MD09G1146900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
11533597 .. 11537381
3785 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1146900.v1.1.491

Sequence Viewer

Length: 1524 bp
ATGTTATGCTCGCTGTTGAAGCGCGGAATAGGGCATTTGTGCAGATACGCGTTGAGGTTCCTTGACAGGTCGATTTCGCGAGCTATGGGCTGCTTCTTCGGTTGCTTTCGGGTCAAGGACGATCGCCACCTTCGCTGTCGGCCTCACCTTGTTTCTCAGTCCTCTCGTAACCCCCAGACGGAAGTTGTGATATCTCAAAACCGTTTGTCTTCTCTATTTTCAGCTGAAGAGAAAGAAGGTTCTCCAAGCAAAGATTGGGAAAGTGGTTCTTATGGGACTCCACAAATTGACAAGGAGCTCAGGAAGGAGGCCAAGTTTCTTAAAGCTTGTGGTACCATAGCCGAAACACCAGCTGAAATTCGTAAAGTGTCTTCAACGTTGAATGGCTCACCCCATCGTGATAGAGATTCAGAGCCTCCAAAATTCAACTCACAGCTTCCAAAGACATCCATTAAAAATCTTCAGCAAGAGTTGGATCAACCAGATCAGCCCCCTACGCCTATGAAGTTCAATGAAGAGTGGGGAAAGGGTTCAGGTCCTTCTGAGCATACGCCTAGCAGTTTTGTATCGAACCAACAGAATAATGGTAGGACCACAATCAGCTCTTCTGGAGGCAGTGGAATAGGTACTGATTCAACAGTCAAGAGTCATACTAATCGGACTGAGAATATTACAACTCCAGATGTCCAGTTCAGGGGCAAGGCTGTTCGCTTTGATTGCAATAATGATACAAATTCCTCCAGAGGTTCTTCATCCGAAAATTATAACCAGAGTTCAAAAGTATGTGAAACTCCAGGAAAACAGAGCATATCAAAGCCTTCAGTTTATCCAACCCCACTAACCCTTTCTGATGAGATGCAGACACCAGGAACTGTTTTCCCTGCAAACCTGGAAAACTTTCCAAATGGAAAGGCTCGAATCAGGTCCCAGTACGTGTATTCAGTGCAAAACCCTGGAGACGGCATCTCTCAACAGAATGTACTGAAAGACGAAGATCCTAACTCACATGGACTTTCTGTTGAGCAAAGAGAATCTCTTAACCACTGGGGAAATGCAACCCCTATATCAGAAGAGGGGGCGAAACAAATTTCATCCGGACAAGAGGTCAATGTGGAATCAAGTTTGTCCACCTGGTTGAAGCCAGTAACTCAAGATAACAACAATCAGTTTGGTAATGTTCCCGGCCGAACTCGTCATTTTGGAAGAACTCCTGGGGACAGGCCTATCATTGGGCTTGTTGCTACTCACTGGAACGAAGATGAGCCTACTCGTGTCTCACCCAAGTGGTGGGATGGGAACGGAATCCCAAACTCAACAAACAAATACAAGGAGGATCAGAAAGTGAGTTGGCACGCTACTCCATTTGAAGAAAGATTGGAAAAGGCATTGTCCGAAGAGAGTTTCATCTCTCAGAGAAAAAATATTGAGGGGAAGCCGATTGTTTTTGACGAGAATGATGAGAGCGATACAGCCCTTTCTCAGTTGCAATCTTCATCGCAGCCGAAATCAGTGGTTTCGTTCTGA

Protein Analysis

508

Amino Acids

56.32

Weight (kDa)

6.85

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 765
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 1287
AccII CGCG 3 cut(s) 24, 50, 79
AccIII TCCGGA 1 cut(s) 1094
AciI CCGC 1 cut(s) 24
AclI AACGTT 1 cut(s) 377
AclWI GGATC 3 cut(s) 483, 989, 1341
AcoI YGGCCR 1 cut(s) 1183
AcsI RAATTY 4 cut(s) 357, 422, 733, 1086
AcuI CTGAAG 3 cut(s) 246, 446, 804
AfaI GTAC 4 cut(s) 334, 628, 932, 981
AfiI CCNNNNNNNGG 5 cut(s) 178, 694, 959, 1229, 1287
AflIII ACRYGT 2 cut(s) 48, 933
AgsI TTSAA 9 cut(s) 19, 375, 382, 427, 511, 636, 777, 1138, 1367
AhdI GACNNNNNGTC 1 cut(s) 1103
AjnI CCWGG 6 cut(s) 793, 865, 888, 952, 1130, 1210
AleI CACNNNNGTG 1 cut(s) 1282
AluBI AGCT 7 cut(s) 83, 224, 298, 326, 353, 436, 603
AluI AGCT 7 cut(s) 83, 224, 298, 326, 353, 436, 603
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 951, 1279
AlwI GGATC 3 cut(s) 483, 989, 1341
AlwNI CAGNNNCTG 1 cut(s) 872
Aor13HI TCCGGA 1 cut(s) 1094
AoxI GGCC 4 cut(s) 140, 309, 1183, 1220
ApeKI GCWGC 2 cut(s) 90, 1498
ApoI RAATTY 4 cut(s) 357, 422, 733, 1086
Asp700I GAANNNNTTC 2 cut(s) 529, 897
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 536, 591, 924
AsuC2I CCSGG 1 cut(s) 1182
AsuHPI GGTGA 3 cut(s) 137, 381, 1269
AvaII GGWCC 3 cut(s) 536, 591, 924
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 300
BarI GAAGNNNNNNTAC 2 cut(s) 355, 387
BauI CACGAG 1 cut(s) 1269
BbsI GAAGAC 2 cut(s) 201, 363
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 77, 1510
BccI CCATC 2 cut(s) 402, 1286
BceAI ACGGC 1 cut(s) 976
BciT130I CCWGG 6 cut(s) 795, 867, 890, 954, 1132, 1212
BcnI CCSGG 1 cut(s) 1182
BcoDI GTCTC 2 cut(s) 951, 1279
BfaI CTAG 1 cut(s) 555
BisI GCNGC 2 cut(s) 91, 1499
BlsI GCNGC 2 cut(s) 92, 1500
Bme1390I CCNGG 7 cut(s) 795, 867, 890, 954, 1132, 1182, 1212
Bme18I GGWCC 3 cut(s) 536, 591, 924
BmeRI GACNNNNNGTC 1 cut(s) 1103
BmgT120I GGNCC 3 cut(s) 536, 591, 924
BmiI GGNNCC 3 cut(s) 59, 334, 926
BmrFI CCNGG 7 cut(s) 795, 867, 890, 954, 1132, 1182, 1212
BmrI ACTGGG 2 cut(s) 922, 1054
BmsI GCATC 2 cut(s) 846, 972
BmuI ACTGGG 2 cut(s) 922, 1054
BpiI GAAGAC 2 cut(s) 201, 363
BpmI CTGGAG 5 cut(s) 630, 663, 724, 777, 975
Bpu10I CCTNAGC 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 1134
BpuMI CCSGG 1 cut(s) 1182
BsaAI YACGTR 1 cut(s) 934
BsaJI CCNNGG 2 cut(s) 952, 1211
BsaWI WCCGGW 1 cut(s) 1094
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 5 cut(s) 178, 694, 959, 1229, 1287
Bse1I ACTGG 5 cut(s) 688, 928, 1049, 1142, 1253
BseAI TCCGGA 1 cut(s) 1094
BseBI CCWGG 6 cut(s) 795, 867, 890, 954, 1132, 1212
BseDI CCNNGG 2 cut(s) 952, 1211
BseGI GGATG 4 cut(s) 446, 752, 1091, 1297
BseLI CCNNNNNNNGG 5 cut(s) 178, 694, 959, 1229, 1287
BseMII CTCAG 6 cut(s) 170, 313, 534, 654, 1424, 1493
BseNI ACTGG 5 cut(s) 688, 928, 1049, 1142, 1253
BseX3I CGGCCG 1 cut(s) 1183
BseXI GCAGC 2 cut(s) 77, 1510
BsgI GTGCAG 1 cut(s) 61
Bsh1236I CGCG 3 cut(s) 24, 50, 79
Bsh1285I CGRYCG 2 cut(s) 124, 1186
BshFI GGCC 4 cut(s) 142, 311, 1185, 1222
BshNI GGYRCC 1 cut(s) 332
BsiEI CGRYCG 2 cut(s) 124, 1186
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 2 cut(s) 1095, 1182
BslFI GGGAC 3 cut(s) 289, 910, 1229
BslI CCNNNNNNNGG 5 cut(s) 178, 694, 959, 1229, 1287
BsmAI GTCTC 2 cut(s) 951, 1279
BsmBI CGTCTC 1 cut(s) 951
BsmFI GGGAC 3 cut(s) 289, 910, 1229
BsnI GGCC 4 cut(s) 142, 311, 1185, 1222
Bsp1286I GDGCHC 1 cut(s) 300
Bsp13I TCCGGA 1 cut(s) 1094
Bsp143I GATC 5 cut(s) 121, 475, 484, 994, 1333
Bsp68I TCGCGA 1 cut(s) 79
BspACI CCGC 1 cut(s) 24
BspANI GGCC 4 cut(s) 142, 311, 1185, 1222
BspCNI CTCAG 6 cut(s) 169, 312, 535, 655, 1423, 1492
BspEI TCCGGA 1 cut(s) 1094
BspFNI CGCG 3 cut(s) 24, 50, 79
BspLI GGNNCC 3 cut(s) 59, 334, 926
BspPI GGATC 3 cut(s) 483, 989, 1341
BspQI GCTCTTC 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 332
BsrI ACTGG 5 cut(s) 688, 928, 1049, 1142, 1253
BssECI CCNNGG 2 cut(s) 952, 1211
BssMI GATC 5 cut(s) 121, 475, 484, 994, 1333
BssSI CACGAG 1 cut(s) 1269
Bst2BI CACGAG 1 cut(s) 1269
Bst2UI CCWGG 6 cut(s) 795, 867, 890, 954, 1132, 1212
Bst4CI ACNGT 3 cut(s) 203, 640, 874
Bst6I CTCTTC 5 cut(s) 222, 510, 610, 1065, 1389
BstBAI YACGTR 1 cut(s) 934
BstC8I GCNNGC 3 cut(s) 11, 81, 1353
BstDEI CTNAG 6 cut(s) 156, 299, 543, 663, 1410, 1479
BstF5I GGATG 4 cut(s) 446, 752, 1091, 1297
BstFNI CGCG 3 cut(s) 24, 50, 79
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 5 cut(s) 124, 478, 487, 997, 1336
BstMAI GTCTC 2 cut(s) 951, 1279
BstMBI GATC 5 cut(s) 121, 475, 484, 994, 1333
BstMCI CGRYCG 2 cut(s) 124, 1186
BstMWI GCNNNNNNNGC 4 cut(s) 19, 132, 496, 717
BstNI CCWGG 6 cut(s) 795, 867, 890, 954, 1132, 1212
BstSCI CCNGG 7 cut(s) 793, 865, 888, 952, 1130, 1180, 1210
BstUI CGCG 3 cut(s) 24, 50, 79
BstV1I GCAGC 2 cut(s) 77, 1510
BstV2I GAAGAC 2 cut(s) 201, 363
BstX2I RGATCY 1 cut(s) 994
BstYI RGATCY 1 cut(s) 994
BstZI CGGCCG 1 cut(s) 1183
BsuRI GGCC 4 cut(s) 142, 311, 1185, 1222
BtgZI GCGATG 1 cut(s) 1479
BtsCI GGATG 4 cut(s) 446, 752, 1091, 1297
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 5 cut(s) 622, 948, 1042, 1246, 1515
BtuMI TCGCGA 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 11, 81, 1353
CaiI CAGNNNCTG 1 cut(s) 872
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 536, 591, 924
CsiI ACCWGGT 1 cut(s) 1130
Csp6I GTAC 4 cut(s) 333, 627, 931, 980
CviAII CATG 1 cut(s) 1007
CviQI GTAC 4 cut(s) 333, 627, 931, 980
DdeI CTNAG 6 cut(s) 156, 299, 543, 663, 1410, 1479
DpnI GATC 5 cut(s) 123, 477, 486, 996, 1335
DpnII GATC 5 cut(s) 121, 475, 484, 994, 1333
DriI GACNNNNNGTC 1 cut(s) 1103
EaeI YGGCCR 1 cut(s) 1183
EagI CGGCCG 1 cut(s) 1183
Eam1104I CTCTTC 5 cut(s) 222, 510, 610, 1065, 1389
Eam1105I GACNNNNNGTC 1 cut(s) 1103
EarI CTCTTC 5 cut(s) 222, 510, 610, 1065, 1389
Ecl136II GAGCTC 1 cut(s) 298
EclXI CGGCCG 1 cut(s) 1183
Eco147I AGGCCT 1 cut(s) 1222
Eco24I GRGCYC 1 cut(s) 300
Eco32I GATATC 1 cut(s) 192
Eco47I GGWCC 3 cut(s) 536, 591, 924
Eco52I CGGCCG 1 cut(s) 1183
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 3 cut(s) 246, 446, 804
EcoICRI GAGCTC 1 cut(s) 298
EcoO109I RGGNCCY 2 cut(s) 536, 924
EcoRII CCWGG 6 cut(s) 793, 865, 888, 952, 1130, 1210
EcoRV GATATC 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 951
FaeI CATG 1 cut(s) 1010
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FaqI GGGAC 3 cut(s) 289, 910, 1229
FatI CATG 1 cut(s) 1006
Fnu4HI GCNGC 2 cut(s) 91, 1499
FokI GGATG 4 cut(s) 433, 739, 1078, 1304
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 91, 1499
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 91, 1499
GsuI CTGGAG 5 cut(s) 630, 663, 724, 777, 975
HaeIII GGCC 4 cut(s) 142, 311, 1185, 1222
HapII CCGG 2 cut(s) 1095, 1182
HhaI GCGC 1 cut(s) 24
Hin1II CATG 1 cut(s) 1010
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 8 cut(s) 277, 407, 632, 646, 918, 1031, 1115, 1302
HpaII CCGG 2 cut(s) 1095, 1182
HphI GGTGA 3 cut(s) 137, 381, 1269
Hpy166II GTNNAC 1 cut(s) 1128
Hpy188III TCNNGA 9 cut(s) 78, 301, 398, 609, 643, 680, 741, 1095, 1151
Hpy8I GTNNAC 1 cut(s) 1128
HpyAV CCTTC 5 cut(s) 140, 230, 298, 549, 828
HpyCH4III ACNGT 3 cut(s) 203, 640, 874
HpyCH4IV ACGT 2 cut(s) 377, 933
HpyCH4V TGCA 7 cut(s) 42, 720, 859, 884, 946, 1055, 1486
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 132, 496, 717
HpyF3I CTNAG 6 cut(s) 156, 299, 543, 663, 1410, 1479
HpySE526I ACGT 2 cut(s) 377, 933
Hsp92II CATG 1 cut(s) 1010
HspAI GCGC 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 1094
KpnI GGTACC 1 cut(s) 336
Kzo9I GATC 5 cut(s) 121, 475, 484, 994, 1333
LguI GCTCTTC 1 cut(s) 610
LmnI GCTCC 1 cut(s) 295
Lsp1109I GCAGC 2 cut(s) 77, 1510
LweI GCATC 2 cut(s) 846, 972
MabI ACCWGGT 1 cut(s) 1130
MaeI CTAG 1 cut(s) 555
MaeII ACGT 2 cut(s) 377, 933
MaeIII GTNAC 2 cut(s) 167, 1144
MalI GATC 5 cut(s) 123, 477, 486, 996, 1335
MboI GATC 5 cut(s) 121, 475, 484, 994, 1333
MflI RGATCY 1 cut(s) 994
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 6 cut(s) 285, 357, 422, 733, 760, 1086
MluI ACGCGT 1 cut(s) 48
MlyI GAGTC 2 cut(s) 271, 655
MmeI TCCRAC 2 cut(s) 453, 854
MroI TCCGGA 1 cut(s) 1094
MroXI GAANNNNTTC 2 cut(s) 529, 897
MseI TTAA 3 cut(s) 321, 453, 1038
MslI CAYNNNNRTG 1 cut(s) 1282
MspA1I CMGCKG 2 cut(s) 224, 353
MspI CCGG 2 cut(s) 1095, 1182
MspR9I CCNGG 7 cut(s) 795, 867, 890, 954, 1132, 1182, 1212
MvaI CCWGG 6 cut(s) 795, 867, 890, 954, 1132, 1212
MvnI CGCG 3 cut(s) 24, 50, 79
MwoI GCNNNNNNNGC 4 cut(s) 19, 132, 496, 717
NciI CCSGG 1 cut(s) 1182
NdeII GATC 5 cut(s) 121, 475, 484, 994, 1333
NlaIII CATG 1 cut(s) 1010
NlaIV GGNNCC 3 cut(s) 59, 334, 926
NruI TCGCGA 1 cut(s) 79
OliI CACNNNNGTG 1 cut(s) 1282
PceI AGGCCT 1 cut(s) 1222
PciSI GCTCTTC 1 cut(s) 610
PdmI GAANNNNTTC 2 cut(s) 529, 897
PfeI GAWTC 6 cut(s) 407, 632, 918, 1031, 1115, 1302
PflMI CCANNNNNTGG 1 cut(s) 1287
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 2 cut(s) 92, 1500
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 2 cut(s) 271, 654
PpsI GAGTC 2 cut(s) 271, 654
Ppu21I YACGTR 1 cut(s) 934
PpuMI RGGWCCY 2 cut(s) 536, 924
PsiI TTATAA 1 cut(s) 765
Psp124BI GAGCTC 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 377
Psp5II RGGWCCY 2 cut(s) 536, 924
Psp6I CCWGG 6 cut(s) 793, 865, 888, 952, 1130, 1210
PspGI CCWGG 6 cut(s) 793, 865, 888, 952, 1130, 1210
PspN4I GGNNCC 3 cut(s) 59, 334, 926
PspPI GGNCC 3 cut(s) 536, 591, 924
PspPPI RGGWCCY 2 cut(s) 536, 924
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 1 cut(s) 994
PvuI CGATCG 1 cut(s) 124
PvuII CAGCTG 2 cut(s) 224, 353
RruI TCGCGA 1 cut(s) 79
RsaI GTAC 4 cut(s) 334, 628, 932, 981
RsaNI GTAC 4 cut(s) 333, 627, 931, 980
RseI CAYNNNNRTG 1 cut(s) 1282
SacI GAGCTC 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 610
SaqAI TTAA 3 cut(s) 321, 453, 1038
SatI GCNGC 2 cut(s) 91, 1499
Sau3AI GATC 5 cut(s) 121, 475, 484, 994, 1333
Sau96I GGNCC 3 cut(s) 536, 591, 924
SchI GAGTC 2 cut(s) 271, 655
ScrFI CCNGG 7 cut(s) 795, 867, 890, 954, 1132, 1182, 1212
SduI GDGCHC 1 cut(s) 300
SexAI ACCWGGT 1 cut(s) 1130
SfaNI GCATC 2 cut(s) 846, 972
SinI GGWCC 3 cut(s) 536, 591, 924
SmiMI CAYNNNNRTG 1 cut(s) 1282
SmlI CTYRAG 1 cut(s) 1149
SmoI CTYRAG 1 cut(s) 1149
Sse9I AATT 6 cut(s) 285, 357, 422, 733, 760, 1086
SseBI AGGCCT 1 cut(s) 1222
SsiI CCGC 1 cut(s) 24
SspI AATATT 2 cut(s) 670, 1423
SspMI CTAG 1 cut(s) 555
SstI GAGCTC 1 cut(s) 300
StuI AGGCCT 1 cut(s) 1222
StyD4I CCNGG 7 cut(s) 793, 865, 888, 952, 1130, 1180, 1210
TaaI ACNGT 3 cut(s) 203, 640, 874
TaiI ACGT 2 cut(s) 380, 936
TaqI TCGA 3 cut(s) 71, 569, 916
TasI AATT 6 cut(s) 285, 357, 422, 733, 760, 1086
TatI WGTACW 1 cut(s) 979
TfiI GAWTC 6 cut(s) 407, 632, 918, 1031, 1115, 1302
Tru1I TTAA 3 cut(s) 321, 453, 1038
Tru9I TTAA 3 cut(s) 321, 453, 1038
TscAI CASTG 5 cut(s) 622, 948, 1049, 1253, 1515
TseI GCWGC 2 cut(s) 90, 1498
TspDTI ATGAA 6 cut(s) 518, 528, 741, 1080, 1393, 1482
TspGWI ACGGA 2 cut(s) 194, 1314
TspRI CASTG 5 cut(s) 622, 948, 1049, 1253, 1515
Van91I CCANNNNNTGG 1 cut(s) 1287
VpaK11BI GGWCC 3 cut(s) 536, 591, 924
XapI RAATTY 4 cut(s) 357, 422, 733, 1086
XcmI CCANNNNNNNNNTGG 2 cut(s) 252, 581
XmnI GAANNNNTTC 2 cut(s) 529, 897
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.