Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007137

Physical Location & Seq

Genomic Coordinates Reverse (-)

36688217 .. 36689710

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1163200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCATCTGGACAAGAGGTCAATGTGGAATCAAGTTTGTCCGCGTGGCTGAAGCCGGTAACTCAAGATAACAACAATCACTTTGGTTATGTTCCTGGCCAAACTCGTCATTTTGGAAGAACTCCTGTGGACAGGCCTATCATTGGGCTTGTTGCTACTCACTGGAATGAAGATGAACATACTCGTGTCTCACCCAAGTGGTGGGATGGAAACGGAATCCCAAATTCAACAAACAAAATACAAGGAGGTTTTTGGCATGCCACCCCATTTGAAGAAAGGTTGGAAAAGGCACTGTCCGAAGAGAGTTTCATCTCGCAGAGAAAAAACATGGAGGGAAAGCCGATTGTTTTCGACGAGAACGATGAAAGTGACACAGCCCTTTCTCAGTTGCAAACGTCATCCCATCCGAAGTCCGTGGTTTCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0006355 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007142 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043934 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0060255 GO:0061983 GO:0065007 GO:0071840 GO:0080090 GO:0140013 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.02

Weight (kDa)

5.45

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06660 AT2G30820 AT2G30820
fragaria_vesca	FvH4_6g38770 FvH4_6g38770 FvH4_6g38770
malus_domestica	MD00G1163200.v1.1 MD00G1163300.v1.1 MD09G1146900.v1.1 MD17G1133500.v1.1
prunus_persica	Prupe.3G178400_v2.0.a1 Prupe.3G178400_v2.0.a1
pyrus_communis	pycom09g06740 pycom17g12800
rosa_chinensis	RchiOBHm_Chr2g0152321
rosa_laevigata	RLG00000020628
rosa_multiflora	Rmu_sc0004002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095800
rosa_rugosa	Rorug02G0432300 Rorug02G0432400
rosa_samantha	Rh2AG493900 Rh2BG506200 Rh2CG480200 Rh2DG517300
rosa_wichuraiana	Rw2G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccII	CGCG	1 cut(s)	44
AciI	CCGC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	143, 201
AgsI	TTSAA	2 cut(s)	228, 272
AhdI	GACNNNNNGTC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	94
AleI	CACNNNNGTG	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	97, 134
ApoI	RAATTY	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	99
BauI	CACGAG	1 cut(s)	183
BccI	CCATC	2 cut(s)	200, 411
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	96
BmeRI	GACNNNNNGTC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 201
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	3 cut(s)	211, 398, 403
BseLI	CCNNNNNNNGG	2 cut(s)	143, 201
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	99, 136
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	143, 201
BsmAI	GTCTC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	99, 136
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	99, 136
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	414
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	3 cut(s)	211, 398, 403
BstFNI	CGCG	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	99, 136
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	211, 398, 403
BtsIMutI	CAGTG	2 cut(s)	160, 290
Cac8I	GCNNGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	2 cut(s)	257, 328
CviJI	RGCY	7 cut(s)	49, 55, 99, 136, 148, 340, 377
CviKI_1	RGCY	7 cut(s)	49, 55, 99, 136, 148, 340, 377
DdeI	CTNAG	1 cut(s)	384
DriI	GACNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	260, 331
FaiI	YATR	4 cut(s)	90, 180, 258, 329
FatI	CATG	2 cut(s)	256, 327
FokI	GGATG	3 cut(s)	218, 385, 390
HaeIII	GGCC	2 cut(s)	99, 136
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	2 cut(s)	260, 331
HinfI	GANTC	2 cut(s)	29, 216
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	298, 408, 428
Hpy188III	TCNNGA	2 cut(s)	9, 65
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	260, 331
LpnPI	CCDG	6 cut(s)	69, 81, 108, 118, 138, 148
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	58, 368
MboII	GAAGA	4 cut(s)	129, 182, 284, 311
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	3 cut(s)	10, 239, 325
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MslI	CAYNNNNRTG	3 cut(s)	165, 183, 196
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	44
NlaIII	CATG	2 cut(s)	260, 331
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	196
PaeI	GCATGC	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	29, 216
PflMI	CCANNNNNTGG	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
RseI	CAYNNNNRTG	3 cut(s)	165, 183, 196
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	4 cut(s)	21, 250, 281, 398
SmiMI	CAYNNNNRTG	3 cut(s)	165, 183, 196
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	351
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	29, 216
TscAI	CASTG	2 cut(s)	167, 297
TseFI	GTSAC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	5 cut(s)	183, 189, 298, 378, 411
TspGWI	ACGGA	2 cut(s)	228, 403
TspRI	CASTG	2 cut(s)	167, 297
Van91I	CCANNNNNTGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.