FvH4_6g38770

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
30662936 .. 30666971
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38770.t3

Sequence Viewer

Length: 1518 bp
ATGTTATGCTTCAATCGTGAATTAGGGTTTGTGTGCAGATCCGTGTTGAGGTTTCTTGACAGATCGCTCGCCGGAGCCATGGGCTGCTTCTTTGGTTGCTTCAGAGTCAGGGACGATCGCCACCTCCGCTCCAGGCCTAACCTCGTTTCCCACTCCTCCCGCTCGGGAGCTGTGGTGTCTCAGAACCGTTTGGCATCTCTATTTTTAGACCAAGAGAAAGGAGAATCTCCATCCAGAGATAAGGAAAGTCCTGGTTATGGGACTCCACAAACTGAAAAGGATCTCAAGAATGAGGCCAAATTTCTTAAGGCTTGTGGTACTATAGTTGAGACCCCAGTTGAAATCCGGAAAGCTTCAAAGTTTAATGGCTCACCCCATCATGATAGAGATTCGGAGCCGTCAAAATTCAACTCATGGCTTCCCAACACATCCATTAAAAAGCTTCAGCAGGAGAATCAACCAGAGCAGCCTCCTACACCTGTTAAACTTTTTGAGCAGTGGAGAACGGGGTCAGAGCATACACCTATCAGTTATGAGTCAAACCAACAGAGTACTGGAAGGAGCTTTCTCAGCTCTACTGAAGGTAGTGGAATAGGTACTGCTTCATCAGTAAAGATTCATTCTGATCGGGCTGAGAACACTGTAACTCCAACTTCACCTTCCCACTCGGCCACAGATGTCCAGGGGAGGGGAAAGTCTGTTCGCTTTGAATGTGACTTTGACACAGCATCCTCAAAAGGTTCTTCATCTGGTAACTATAGCAGGAGTGTAAAAATAGCTGAAACTCCAGGAAAACAGGGCACATCAAAGTATTCAGATTATCCAACCCCGCTGACTCTCTCTGAAGAGATGCAGACACCTGGAACAGTTTATCCATCAGGCCAGGGAACTTTTCCTAATGGAAAGTCTCGAATCAGGTCTCAGTTTGTGTATTCATTTCCATACCCTGAGGGCACCTCTCGGTGGAATGTACCGGAAGAGGAAGATTCTAACTCACATGGGTCTTCATTTGAGCCTAGTGTGTCTCTCAAACAATCTGGAAATGCAACCCCCATATCAGAAGAGGGGAAAAAAGATATTTCATCTGGAAAGGAGTTACAGGTGGAATCAAGTATGTCTGCCTGGCTGGAGCCAGTGACTCAAGATGACAACAATCCGAATTTGGGAGATGCTTCTGTCAGAAACCGTTATTTTGGCAGAACTCCTGGAGACAGGCCTATAATTGGTTTGGTTGCTACTCACTGGAATGAAGATGACTCTACTCGTATCTCGCCCAAGTGGTGGGATGGGAATGGAATCCCAAATTCAACCAATAAATACAAAGAGGATCAGAAAGTGAGTTGGCATGCGACACCATTTGAAGAGAGGCTGGAGAAGGCATTATCTGAAGAAACTTTCATCTCTCAGAGAAAAAACATAGAGGGAATGCCCATTGTGTTCGATGAGAATGAGGAAAGTGATACTGCTCTCTCTCAGTTGCAGTCTTCATCCCAGCCAAAGTCAGTGGTTTCATTCTGA

Protein Analysis

506

Amino Acids

55.96

Weight (kDa)

6.02

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 953
AccB7I CCANNNNNTGG 1 cut(s) 1281
AccBSI CCGCTC 2 cut(s) 129, 162
AccIII TCCGGA 1 cut(s) 345
AciI CCGC 3 cut(s) 127, 160, 830
AclWI GGATC 3 cut(s) 33, 288, 1335
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 4 cut(s) 299, 404, 1159, 1303
AcuI CTGAAG 5 cut(s) 85, 428, 600, 864, 1407
AfaI GTAC 4 cut(s) 319, 553, 598, 972
AfiI CCNNNNNNNGG 7 cut(s) 48, 257, 688, 963, 1163, 1223, 1281
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 7 cut(s) 13, 341, 357, 409, 710, 1308, 1361
AjnI CCWGG 8 cut(s) 131, 250, 681, 787, 859, 882, 1121, 1204
AjuI GAANNNNNNNTTGG 2 cut(s) 643, 675
AloI GAACNNNNNNTCC 4 cut(s) 684, 716, 856, 888
AluBI AGCT 6 cut(s) 170, 353, 442, 564, 573, 779
AluI AGCT 6 cut(s) 170, 353, 442, 564, 573, 779
Alw26I GTCTC 6 cut(s) 183, 323, 912, 924, 1029, 1203
AlwI GGATC 3 cut(s) 33, 288, 1335
Ama87I CYCGRG 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 345
AoxI GGCC 5 cut(s) 134, 294, 669, 880, 1214
ApeKI GCWGC 2 cut(s) 84, 466
ApoI RAATTY 4 cut(s) 299, 404, 1159, 1303
AsuHPI GGTGA 2 cut(s) 363, 648
AvaI CYCGRG 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 2 cut(s) 803, 956
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BanI GGYRCC 1 cut(s) 953
BbsI GAAGAC 2 cut(s) 996, 1476
BbvI GCAGC 2 cut(s) 71, 478
BccI CCATC 4 cut(s) 238, 384, 883, 1280
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
BcoDI GTCTC 6 cut(s) 183, 323, 912, 924, 1029, 1203
BfaI CTAG 1 cut(s) 1017
BfmI CTRYAG 2 cut(s) 321, 757
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 2 cut(s) 85, 467
BlsI GCNGC 2 cut(s) 86, 468
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
BmeT110I CYCGRG 1 cut(s) 163
BmiI GGNNCC 4 cut(s) 76, 396, 955, 1131
BmrFI CCNGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 4 cut(s) 203, 737, 840, 1159
BmuI ACTGGG 1 cut(s) 329
BpiI GAAGAC 2 cut(s) 996, 1476
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpmI CTGGAG 5 cut(s) 115, 771, 1148, 1227, 1391
BpuEI CTTGAG 2 cut(s) 269, 1125
BsaI GGTCTC 2 cut(s) 323, 924
BsaJI CCNNGG 3 cut(s) 78, 682, 883
BsaWI WCCGGW 2 cut(s) 345, 973
BsaXI ACNNNNNCTCC 6 cut(s) 113, 143, 159, 189, 631, 661
Bsc4I CCNNNNNNNGG 7 cut(s) 48, 257, 688, 963, 1163, 1223, 1281
Bse1I ACTGG 4 cut(s) 335, 559, 1133, 1247
Bse21I CCTNAGG 1 cut(s) 948
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
BseDI CCNNGG 3 cut(s) 78, 682, 883
BseGI GGATG 5 cut(s) 230, 428, 728, 1291, 1487
BseLI CCNNNNNNNGG 7 cut(s) 48, 257, 688, 963, 1163, 1223, 1281
BseMII CTCAG 7 cut(s) 194, 583, 624, 935, 939, 1418, 1487
BseNI ACTGG 4 cut(s) 335, 559, 1133, 1247
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 2 cut(s) 803, 956
BseXI GCAGC 2 cut(s) 71, 478
BseYI CCCAGC 1 cut(s) 1491
BsgI GTGCAG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 5 cut(s) 136, 296, 671, 882, 1216
BshNI GGYRCC 1 cut(s) 953
BsiEI CGRYCG 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 3 cut(s) 72, 346, 974
BslFI GGGAC 2 cut(s) 125, 274
BslI CCNNNNNNNGG 7 cut(s) 48, 257, 688, 963, 1163, 1223, 1281
BsmAI GTCTC 6 cut(s) 183, 323, 912, 924, 1029, 1203
BsmFI GGGAC 2 cut(s) 125, 274
BsmI GAATGC 1 cut(s) 1431
BsnI GGCC 5 cut(s) 136, 296, 671, 882, 1216
Bso31I GGTCTC 2 cut(s) 323, 924
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 803, 956
Bsp13I TCCGGA 1 cut(s) 345
Bsp143I GATC 6 cut(s) 38, 62, 115, 280, 625, 1327
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 3 cut(s) 127, 160, 830
BspANI GGCC 5 cut(s) 136, 296, 671, 882, 1216
BspCNI CTCAG 7 cut(s) 193, 582, 625, 934, 940, 1417, 1486
BspEI TCCGGA 1 cut(s) 345
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 76, 396, 955, 1131
BspPI GGATC 3 cut(s) 33, 288, 1335
BspT107I GGYRCC 1 cut(s) 953
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 2 cut(s) 323, 924
BsrBI CCGCTC 2 cut(s) 129, 162
BsrI ACTGG 4 cut(s) 335, 559, 1133, 1247
BssECI CCNNGG 3 cut(s) 78, 682, 883
BssMI GATC 6 cut(s) 38, 62, 115, 280, 625, 1327
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
Bst4CI ACNGT 4 cut(s) 188, 643, 868, 1187
Bst6I CTCTTC 4 cut(s) 840, 972, 1056, 1356
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 69, 1347
BstDEI CTNAG 7 cut(s) 180, 569, 633, 921, 948, 1404, 1473
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 5 cut(s) 230, 428, 728, 1291, 1487
BstKTI GATC 6 cut(s) 41, 65, 118, 283, 628, 1330
BstMAI GTCTC 6 cut(s) 183, 323, 912, 924, 1029, 1203
BstMBI GATC 6 cut(s) 38, 62, 115, 280, 625, 1327
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 126, 570
BstNI CCWGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
BstNSI RCATGY 1 cut(s) 1349
BstSCI CCNGG 8 cut(s) 131, 250, 681, 787, 859, 882, 1121, 1204
BstSFI CTRYAG 2 cut(s) 321, 757
BstSLI GKGCMC 2 cut(s) 803, 956
BstV1I GCAGC 2 cut(s) 71, 478
BstV2I GAAGAC 2 cut(s) 996, 1476
BstX2I RGATCY 2 cut(s) 38, 280
BstYI RGATCY 2 cut(s) 38, 280
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 5 cut(s) 136, 296, 671, 882, 1216
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 5 cut(s) 230, 428, 728, 1291, 1487
BtsI GCAGTG 1 cut(s) 503
BtsIMutI CAGTG 5 cut(s) 503, 639, 1140, 1240, 1509
Cac8I GCNNGC 2 cut(s) 69, 1347
CciI TCATGA 1 cut(s) 379
Csp6I GTAC 4 cut(s) 318, 552, 597, 971
CspCI CAANNNNNGTGG 1 cut(s) 1485
CviAII CATG 5 cut(s) 79, 380, 414, 998, 1346
CviQI GTAC 4 cut(s) 318, 552, 597, 971
DdeI CTNAG 7 cut(s) 180, 569, 633, 921, 948, 1404, 1473
DpnI GATC 6 cut(s) 40, 64, 117, 282, 627, 1329
DpnII GATC 6 cut(s) 38, 62, 115, 280, 625, 1327
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 4 cut(s) 840, 972, 1056, 1356
EarI CTCTTC 4 cut(s) 840, 972, 1056, 1356
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 2 cut(s) 136, 1216
Eco31I GGTCTC 2 cut(s) 323, 924
Eco57I CTGAAG 5 cut(s) 85, 428, 600, 864, 1407
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 163
EcoRII CCWGG 8 cut(s) 131, 250, 681, 787, 859, 882, 1121, 1204
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 5 cut(s) 82, 383, 417, 1001, 1349
FaqI GGGAC 2 cut(s) 125, 274
FatI CATG 5 cut(s) 78, 379, 413, 997, 1345
FauI CCCGC 2 cut(s) 167, 837
Fnu4HI GCNGC 2 cut(s) 85, 467
FokI GGATG 5 cut(s) 217, 415, 715, 1298, 1474
Fsp4HI GCNGC 2 cut(s) 85, 467
FspBI CTAG 1 cut(s) 1017
GluI GCNGC 2 cut(s) 85, 467
GsaI CCCAGC 1 cut(s) 1495
GsuI CTGGAG 5 cut(s) 115, 771, 1148, 1227, 1391
HaeIII GGCC 5 cut(s) 136, 296, 671, 882, 1216
HapII CCGG 3 cut(s) 72, 346, 974
Hin1II CATG 5 cut(s) 82, 383, 417, 1001, 1349
HindIII AAGCTT 2 cut(s) 351, 440
HpaII CCGG 3 cut(s) 72, 346, 974
HphI GGTGA 2 cut(s) 363, 648
HpyAV CCTTC 4 cut(s) 552, 575, 669, 1369
HpyCH4III ACNGT 4 cut(s) 188, 643, 868, 1187
HpyCH4V TGCA 4 cut(s) 36, 853, 1046, 1480
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 570
HpyF3I CTNAG 7 cut(s) 180, 569, 633, 921, 948, 1404, 1473
Hsp92II CATG 5 cut(s) 82, 383, 417, 1001, 1349
Kpn2I TCCGGA 1 cut(s) 345
Kzo9I GATC 6 cut(s) 38, 62, 115, 280, 625, 1327
LmnI GCTCC 6 cut(s) 74, 134, 167, 394, 561, 1129
Lsp1109I GCAGC 2 cut(s) 71, 478
LweI GCATC 4 cut(s) 203, 737, 840, 1159
MaeI CTAG 1 cut(s) 1017
MaeIII GTNAC 5 cut(s) 643, 713, 752, 1095, 1135
MalI GATC 6 cut(s) 40, 64, 117, 282, 627, 1329
MbiI CCGCTC 2 cut(s) 129, 162
MboI GATC 6 cut(s) 38, 62, 115, 280, 625, 1327
MflI RGATCY 2 cut(s) 38, 280
MhlI GDGCHC 2 cut(s) 803, 956
MluCI AATT 6 cut(s) 20, 299, 404, 1159, 1221, 1303
MlyI GAGTC 6 cut(s) 114, 256, 545, 829, 1132, 1250
MmeI TCCRAC 2 cut(s) 674, 848
MroI TCCGGA 1 cut(s) 345
MseI TTAA 4 cut(s) 306, 363, 435, 483
MslI CAYNNNNRTG 1 cut(s) 1245
MspA1I CMGCKG 1 cut(s) 832
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 3 cut(s) 72, 346, 974
MspR9I CCNGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
Mva1269I GAATGC 1 cut(s) 1431
MvaI CCWGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
MwoI GCNNNNNNNGC 2 cut(s) 126, 570
NcoI CCATGG 1 cut(s) 78
NdeII GATC 6 cut(s) 38, 62, 115, 280, 625, 1327
NlaIII CATG 5 cut(s) 82, 383, 417, 1001, 1349
NlaIV GGNNCC 4 cut(s) 76, 396, 955, 1131
NmeAIII GCCGAG 1 cut(s) 647
NmuCI GTSAC 2 cut(s) 713, 1135
NspI RCATGY 1 cut(s) 1349
PaeI GCATGC 1 cut(s) 1349
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 2 cut(s) 136, 1216
PctI GAATGC 1 cut(s) 1431
PfeI GAWTC 8 cut(s) 224, 389, 454, 616, 912, 986, 1106, 1296
PflMI CCANNNNNTGG 1 cut(s) 1281
PfoI TCCNGGA 2 cut(s) 787, 1204
PkrI GCNGC 2 cut(s) 86, 468
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 6 cut(s) 113, 256, 544, 829, 1132, 1250
PpsI GAGTC 6 cut(s) 113, 256, 544, 829, 1132, 1250
Psp6I CCWGG 8 cut(s) 131, 250, 681, 787, 859, 882, 1121, 1204
PspFI CCCAGC 1 cut(s) 1491
PspGI CCWGG 8 cut(s) 131, 250, 681, 787, 859, 882, 1121, 1204
PspN4I GGNNCC 4 cut(s) 76, 396, 955, 1131
PsuI RGATCY 2 cut(s) 38, 280
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 4 cut(s) 319, 553, 598, 972
RsaNI GTAC 4 cut(s) 318, 552, 597, 971
RseI CAYNNNNRTG 1 cut(s) 1245
SaqAI TTAA 4 cut(s) 306, 363, 435, 483
SatI GCNGC 2 cut(s) 85, 467
Sau3AI GATC 6 cut(s) 38, 62, 115, 280, 625, 1327
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 6 cut(s) 114, 256, 545, 829, 1132, 1250
ScrFI CCNGG 8 cut(s) 133, 252, 683, 789, 861, 884, 1123, 1206
SduI GDGCHC 2 cut(s) 803, 956
SfaNI GCATC 4 cut(s) 203, 737, 840, 1159
SfcI CTRYAG 2 cut(s) 321, 757
SmiMI CAYNNNNRTG 1 cut(s) 1245
SmlI CTYRAG 3 cut(s) 284, 305, 1140
SmoI CTYRAG 3 cut(s) 284, 305, 1140
SphI GCATGC 1 cut(s) 1349
Sse9I AATT 6 cut(s) 20, 299, 404, 1159, 1221, 1303
SseBI AGGCCT 2 cut(s) 136, 1216
SsiI CCGC 3 cut(s) 127, 160, 830
SspMI CTAG 1 cut(s) 1017
StuI AGGCCT 2 cut(s) 136, 1216
StyD4I CCNGG 8 cut(s) 131, 250, 681, 787, 859, 882, 1121, 1204
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 4 cut(s) 188, 643, 868, 1187
TaqI TCGA 2 cut(s) 910, 1440
TasI AATT 6 cut(s) 20, 299, 404, 1159, 1221, 1303
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 8 cut(s) 224, 389, 454, 616, 912, 986, 1106, 1296
Tru1I TTAA 4 cut(s) 306, 363, 435, 483
Tru9I TTAA 4 cut(s) 306, 363, 435, 483
TscAI CASTG 5 cut(s) 503, 646, 1140, 1247, 1509
TseFI GTSAC 2 cut(s) 713, 1135
TseI GCWGC 2 cut(s) 84, 466
Tsp45I GTSAC 2 cut(s) 713, 1135
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 5 cut(s) 503, 646, 1140, 1247, 1509
Van91I CCANNNNNTGG 1 cut(s) 1281
Vha464I CTTAAG 1 cut(s) 305
XapI RAATTY 4 cut(s) 299, 404, 1159, 1303
XceI RCATGY 1 cut(s) 1349
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XspI CTAG 1 cut(s) 1017
ZrmI AGTACT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.