Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007137

Physical Location & Seq

Genomic Coordinates Reverse (-)

74086493 .. 74090580

Gene Structure 4088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG517300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGATTCTGCAGGCCAAATTTCTTAAGGCTTGTGGTACTATAGTTGAGACCCCAGTTGAAATTCGGAAAGCTTCAAAGTTAATTGGCTCACCCCATCATGATAGAGATTCAGAGCCCTCAAAATTCAACTCATGGCTTCCCAACACATCCATTAAAAAGCTTCAGCAGGAGAATCAACCAGAGCAGCCTCCTACACCTGTTAAACTTTTTGAAGAGTGGGGAAAGGGGTCAGAGCATACACCTATCAGTTATGAGACAAACCAACAGGGTACTGGAAGAAGCTCTCTCAGCTCTACTGAAGCCACAGATGTCCAGTGCAGGGGCAAGTCTGTTCGCTTTGAATGTGATTTTGATACAGCATCCTCAAAAGGTTCTTCATCTGGTAACTGTAGCAGGAGTGCAAAAATAGCTGAAACTCCTGGAAAACAGGGCACATCAAAGTATTCAGATTATCCAACCCCACTGACTCTTTCTGACGAGATGCAGACACCTGGAACGGTTTACCCATCAAGCCAGAGAACTTTTCCTAATGGAAAGTCTCGAATCAGGTCCCAGTATGTGTATTCAGTTCCAAACCCTGAGGGCATCTCTCGGTGGAATGTGCTGACAGAGGAAGATTCTAACTCACATGGGTTTTCAGGTGAGCCTAGTGAGTCTCTGAAACAATCCGGAAATGCAACCCCCATATCAGAAGAGGGGCAAAAAGAAATTTCATCTGGAAAAGACTTACAGGCGGAATCAAGTATGTCCTCCTGGCAGAAGCCAGTGACATCTACTCAAGATGACAACAATCTGAAGTTGGGAGACGCTTCTGGCAGAAATCGTTATTTTGGCAGAACTCCTGGGGACAGGCCTATAATTGGGTTGGTTGCTACTCACTGGAATGAAGATGACGCTACTCGTATCTCCCCCAAGTGGTGGGACGGGAAGGGAATCCCAAATTCAACCAATAAATACAAAGAGGATCAGAAAGTGAGTTGGCATGCGACACCGTTTGAGGAGAGGTTGGAGAAGGCATTGTCTGAAGAAAGTTTCATTTCTCAGAGAAAAAACATAGGGGGAATGCCCATTGTGTTCGATGAGAACGAAGAAAGTGATACTGCTCTTTCTCAGTTGCAATCTTCATCCCAGCCAAAGTCAGTGGTTTCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0006355 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007142 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043934 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0060255 GO:0061983 GO:0065007 GO:0071840 GO:0080090 GO:0140013 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

42.43

Weight (kDa)

5.7

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06660 AT2G30820 AT2G30820
fragaria_vesca	FvH4_6g38770 FvH4_6g38770 FvH4_6g38770
malus_domestica	MD00G1163200.v1.1 MD00G1163300.v1.1 MD09G1146900.v1.1 MD17G1133500.v1.1
prunus_persica	Prupe.3G178400_v2.0.a1 Prupe.3G178400_v2.0.a1
pyrus_communis	pycom09g06740 pycom17g12800
rosa_chinensis	RchiOBHm_Chr2g0152321
rosa_laevigata	RLG00000020628
rosa_multiflora	Rmu_sc0004002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095800
rosa_rugosa	Rorug02G0432300 Rorug02G0432400
rosa_samantha	Rh2AG493900 Rh2BG506200 Rh2CG480200 Rh2DG517300
rosa_wichuraiana	Rw2G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	918
AccIII	TCCGGA	1 cut(s)	668
AciI	CCGC	1 cut(s)	734
AclWI	GGATC	1 cut(s)	972
AcsI	RAATTY	5 cut(s)	17, 60, 122, 708, 940
AcuI	CTGAAG	4 cut(s)	146, 318, 815, 1044
AfaI	GTAC	2 cut(s)	37, 271
AfiI	CCNNNNNNNGG	4 cut(s)	319, 860, 915, 918
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	6 cut(s)	59, 75, 127, 212, 341, 945
AjnI	CCWGG	4 cut(s)	418, 490, 752, 841
AluBI	AGCT	5 cut(s)	71, 160, 282, 291, 410
AluI	AGCT	5 cut(s)	71, 160, 282, 291, 410
Alw26I	GTCTC	5 cut(s)	41, 248, 543, 660, 798
AlwI	GGATC	1 cut(s)	972
Aor13HI	TCCGGA	1 cut(s)	668
AoxI	GGCC	2 cut(s)	12, 851
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	5 cut(s)	17, 60, 122, 708, 940
AspS9I	GGNCC	1 cut(s)	549
AsuHPI	GGTGA	2 cut(s)	81, 653
AvaII	GGWCC	1 cut(s)	549
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	1 cut(s)	434
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	102, 514
BciT130I	CCWGG	4 cut(s)	420, 492, 754, 843
BcoDI	GTCTC	5 cut(s)	41, 248, 543, 660, 798
BfaI	CTAG	1 cut(s)	648
BfmI	CTRYAG	3 cut(s)	8, 39, 388
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	4 cut(s)	420, 492, 754, 843
Bme18I	GGWCC	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	4 cut(s)	420, 492, 754, 843
BmrI	ACTGGG	2 cut(s)	47, 547
BmsI	GCATC	3 cut(s)	368, 471, 594
BmuI	ACTGGG	2 cut(s)	47, 547
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpuEI	CTTGAG	1 cut(s)	762
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	842
BsaWI	WCCGGW	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	4 cut(s)	319, 860, 915, 918
Bse1I	ACTGG	6 cut(s)	53, 277, 313, 553, 764, 884
Bse21I	CCTNAGG	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	668
BseBI	CCWGG	4 cut(s)	420, 492, 754, 843
BseDI	CCNNGG	1 cut(s)	842
BseGI	GGATG	3 cut(s)	146, 359, 1124
BseLI	CCNNNNNNNGG	4 cut(s)	319, 860, 915, 918
BseMII	CTCAG	4 cut(s)	301, 570, 1055, 1124
BseNI	ACTGG	6 cut(s)	53, 277, 313, 553, 764, 884
BseRI	GAGGAG	1 cut(s)	1013
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	1128
BsgI	GTGCAG	1 cut(s)	337
BshFI	GGCC	2 cut(s)	14, 853
BsiSI	CCGG	1 cut(s)	669
BslFI	GGGAC	3 cut(s)	535, 860, 935
BslI	CCNNNNNNNGG	4 cut(s)	319, 860, 915, 918
BsmAI	GTCTC	5 cut(s)	41, 248, 543, 660, 798
BsmBI	CGTCTC	1 cut(s)	798
BsmFI	GGGAC	3 cut(s)	535, 860, 935
BsmI	GAATGC	1 cut(s)	1068
BsnI	GGCC	2 cut(s)	14, 853
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	117, 434
Bsp13I	TCCGGA	1 cut(s)	668
Bsp143I	GATC	1 cut(s)	964
BspACI	CCGC	1 cut(s)	734
BspANI	GGCC	2 cut(s)	14, 853
BspCNI	CTCAG	4 cut(s)	300, 571, 1054, 1123
BspEI	TCCGGA	1 cut(s)	668
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	551
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	972
BspTI	CTTAAG	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	6 cut(s)	53, 277, 313, 553, 764, 884
BssECI	CCNNGG	1 cut(s)	842
BssMI	GATC	1 cut(s)	964
Bst2UI	CCWGG	4 cut(s)	420, 492, 754, 843
Bst4CI	ACNGT	3 cut(s)	389, 499, 993
Bst6I	CTCTTC	2 cut(s)	207, 687
BstAFI	CTTAAG	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	12, 984
BstDEI	CTNAG	4 cut(s)	287, 579, 1041, 1110
BstF5I	GGATG	3 cut(s)	146, 359, 1124
BstKTI	GATC	1 cut(s)	967
BstMAI	GTCTC	5 cut(s)	41, 248, 543, 660, 798
BstMBI	GATC	1 cut(s)	964
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 407
BstNI	CCWGG	4 cut(s)	420, 492, 754, 843
BstNSI	RCATGY	1 cut(s)	986
BstSCI	CCNGG	4 cut(s)	418, 490, 752, 841
BstSFI	CTRYAG	3 cut(s)	8, 39, 388
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	14, 853
BtsCI	GGATG	3 cut(s)	146, 359, 1124
BtsIMutI	CAGTG	5 cut(s)	320, 461, 771, 877, 1146
Cac8I	GCNNGC	2 cut(s)	12, 984
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	549
CseI	GACGC	2 cut(s)	815, 902
Csp6I	GTAC	2 cut(s)	36, 270
CspCI	CAANNNNNGTGG	1 cut(s)	1122
CviAII	CATG	4 cut(s)	98, 132, 629, 983
CviQI	GTAC	2 cut(s)	36, 270
DdeI	CTNAG	4 cut(s)	287, 579, 1041, 1110
DpnI	GATC	1 cut(s)	966
DpnII	GATC	1 cut(s)	964
Eam1104I	CTCTTC	2 cut(s)	207, 687
EarI	CTCTTC	2 cut(s)	207, 687
EciI	GGCGGA	1 cut(s)	749
Eco147I	AGGCCT	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	549
Eco57I	CTGAAG	4 cut(s)	146, 318, 815, 1044
Eco81I	CCTNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	549
EcoRII	CCWGG	4 cut(s)	418, 490, 752, 841
EcoT38I	GRGCYC	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	798
FaeI	CATG	4 cut(s)	101, 135, 632, 986
FaqI	GGGAC	3 cut(s)	535, 860, 935
FatI	CATG	4 cut(s)	97, 131, 628, 982
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	3 cut(s)	133, 346, 1111
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	648
GluI	GCNGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	1132
HaeIII	GGCC	2 cut(s)	14, 853
HapII	CCGG	1 cut(s)	669
HgaI	GACGC	2 cut(s)	815, 902
Hin1II	CATG	4 cut(s)	101, 135, 632, 986
HindIII	AAGCTT	2 cut(s)	69, 158
HinfI	GANTC	9 cut(s)	4, 107, 172, 466, 543, 617, 653, 737, 933
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	2 cut(s)	81, 653
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188III	TCNNGA	5 cut(s)	98, 540, 669, 717, 779
Hpy8I	GTNNAC	1 cut(s)	502
HpyAV	CCTTC	2 cut(s)	922, 1006
HpyCH4III	ACNGT	3 cut(s)	389, 499, 993
HpyCH4V	TGCA	6 cut(s)	10, 318, 401, 484, 677, 1117
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 407
HpyF3I	CTNAG	4 cut(s)	287, 579, 1041, 1110
Hsp92II	CATG	4 cut(s)	101, 135, 632, 986
Kpn2I	TCCGGA	1 cut(s)	668
Kzo9I	GATC	1 cut(s)	964
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	3 cut(s)	368, 471, 594
MaeI	CTAG	1 cut(s)	648
MaeIII	GTNAC	2 cut(s)	383, 766
MalI	GATC	1 cut(s)	966
MboI	GATC	1 cut(s)	964
MboII	GAAGA	9 cut(s)	224, 288, 366, 626, 704, 899, 1037, 1100, 1113
MhlI	GDGCHC	2 cut(s)	117, 434
MluCI	AATT	7 cut(s)	17, 60, 81, 122, 708, 858, 940
MlyI	GAGTC	2 cut(s)	460, 662
MmeI	TCCRAC	2 cut(s)	479, 987
MroI	TCCGGA	1 cut(s)	668
MseI	TTAA	4 cut(s)	24, 80, 153, 201
MslI	CAYNNNNRTG	1 cut(s)	882
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	4 cut(s)	420, 492, 754, 843
Mva1269I	GAATGC	1 cut(s)	1068
MvaI	CCWGG	4 cut(s)	420, 492, 754, 843
MwoI	GCNNNNNNNGC	2 cut(s)	288, 407
NdeII	GATC	1 cut(s)	964
NlaIII	CATG	4 cut(s)	101, 135, 632, 986
NlaIV	GGNNCC	1 cut(s)	551
NmuCI	GTSAC	1 cut(s)	766
NspI	RCATGY	1 cut(s)	986
PaeI	GCATGC	1 cut(s)	986
PagI	TCATGA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	1083
PctI	GAATGC	1 cut(s)	1068
PfeI	GAWTC	7 cut(s)	4, 107, 172, 543, 617, 737, 933
PflMI	CCANNNNNTGG	1 cut(s)	918
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	2 cut(s)	460, 661
PpsI	GAGTC	2 cut(s)	460, 661
PpuMI	RGGWCCY	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	549
Psp6I	CCWGG	4 cut(s)	418, 490, 752, 841
PspFI	CCCAGC	1 cut(s)	1128
PspGI	CCWGG	4 cut(s)	418, 490, 752, 841
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	1 cut(s)	549
PspPPI	RGGWCCY	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	12
RsaI	GTAC	2 cut(s)	37, 271
RsaNI	GTAC	2 cut(s)	36, 270
RseI	CAYNNNNRTG	1 cut(s)	882
SaqAI	TTAA	4 cut(s)	24, 80, 153, 201
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	964
Sau96I	GGNCC	1 cut(s)	549
SchI	GAGTC	2 cut(s)	460, 662
ScrFI	CCNGG	4 cut(s)	420, 492, 754, 843
SduI	GDGCHC	2 cut(s)	117, 434
SfaNI	GCATC	3 cut(s)	368, 471, 594
SfcI	CTRYAG	3 cut(s)	8, 39, 388
SinI	GGWCC	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	882
SmlI	CTYRAG	2 cut(s)	23, 777
SmoI	CTYRAG	2 cut(s)	23, 777
SphI	GCATGC	1 cut(s)	986
Sse9I	AATT	7 cut(s)	17, 60, 81, 122, 708, 858, 940
SseBI	AGGCCT	1 cut(s)	853
SsiI	CCGC	1 cut(s)	734
SspMI	CTAG	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	853
StyD4I	CCNGG	4 cut(s)	418, 490, 752, 841
TaaI	ACNGT	3 cut(s)	389, 499, 993
TaqI	TCGA	2 cut(s)	541, 1077
TasI	AATT	7 cut(s)	17, 60, 81, 122, 708, 858, 940
TfiI	GAWTC	7 cut(s)	4, 107, 172, 543, 617, 737, 933
Tru1I	TTAA	4 cut(s)	24, 80, 153, 201
Tru9I	TTAA	4 cut(s)	24, 80, 153, 201
TscAI	CASTG	5 cut(s)	320, 468, 771, 884, 1146
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	766
TspDTI	ATGAA	6 cut(s)	366, 702, 900, 1024, 1113, 1137
TspRI	CASTG	5 cut(s)	320, 468, 771, 884, 1146
Van91I	CCANNNNNTGG	1 cut(s)	918
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	549
XapI	RAATTY	5 cut(s)	17, 60, 122, 708, 940
XceI	RCATGY	1 cut(s)	986
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.