Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007137

Physical Location & Seq

Genomic Coordinates Forward (+)

13129492 .. 13132945

Gene Structure 3454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGTTGTCTCTTCGGTTGCTTCCGTGCTAAAGACGACGAATCTACTACTGATTCCGTTTCTCAAGCCAAACATAACAGAGGTCATGAGTCGAAGAATCGTTTGTCAGCTTTGTTTCTATCTGAAGCTTCGTCGCCTTGCCATGATGACAGAGAGGGATCTAGTTTGAATTCTATGCATATTGATAAAGATCTCAAGGATGACGCACAGTTTCTTAAAGTTTCCTGCGAAATACCAGCGACACCAATTGAAGTTAGGAACACATCCAAAAAACTGGAAACTCCTAAAGGTGGTGAACATTTACGATCTTCCCCTTCCTGTAACTCTGAAGTAGTGTTTCACTTGAATGAGAAAAAGAATGAGCCCTGTGAAGAAATGGGAAGATCATTAGATACTTCAGAGCAAACTCCTAGCAGTTGCTTGACCGATGCCCGGAACAATGCAAGGATCTCTTCTGCATCTAGTGATGATAGTGAAGAAAGCATTGGTACTGTGTTCAGGGATGAGGTGGATAGAACCGGCGTTAGAGAAAAGACAAAGTCAGTGCGGTCTGAAATTGACTTTGGTCAATCTTACTCTTCTAGTTCTTCCAAAAACAGAACTGCAAGCAAACCTGAAATGGTTGGAAAAACTTCTATCTCAGCTACCTCGCCTTATACAACCTCAATGAAGCTATCCGATGAGATTCAAACCCCTGGAACCATTTTTCCTGCAAATATGGAATCAGCAGGAAGAGAGAGACGTAGAATCAGGTCTCAGTTTGTGCATTCAGCTTCCAATCTAATTGTGAATGCCTCCCTATGTAAGCTCCACGAAGATTCAAATGCGAACCTAGAACAAGCTAAAGTTCAGGCTTACAAAGAGAAGACAGAAAATGAATCTCCCACATCAACAATATGTGGGGAAAAGTTGGAAGAGAGTTCAGATGGAAAAAAACAGATAGGTGAAATTAGTAGTTCTCCTTTATCCATAAATCCTGGAGACAGACCTATCATTGGAATGGTTGCTGCTCATTGGAATGAGAAAGAGCATTCTCAAATCTCACCCAAATGGTGGGATGGTAATGGGATACCAAACTCTACAAACAAGTACAAAGAGGACCAGAAAGTGAGTTGGCATGCAACACCTTTCGAAGAGAGATTAGAGAAGGCACTTTCAGAAGAAGGTGGTCAAGGTTTCATTCCTCCAAGGAGACTTGGAACAGTAGAAGAGTCTGAAAGGGACACAGCTATATCACATCTGCGACATTCAGTCATTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0006355 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007142 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043934 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0060255 GO:0061983 GO:0065007 GO:0071840 GO:0080090 GO:0140013 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

46.52

Weight (kDa)

5.72

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06660 AT2G30820 AT2G30820
fragaria_vesca	FvH4_6g38770 FvH4_6g38770 FvH4_6g38770
malus_domestica	MD00G1163200.v1.1 MD00G1163300.v1.1 MD09G1146900.v1.1 MD17G1133500.v1.1
prunus_persica	Prupe.3G178400_v2.0.a1 Prupe.3G178400_v2.0.a1
pyrus_communis	pycom09g06740 pycom17g12800
rosa_chinensis	RchiOBHm_Chr2g0152321
rosa_laevigata	RLG00000020628
rosa_multiflora	Rmu_sc0004002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095800
rosa_rugosa	Rorug02G0432300 Rorug02G0432400
rosa_samantha	Rh2AG493900 Rh2BG506200 Rh2CG480200 Rh2DG517300
rosa_wichuraiana	Rw2G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1053
AciI	CCGC	1 cut(s)	547
AclWI	GGATC	2 cut(s)	166, 455
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	3 cut(s)	144, 348, 381
AfaI	GTAC	2 cut(s)	490, 1091
AfiI	CCNNNNNNNGG	4 cut(s)	290, 432, 995, 1053
AgsI	TTSAA	5 cut(s)	169, 251, 346, 689, 822
AhdI	GACNNNNNGTC	1 cut(s)	1250
AjnI	CCWGG	2 cut(s)	694, 976
AjuI	GAANNNNNNNTTGG	4 cut(s)	468, 500, 546, 578
AloI	GAACNNNNNNTCC	2 cut(s)	691, 723
AluBI	AGCT	8 cut(s)	110, 128, 644, 673, 773, 808, 842, 1229
AluI	AGCT	8 cut(s)	110, 128, 644, 673, 773, 808, 842, 1229
Alw26I	GTCTC	5 cut(s)	14, 733, 759, 975, 1186
AlwI	GGATC	2 cut(s)	166, 455
ApeKI	GCWGC	1 cut(s)	1007
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	1099
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	3 cut(s)	305, 956, 1035
AsuII	TTCGAA	1 cut(s)	1131
AvaII	GGWCC	1 cut(s)	1099
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	872
BbvI	GCAGC	1 cut(s)	994
BccI	CCATC	2 cut(s)	920, 1052
BciT130I	CCWGG	2 cut(s)	696, 978
BciVI	GTATCC	1 cut(s)	1062
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	5 cut(s)	14, 733, 759, 975, 1186
BfaI	CTAG	5 cut(s)	162, 411, 462, 582, 833
BfuI	GTATCC	1 cut(s)	1062
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	1 cut(s)	1008
BlsI	GCNGC	1 cut(s)	1009
Bme1390I	CCNGG	3 cut(s)	433, 696, 978
Bme18I	GGWCC	1 cut(s)	1099
BmeRI	GACNNNNNGTC	1 cut(s)	1250
BmgT120I	GGNCC	1 cut(s)	1099
BmiI	GGNNCC	1 cut(s)	700
BmrFI	CCNGG	3 cut(s)	433, 696, 978
BmsI	GCATC	2 cut(s)	418, 467
BoxI	GACNNNNGTC	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	872
BpmI	CTGGAG	1 cut(s)	999
Bpu14I	TTCGAA	1 cut(s)	1131
BpuEI	CTTGAG	2 cut(s)	48, 179
BpuMI	CCSGG	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	759
BsaJI	CCNNGG	2 cut(s)	694, 1187
Bsc4I	CCNNNNNNNGG	4 cut(s)	290, 432, 995, 1053
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	696, 978
BseDI	CCNNGG	2 cut(s)	694, 1187
BseGI	GGATG	4 cut(s)	205, 263, 508, 1063
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	290, 432, 995, 1053
BseMII	CTCAG	2 cut(s)	654, 770
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	994
BsiSI	CCGG	2 cut(s)	433, 519
BslFI	GGGAC	1 cut(s)	1235
BslI	CCNNNNNNNGG	4 cut(s)	290, 432, 995, 1053
BsmAI	GTCTC	5 cut(s)	14, 733, 759, 975, 1186
BsmBI	CGTCTC	1 cut(s)	733
BsmFI	GGGAC	1 cut(s)	1235
BsmI	GAATGC	3 cut(s)	766, 796, 1030
Bso31I	GGTCTC	1 cut(s)	759
Bsp119I	TTCGAA	1 cut(s)	1131
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	158, 190, 305, 383, 447
BspACI	CCGC	1 cut(s)	547
BspCNI	CTCAG	2 cut(s)	653, 769
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	700
BspPI	GGATC	2 cut(s)	166, 455
BspT104I	TTCGAA	1 cut(s)	1131
BspTNI	GGTCTC	1 cut(s)	759
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	694, 1187
BssMI	GATC	5 cut(s)	158, 190, 305, 383, 447
BssT1I	CCWWGG	1 cut(s)	1187
Bst2UI	CCWGG	2 cut(s)	696, 978
Bst4CI	ACNGT	3 cut(s)	210, 493, 1204
Bst6I	CTCTTC	7 cut(s)	17, 457, 583, 727, 909, 1128, 1203
BstBI	TTCGAA	1 cut(s)	1131
BstC8I	GCNNGC	2 cut(s)	607, 1119
BstDEI	CTNAG	2 cut(s)	640, 756
BstF5I	GGATG	4 cut(s)	205, 263, 508, 1063
BstKTI	GATC	5 cut(s)	161, 193, 308, 386, 450
BstMAI	GTCTC	5 cut(s)	14, 733, 759, 975, 1186
BstMBI	GATC	5 cut(s)	158, 190, 305, 383, 447
BstNI	CCWGG	2 cut(s)	696, 978
BstNSI	RCATGY	1 cut(s)	1121
BstPAI	GACNNNNGTC	1 cut(s)	564
BstSCI	CCNGG	3 cut(s)	431, 694, 976
BstV1I	GCAGC	1 cut(s)	994
BstV2I	GAAGAC	1 cut(s)	872
BstX2I	RGATCY	3 cut(s)	158, 190, 447
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	3 cut(s)	158, 190, 447
BsuI	GTATCC	1 cut(s)	1062
BtsCI	GGATG	4 cut(s)	205, 263, 508, 1063
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	2 cut(s)	607, 1119
CciI	TCATGA	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	1099
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	489, 1090
CviAII	CATG	3 cut(s)	86, 143, 1118
CviQI	GTAC	2 cut(s)	489, 1090
DdeI	CTNAG	2 cut(s)	640, 756
DpnI	GATC	5 cut(s)	160, 192, 307, 385, 449
DpnII	GATC	5 cut(s)	158, 190, 305, 383, 447
DriI	GACNNNNNGTC	1 cut(s)	1250
Eam1104I	CTCTTC	7 cut(s)	17, 457, 583, 727, 909, 1128, 1203
Eam1105I	GACNNNNNGTC	1 cut(s)	1250
EarI	CTCTTC	7 cut(s)	17, 457, 583, 727, 909, 1128, 1203
Eco130I	CCWWGG	1 cut(s)	1187
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	1099
Eco57I	CTGAAG	3 cut(s)	144, 348, 381
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	694, 976
EcoT14I	CCWWGG	1 cut(s)	1187
EcoT22I	ATGCAT	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	1187
Esp3I	CGTCTC	1 cut(s)	733
FaeI	CATG	3 cut(s)	89, 146, 1121
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	1 cut(s)	1235
FatI	CATG	3 cut(s)	85, 142, 1117
Fnu4HI	GCNGC	1 cut(s)	1008
FokI	GGATG	4 cut(s)	212, 250, 515, 1070
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	1008
FspBI	CTAG	5 cut(s)	162, 411, 462, 582, 833
GluI	GCNGC	1 cut(s)	1008
GsuI	CTGGAG	1 cut(s)	999
HapII	CCGG	2 cut(s)	433, 519
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	89, 146, 1121
HindIII	AAGCTT	1 cut(s)	126
HpaII	CCGG	2 cut(s)	433, 519
HphI	GGTGA	3 cut(s)	305, 956, 1035
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	8 cut(s)	124, 328, 400, 553, 679, 925, 1159, 1216
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	2 cut(s)	41, 136
HpyAV	CCTTC	3 cut(s)	324, 1141, 1157
HpyCH4III	ACNGT	3 cut(s)	210, 493, 1204
HpyCH4IV	ACGT	1 cut(s)	742
HpyCH4V	TGCA	7 cut(s)	178, 443, 458, 605, 713, 766, 1121
HpyF3I	CTNAG	2 cut(s)	640, 756
HpySE526I	ACGT	1 cut(s)	742
Hsp92II	CATG	3 cut(s)	89, 146, 1121
Kzo9I	GATC	5 cut(s)	158, 190, 305, 383, 447
LmnI	GCTCC	1 cut(s)	813
Lsp1109I	GCAGC	1 cut(s)	994
LweI	GCATC	2 cut(s)	418, 467
MaeI	CTAG	5 cut(s)	162, 411, 462, 582, 833
MaeII	ACGT	1 cut(s)	742
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	5 cut(s)	160, 192, 307, 385, 449
MboI	GATC	5 cut(s)	158, 190, 305, 383, 447
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	3 cut(s)	158, 190, 447
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	5 cut(s)	169, 246, 555, 783, 948
MlyI	GAGTC	2 cut(s)	98, 1220
MmeI	TCCRAC	2 cut(s)	604, 891
MnlI	CCTC	8 cut(s)	74, 148, 499, 658, 673, 805, 1090, 1194
Mph1103I	ATGCAT	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	631
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	4 cut(s)	345, 998, 1017, 1048
MspI	CCGG	2 cut(s)	433, 519
MspR9I	CCNGG	3 cut(s)	433, 696, 978
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	3 cut(s)	766, 796, 1030
MvaI	CCWGG	2 cut(s)	696, 978
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	5 cut(s)	158, 190, 305, 383, 447
NlaIII	CATG	3 cut(s)	89, 146, 1121
NlaIV	GGNNCC	1 cut(s)	700
NsiI	ATGCAT	1 cut(s)	180
NspI	RCATGY	1 cut(s)	1121
NspV	TTCGAA	1 cut(s)	1131
PaeI	GCATGC	1 cut(s)	1121
PagI	TCATGA	1 cut(s)	85
PctI	GAATGC	3 cut(s)	766, 796, 1030
PdmI	GAANNNNTTC	1 cut(s)	631
PfeI	GAWTC	8 cut(s)	41, 53, 97, 685, 722, 747, 818, 878
PflFI	GACNNNGTC	1 cut(s)	538
PflMI	CCANNNNNTGG	1 cut(s)	1053
PfoI	TCCNGGA	1 cut(s)	976
PkrI	GCNGC	1 cut(s)	1009
PleI	GAGTC	2 cut(s)	97, 1219
PpsI	GAGTC	2 cut(s)	97, 1219
PshAI	GACNNNNGTC	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	694, 976
PspGI	CCWGG	2 cut(s)	694, 976
PspN4I	GGNNCC	1 cut(s)	700
PspPI	GGNCC	1 cut(s)	1099
PsuI	RGATCY	3 cut(s)	158, 190, 447
PsyI	GACNNNGTC	1 cut(s)	538
RsaI	GTAC	2 cut(s)	490, 1091
RsaNI	GTAC	2 cut(s)	489, 1090
RseI	CAYNNNNRTG	4 cut(s)	345, 998, 1017, 1048
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	1008
Sau3AI	GATC	5 cut(s)	158, 190, 305, 383, 447
Sau96I	GGNCC	1 cut(s)	1099
SchI	GAGTC	2 cut(s)	98, 1220
ScrFI	CCNGG	3 cut(s)	433, 696, 978
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	2 cut(s)	418, 467
SfuI	TTCGAA	1 cut(s)	1131
SinI	GGWCC	1 cut(s)	1099
SmiMI	CAYNNNNRTG	4 cut(s)	345, 998, 1017, 1048
SmlI	CTYRAG	2 cut(s)	63, 194
SmoI	CTYRAG	2 cut(s)	63, 194
SphI	GCATGC	1 cut(s)	1121
Sse9I	AATT	5 cut(s)	169, 246, 555, 783, 948
SsiI	CCGC	1 cut(s)	547
SspMI	CTAG	5 cut(s)	162, 411, 462, 582, 833
StyD4I	CCNGG	3 cut(s)	431, 694, 976
StyI	CCWWGG	1 cut(s)	1187
TaaI	ACNGT	3 cut(s)	210, 493, 1204
TaiI	ACGT	1 cut(s)	745
TaqI	TCGA	2 cut(s)	92, 1131
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	5 cut(s)	169, 246, 555, 783, 948
TatI	WGTACW	1 cut(s)	1089
TfiI	GAWTC	8 cut(s)	41, 53, 97, 685, 722, 747, 818, 878
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	1 cut(s)	1007
TspDTI	ATGAA	3 cut(s)	683, 891, 1168
TspGWI	ACGGA	2 cut(s)	14, 46
TspRI	CASTG	1 cut(s)	549
Tth111I	GACNNNGTC	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	1053
VpaK11BI	GGWCC	1 cut(s)	1099
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	1121
XmnI	GAANNNNTTC	1 cut(s)	631
XspI	CTAG	5 cut(s)	162, 411, 462, 582, 833
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.