, 743, 1124, 1157, 1215
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 5 cut(s) 67, 573, 1041, 1187, 1188
BseNI ACTGG 2 cut(s) 420, 1308
BseRI GAGGAG 2 cut(s) 418, 1388
BseXI GCAGC 3 cut(s) 1156, 1392, 1414
BsgI GTGCAG 2 cut(s) 61, 1391
Bsh1236I CGCG 2 cut(s) 111, 307
BshFI GGCC 6 cut(s) 291, 632, 637, 865, 954, 1150
BshVI ATCGAT 2 cut(s) 63, 534
BsiHKAI GWGCWC 2 cut(s) 54, 773
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 3 cut(s) 335, 541, 670
BslFI GGGAC 2 cut(s) 557, 1400
BslI CCNNNNNNNGG 5 cut(s) 435, 743, 1124, 1157, 1215
BsmAI GTCTC 5 cut(s) 111, 148, 332, 444, 1294
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 557, 1400
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 6 cut(s) 291, 632, 637, 865, 954, 1150
Bso31I GGTCTC 1 cut(s) 444
BsoBI CYCGRG 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 54, 773
Bsp143I GATC 9 cut(s) 44, 392, 555, 682, 688, 1080, 1179, 1230, 1261
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 3 cut(s) 109, 307, 1097
BspANI GGCC 6 cut(s) 291, 632, 637, 865, 954, 1150
BspCNI CTCAG 5 cut(s) 66, 574, 1040, 1186, 1189
BspDI ATCGAT 2 cut(s) 63, 534
BspFNI CGCG 2 cut(s) 111, 307
BspLI GGNNCC 2 cut(s) 823, 1232
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 7 cut(s) 39, 400, 563, 1187, 1225, 1238, 1269
BspQI GCTCTTC 1 cut(s) 960
BspTNI GGTCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 1092
BsrI ACTGG 2 cut(s) 420, 1308
BssECI CCNNGG 3 cut(s) 84, 1067, 1138
BssMI GATC 9 cut(s) 44, 392, 555, 682, 688, 1080, 1179, 1230, 1261
BssT1I CCWWGG 2 cut(s) 84, 1067
Bst2UI CCWGG 4 cut(s) 634, 819, 1119, 1140
Bst4CI ACNGT 4 cut(s) 12, 766, 882, 1041
Bst6I CTCTTC 6 cut(s) 213, 474, 565, 706, 960, 997
BstC8I GCNNGC 2 cut(s) 520, 1281
BstDEI CTNAG 8 cut(s) 29, 53, 293, 374, 582, 1027, 1173, 1197
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 4 cut(s) 304, 362, 917, 1225
BstFNI CGCG 2 cut(s) 111, 307
BstHHI GCGC 2 cut(s) 113, 307
BstKTI GATC 9 cut(s) 47, 395, 558, 685, 691, 1083, 1182, 1233, 1264
BstMAI GTCTC 5 cut(s) 111, 148, 332, 444, 1294
BstMBI GATC 9 cut(s) 44, 392, 555, 682, 688, 1080, 1179, 1230, 1261
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 4 cut(s) 634, 819, 1119, 1140
BstNSI RCATGY 1 cut(s) 1283
BstSCI CCNGG 5 cut(s) 540, 632, 817, 1117, 1138
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 2 cut(s) 111, 307
BstV1I GCAGC 3 cut(s) 1156, 1392, 1414
BstV2I GAAGAC 1 cut(s) 496
BstX2I RGATCY 4 cut(s) 44, 392, 555, 1230
BstXI CCANNNNNNTGG 1 cut(s) 907
BstYI RGATCY 4 cut(s) 44, 392, 555, 1230
Bsu15I ATCGAT 2 cut(s) 63, 534
Bsu36I CCTNAGG 1 cut(s) 293
BsuRI GGCC 6 cut(s) 291, 632, 637, 865, 954, 1150
BsuTUI ATCGAT 2 cut(s) 63, 534
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 4 cut(s) 304, 362, 917, 1225
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 4 cut(s) 600, 771, 1181, 1422
Cac8I GCNNGC 2 cut(s) 520, 1281
CfoI GCGC 2 cut(s) 113, 307
ClaI ATCGAT 2 cut(s) 63, 534
Csp6I GTAC 2 cut(s) 327, 579
CviAII CATG 6 cut(s) 85, 411, 466, 841, 947, 1280
CviQI GTAC 2 cut(s) 327, 579
DdeI CTNAG 8 cut(s) 29, 53, 293, 374, 582, 1027, 1173, 1197
DpnI GATC 9 cut(s) 46, 394, 557, 684, 690, 1082, 1181, 1232, 1263
DpnII GATC 9 cut(s) 44, 392, 555, 682, 688, 1080, 1179, 1230, 1261
DraI TTTAAA 1 cut(s) 1104
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 6 cut(s) 213, 474, 565, 706, 960, 997
EarI CTCTTC 6 cut(s) 213, 474, 565, 706, 960, 997
Ecl136II GAGCTC 1 cut(s) 771
Eco130I CCWWGG 2 cut(s) 84, 1067
Eco147I AGGCCT 4 cut(s) 291, 865, 954, 1150
Eco24I GRGCYC 1 cut(s) 773
Eco31I GGTCTC 1 cut(s) 444
Eco53kI GAGCTC 1 cut(s) 771
Eco57I CTGAAG 4 cut(s) 237, 489, 978, 1341
Eco81I CCTNAGG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 737
EcoICRI GAGCTC 1 cut(s) 771
EcoRII CCWGG 4 cut(s) 632, 817, 1117, 1138
EcoT14I CCWWGG 2 cut(s) 84, 1067
EcoT22I ATGCAT 1 cut(s) 919
EcoT38I GRGCYC 1 cut(s) 773
ErhI CCWWGG 2 cut(s) 84, 1067
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 6 cut(s) 88, 414, 469, 844, 950, 1283
FalI AAGNNNNNCTT 2 cut(s) 544, 576
FaqI GGGAC 2 cut(s) 557, 1400
FatI CATG 6 cut(s) 84, 410, 465, 840, 946, 1279
FbaI TGATCA 1 cut(s) 688
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 4 cut(s) 1098, 1170, 1403, 1406
FokI GGATG 4 cut(s) 311, 349, 904, 1232
FriOI GRGCYC 1 cut(s) 773
Fsp4HI GCNGC 4 cut(s) 1098, 1170, 1403, 1406
FspBI CTAG 5 cut(s) 132, 519, 570, 867, 956
GlaI GCGC 2 cut(s) 112, 306
GluI GCNGC 4 cut(s) 1098, 1170, 1403, 1406
GsuI CTGGAG 1 cut(s) 1325
HaeIII GGCC 6 cut(s) 291, 632, 637, 865, 954, 1150
HapII CCGG 3 cut(s) 335, 541, 670
HhaI GCGC 2 cut(s) 113, 307
Hin1II CATG 6 cut(s) 88, 414, 469, 844, 950, 1283
Hin6I GCGC 2 cut(s) 111, 305
HinP1I GCGC 2 cut(s) 111, 305
HindIII AAGCTT 2 cut(s) 318, 471
HinfI GANTC 8 cut(s) 57, 182, 269, 452, 845, 870, 941, 1122
HpaII CCGG 3 cut(s) 335, 541, 670
HphI GGTGA 5 cut(s) 626, 765, 1019, 1154, 1197
Hpy166II GTNNAC 2 cut(s) 645, 934
Hpy188III TCNNGA 6 cut(s) 98, 168, 390, 686, 729, 1183
Hpy8I GTNNAC 2 cut(s) 645, 934
HpyAV CCTTC 5 cut(s) 849, 944, 1303, 1319, 1376
HpyCH4III ACNGT 4 cut(s) 12, 766, 882, 1041
HpyCH4IV ACGT 1 cut(s) 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 8 cut(s) 29, 53, 293, 374, 582, 1027, 1173, 1197
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 6 cut(s) 88, 414, 469, 844, 950, 1283
HspAI GCGC 2 cut(s) 111, 305
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 9 cut(s) 44, 392, 555, 682, 688, 1080, 1179, 1230, 1261
LguI GCTCTTC 1 cut(s) 960
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 3 cut(s) 1156, 1392, 1414
LweI GCATC 4 cut(s) 371, 575, 798, 926
MaeI CTAG 5 cut(s) 132, 519, 570, 867, 956
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 2 cut(s) 876, 1142
MalI GATC 9 cut(s) 46, 394, 557, 684, 690, 1082, 1181, 1232, 1263
MboI GATC 9 cut(s) 44, 392, 555, 682, 688, 1080, 1179, 1230, 1261
MflI RGATCY 4 cut(s) 44, 392, 555, 1230
MhlI GDGCHC 2 cut(s) 54, 773
MluCI AATT 5 cut(s) 163, 351, 706, 753, 1237
MlyI GAGTC 2 cut(s) 176, 1131
MmeI TCCRAC 2 cut(s) 600, 806
Mph1103I ATGCAT 1 cut(s) 919
MseI TTAA 2 cut(s) 315, 1103
MspA1I CMGCKG 2 cut(s) 650, 1405
MspI CCGG 3 cut(s) 335, 541, 670
MspR9I CCNGG 5 cut(s) 542, 634, 819, 1119, 1140
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 4 cut(s) 634, 819, 1119, 1140
MvnI CGCG 2 cut(s) 111, 307
MwoI GCNNNNNNNGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 542
NcoI CCATGG 1 cut(s) 84
NdeII GATC 9 cut(s) 44, 392, 555, 682, 688, 1080, 1179, 1230, 1261
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 6 cut(s) 88, 414, 469, 844, 950, 1283
NlaIV GGNNCC 2 cut(s) 823, 1232
NmuCI GTSAC 2 cut(s) 876, 1142
NsiI ATGCAT 1 cut(s) 919
NspI RCATGY 1 cut(s) 1283
PaeI GCATGC 1 cut(s) 1283
PceI AGGCCT 4 cut(s) 291, 865, 954, 1150
PciSI GCTCTTC 1 cut(s) 960
PctI GAATGC 1 cut(s) 889
PfeI GAWTC 6 cut(s) 57, 269, 452, 845, 870, 941
PflMI CCANNNNNTGG 1 cut(s) 1215
PfoI TCCNGGA 2 cut(s) 540, 817
PkrI GCNGC 4 cut(s) 1099, 1171, 1404, 1407
PleI GAGTC 2 cut(s) 176, 1130
PpsI GAGTC 2 cut(s) 176, 1130
Psp124BI GAGCTC 1 cut(s) 773
Psp1406I AACGTT 1 cut(s) 641
Psp6I CCWGG 4 cut(s) 632, 817, 1117, 1138
PspGI CCWGG 4 cut(s) 632, 817, 1117, 1138
PspN4I GGNNCC 2 cut(s) 823, 1232
PsuI RGATCY 4 cut(s) 44, 392, 555, 1230
PvuII CAGCTG 2 cut(s) 650, 1405
RsaI GTAC 2 cut(s) 328, 580
RsaNI GTAC 2 cut(s) 327, 579
SacI GAGCTC 1 cut(s) 773
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 2 cut(s) 315, 1103
SatI GCNGC 4 cut(s) 1098, 1170, 1403, 1406
Sau3AI GATC 9 cut(s) 44, 392, 555, 682, 688, 1080, 1179, 1230, 1261
SchI GAGTC 2 cut(s) 176, 1131
ScrFI CCNGG 5 cut(s) 542, 634, 819, 1119, 1140
SduI GDGCHC 2 cut(s) 54, 773
SfaNI GCATC 4 cut(s) 371, 575, 798, 926
SfcI CTRYAG 1 cut(s) 76
SpeI ACTAGT 1 cut(s) 131
SphI GCATGC 1 cut(s) 1283
Sse9I AATT 5 cut(s) 163, 351, 706, 753, 1237
SseBI AGGCCT 4 cut(s) 291, 865, 954, 1150
SsiI CCGC 3 cut(s) 109, 307, 1097
SspMI CTAG 5 cut(s) 132, 519, 570, 867, 956
SstI GAGCTC 1 cut(s) 773
StuI AGGCCT 4 cut(s) 291, 865, 954, 1150
StyD4I CCNGG 5 cut(s) 540, 632, 817, 1117, 1138
StyI CCWWGG 2 cut(s) 84, 1067
TaaI ACNGT 4 cut(s) 12, 766, 882, 1041
TaiI ACGT 1 cut(s) 644
TaqI TCGA 5 cut(s) 63, 99, 534, 1182, 1241
TasI AATT 5 cut(s) 163, 351, 706, 753, 1237
TauI GCSGC 1 cut(s) 1100
TfiI GAWTC 6 cut(s) 57, 269, 452, 845, 870, 941
Tru1I TTAA 2 cut(s) 315, 1103
Tru9I TTAA 2 cut(s) 315, 1103
TscAI CASTG 4 cut(s) 607, 771, 1181, 1422
TseFI GTSAC 2 cut(s) 876, 1142
TseI GCWGC 3 cut(s) 1169, 1402, 1405
Tsp45I GTSAC 2 cut(s) 876, 1142
TspDTI ATGAA 6 cut(s) 32, 49, 482, 963, 1101, 1122
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 4 cut(s) 607, 771, 1181, 1422
Van91I CCANNNNNTGG 1 cut(s) 1215
XapI RAATTY 2 cut(s) 753, 1237
XceI RCATGY 1 cut(s) 1283
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 5 cut(s) 132, 519, 570, 867, 956
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.