Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007137

Physical Location & Seq

Genomic Coordinates Reverse (-)

36689712 .. 36692277

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1163300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAGGCGTATCTGTTTCCCTCGTTTTGTTTGTTCAAAATTCAAAAACGACCCAACAACTCCAATTCCTCTCTCTCTCTCTCTCTCTACTGAATCAATAAATCACCTAAAAAGGAAAACCAAGAACAAGCTAGAGTTTTGGATTTCCCCTTTGTTTTTACTTTTTTTGTTTGTTCTGAAATCGATGTTATGCTCGCTGTTGAAGCGTGGATTGGGGAATCTGTGCAGATCGGCGTTGAGGTTTCTTGACAGGTCGATTTCGCGAGCTATGGGCTGCTTCTTCGGTTGCTTTCGGGACAAAGATGATCGCCACCTCCGCTCTCGCCCTCACCTCGTCTCTCAGTCCTCTCGTAACCCCCAGACGGAAGTCGTGTTATCCCAAAACCGTTTGTCTGCTCTATTTTCAGCTGAAGAGCAAGAAGGTTCTCCAAGCAAAGATAGGGAAAGTCCGCGTTATGGGTCTCCACAAATTGACAAGGAGCTCAGGAATGAGGCCAAGTTTCTTAAAGCTTGTGGTACCATAGCGGAAACCCCAGCTGAAATTCGTAAAGTGTCTTCAAGGTTAAATGGCTCACCCCATCATGATAGAGATTCAGAGCCTCCAAAATTCAACTCATGGCTCCCAAACACATCCTTTAGAAATCTTCAGCAAGAGTTGGATCAACCAGATCATCCCCTTACGCCTATGAAGTACAATGAAGAGTGGGGAATGGGTTCAGGTCCTTCTGAGCATACGCCTAGCAGTTGTGAATTCAACCAACAGAATACTGGTAGGATCGCTATCAGCTCTTCTGGAGGCAGCGGAATAGGTACTGATTCCACAGTGAAGAGTCATACTAACCGGACTGAGAATATTACAACTCCAGATGTCCAGTGCAGGAGCAAGGCTGTTCGCTTTGAATGCGATAATAATACAAATTCCTCCAGAGGTTCTTCATCCGAAAATTATAACCGGAGTTCAAAAGTATGTGAAACTCCAGGAAAACAGAGCATATCAAAGCCTTCGGTTTATCCAACCCCACTAACTCTTTCTGAGGAGATGCAGACACCAGGAACTGTTTTCCCTGCAAATCTCGAAAACTTTCCAAATGGAAGGGCAAGAATCAGGTCCCAGTATGTGTATTCAGTGCAAAACCCTGTAGACGGCATCTCTCAGTGGAATGTACTGAAAGACGAAGATCCTAAGTCACTTGGACATTCTGGTGAGCCAAGAAGAATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0006355 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007142 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043934 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0060255 GO:0061983 GO:0065007 GO:0071840 GO:0080090 GO:0140013 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

45.75

Weight (kDa)

9.29

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06660 AT2G30820 AT2G30820
fragaria_vesca	FvH4_6g38770 FvH4_6g38770 FvH4_6g38770
malus_domestica	MD00G1163200.v1.1 MD00G1163300.v1.1 MD09G1146900.v1.1 MD17G1133500.v1.1
prunus_persica	Prupe.3G178400_v2.0.a1 Prupe.3G178400_v2.0.a1
pyrus_communis	pycom09g06740 pycom17g12800
rosa_chinensis	RchiOBHm_Chr2g0152321
rosa_laevigata	RLG00000020628
rosa_multiflora	Rmu_sc0004002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095800
rosa_rugosa	Rorug02G0432300 Rorug02G0432400
rosa_samantha	Rh2AG493900 Rh2BG506200 Rh2CG480200 Rh2DG517300
rosa_wichuraiana	Rw2G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
Acc65I	GGTACC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	515
AccBSI	CCGCTC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	1140
AccII	CGCG	2 cut(s)	262, 451
AciI	CCGC	4 cut(s)	316, 449, 524, 801
AclWI	GGATC	3 cut(s)	666, 782, 1172
AcsI	RAATTY	5 cut(s)	38, 540, 605, 749, 916
AcuI	CTGAAG	2 cut(s)	429, 629
AfaI	GTAC	4 cut(s)	517, 692, 811, 1164
AfiI	CCNNNNNNNGG	3 cut(s)	361, 455, 1142
AgsI	TTSAA	8 cut(s)	36, 43, 202, 558, 610, 754, 899, 960
AjnI	CCWGG	2 cut(s)	976, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	7 cut(s)	130, 266, 407, 481, 509, 536, 786
AluI	AGCT	7 cut(s)	130, 266, 407, 481, 509, 536, 786
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	340, 465
AlwI	GGATC	3 cut(s)	666, 782, 1172
AlwNI	CAGNNNCTG	1 cut(s)	1055
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	273, 798
ApoI	RAATTY	5 cut(s)	38, 540, 605, 749, 916
Asp700I	GAANNNNTTC	2 cut(s)	712, 1080
Asp718I	GGTACC	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	719, 1107
AsuHPI	GGTGA	4 cut(s)	95, 320, 564, 1214
AvaII	GGWCC	2 cut(s)	719, 1107
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	483
BarI	GAAGNNNNNNTAC	2 cut(s)	538, 570
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	260, 810
BccI	CCATC	1 cut(s)	585
BceAI	ACGGC	1 cut(s)	1159
BciT130I	CCWGG	2 cut(s)	978, 1050
BcoDI	GTCTC	2 cut(s)	340, 465
BfaI	CTAG	2 cut(s)	131, 738
BfmI	CTRYAG	1 cut(s)	1137
BisI	GCNGC	2 cut(s)	274, 799
BlsI	GCNGC	2 cut(s)	275, 800
Bme1390I	CCNGG	2 cut(s)	978, 1050
Bme18I	GGWCC	2 cut(s)	719, 1107
BmgT120I	GGNCC	2 cut(s)	719, 1107
BmiI	GGNNCC	3 cut(s)	517, 620, 1109
BmrFI	CCNGG	2 cut(s)	978, 1050
BmrI	ACTGGG	1 cut(s)	1105
BmsI	GCATC	2 cut(s)	1029, 1155
BmuI	ACTGGG	1 cut(s)	1105
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	4 cut(s)	813, 846, 907, 960
Bpu10I	CCTNAGC	1 cut(s)	482
Bsa29I	ATCGAT	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	779
BsaI	GGTCTC	1 cut(s)	465
BsaWI	WCCGGW	2 cut(s)	840, 951
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 455, 1142
Bse1I	ACTGG	3 cut(s)	772, 871, 1111
Bse8I	GATNNNNATC	1 cut(s)	779
BseBI	CCWGG	2 cut(s)	978, 1050
BseCI	ATCGAT	1 cut(s)	182
BseGI	GGATG	3 cut(s)	629, 670, 935
BseJI	GATNNNNATC	1 cut(s)	779
BseLI	CCNNNNNNNGG	3 cut(s)	361, 455, 1142
BseMII	CTCAG	6 cut(s)	353, 496, 717, 837, 1023, 1166
BseNI	ACTGG	3 cut(s)	772, 871, 1111
BseRI	GAGGAG	1 cut(s)	1049
BseXI	GCAGC	2 cut(s)	260, 810
BseYI	CCCAGC	1 cut(s)	532
BsgI	GTGCAG	2 cut(s)	244, 895
Bsh1236I	CGCG	2 cut(s)	262, 451
BshFI	GGCC	1 cut(s)	494
BshNI	GGYRCC	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	841, 952
BslFI	GGGAC	2 cut(s)	308, 1093
BslI	CCNNNNNNNGG	3 cut(s)	361, 455, 1142
BsmAI	GTCTC	2 cut(s)	340, 465
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	308, 1093
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	6 cut(s)	227, 304, 658, 667, 774, 1177
Bsp68I	TCGCGA	1 cut(s)	262
BspACI	CCGC	4 cut(s)	316, 449, 524, 801
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	6 cut(s)	352, 495, 718, 838, 1024, 1165
BspDI	ATCGAT	1 cut(s)	182
BspFNI	CGCG	2 cut(s)	262, 451
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	3 cut(s)	517, 620, 1109
BspPI	GGATC	3 cut(s)	666, 782, 1172
BspQI	GCTCTTC	2 cut(s)	405, 793
BspT107I	GGYRCC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	465
BsrBI	CCGCTC	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	772, 871, 1111
BssMI	GATC	6 cut(s)	227, 304, 658, 667, 774, 1177
Bst2UI	CCWGG	2 cut(s)	978, 1050
Bst4CI	ACNGT	3 cut(s)	386, 823, 1057
Bst6I	CTCTTC	4 cut(s)	405, 693, 793, 821
BstC8I	GCNNGC	2 cut(s)	194, 264
BstDEI	CTNAG	7 cut(s)	339, 482, 726, 846, 1032, 1152, 1182
BstF5I	GGATG	3 cut(s)	629, 670, 935
BstFNI	CGCG	2 cut(s)	262, 451
BstKTI	GATC	6 cut(s)	230, 307, 661, 670, 777, 1180
BstMAI	GTCTC	2 cut(s)	340, 465
BstMBI	GATC	6 cut(s)	227, 304, 658, 667, 774, 1177
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 315, 900
BstNI	CCWGG	2 cut(s)	978, 1050
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	976, 1048
BstSFI	CTRYAG	1 cut(s)	1137
BstUI	CGCG	2 cut(s)	262, 451
BstV1I	GCAGC	2 cut(s)	260, 810
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	1177
BstYI	RGATCY	1 cut(s)	1177
Bsu15I	ATCGAT	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	494
BsuTUI	ATCGAT	1 cut(s)	182
BtsCI	GGATG	3 cut(s)	629, 670, 935
BtsIMutI	CAGTG	4 cut(s)	828, 878, 1131, 1160
BtuMI	TCGCGA	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	194, 264
CaiI	CAGNNNCTG	1 cut(s)	1055
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	719, 1107
ClaI	ATCGAT	1 cut(s)	182
Csp6I	GTAC	4 cut(s)	516, 691, 810, 1163
CviAII	CATG	2 cut(s)	581, 615
CviQI	GTAC	4 cut(s)	516, 691, 810, 1163
DdeI	CTNAG	7 cut(s)	339, 482, 726, 846, 1032, 1152, 1182
DpnI	GATC	6 cut(s)	229, 306, 660, 669, 776, 1179
DpnII	GATC	6 cut(s)	227, 304, 658, 667, 774, 1177
Eam1104I	CTCTTC	4 cut(s)	405, 693, 793, 821
EarI	CTCTTC	4 cut(s)	405, 693, 793, 821
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	719, 1107
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	429, 629
EcoICRI	GAGCTC	1 cut(s)	481
EcoO109I	RGGNCCY	2 cut(s)	719, 1107
EcoRI	GAATTC	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	976, 1048
EcoT38I	GRGCYC	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	2 cut(s)	584, 618
FalI	AAGNNNNNCTT	1 cut(s)	1204
FaqI	GGGAC	2 cut(s)	308, 1093
FatI	CATG	2 cut(s)	580, 614
FblI	GTMKAC	1 cut(s)	1140
Fnu4HI	GCNGC	2 cut(s)	274, 799
FokI	GGATG	3 cut(s)	616, 657, 922
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	2 cut(s)	274, 799
FspBI	CTAG	2 cut(s)	131, 738
GluI	GCNGC	2 cut(s)	274, 799
GsaI	CCCAGC	1 cut(s)	536
GsuI	CTGGAG	4 cut(s)	813, 846, 907, 960
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	2 cut(s)	841, 952
Hin1II	CATG	2 cut(s)	584, 618
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	7 cut(s)	92, 217, 590, 815, 829, 1101, 1215
HpaII	CCGG	2 cut(s)	841, 952
HphI	GGTGA	4 cut(s)	95, 320, 564, 1214
Hpy166II	GTNNAC	1 cut(s)	1141
Hpy188I	TCNGA	5 cut(s)	177, 595, 727, 940, 1033
Hpy188III	TCNNGA	9 cut(s)	245, 261, 293, 484, 581, 792, 863, 924, 1073
Hpy8I	GTNNAC	1 cut(s)	1141
HpyAV	CCTTC	4 cut(s)	413, 732, 1011, 1086
HpyCH4III	ACNGT	3 cut(s)	386, 823, 1057
HpyCH4V	TGCA	5 cut(s)	225, 876, 1042, 1067, 1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 315, 900
HpyF3I	CTNAG	7 cut(s)	339, 482, 726, 846, 1032, 1152, 1182
Hsp92II	CATG	2 cut(s)	584, 618
KpnI	GGTACC	1 cut(s)	519
Kzo9I	GATC	6 cut(s)	227, 304, 658, 667, 774, 1177
LguI	GCTCTTC	2 cut(s)	405, 793
LmnI	GCTCC	3 cut(s)	478, 624, 879
Lsp1109I	GCAGC	2 cut(s)	260, 810
LweI	GCATC	2 cut(s)	1029, 1155
MaeI	CTAG	2 cut(s)	131, 738
MaeIII	GTNAC	2 cut(s)	350, 1185
MalI	GATC	6 cut(s)	229, 306, 660, 669, 776, 1179
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	6 cut(s)	227, 304, 658, 667, 774, 1177
MflI	RGATCY	1 cut(s)	1177
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	8 cut(s)	38, 63, 468, 540, 605, 749, 916, 943
MlyI	GAGTC	1 cut(s)	838
MmeI	TCCRAC	2 cut(s)	636, 1037
MroXI	GAANNNNTTC	2 cut(s)	712, 1080
MseI	TTAA	3 cut(s)	504, 563, 1222
MslI	CAYNNNNRTG	1 cut(s)	1200
MspA1I	CMGCKG	3 cut(s)	407, 536, 801
MspI	CCGG	2 cut(s)	841, 952
MspR9I	CCNGG	2 cut(s)	978, 1050
Mva1269I	GAATGC	1 cut(s)	905
MvaI	CCWGG	2 cut(s)	978, 1050
MvnI	CGCG	2 cut(s)	262, 451
MwoI	GCNNNNNNNGC	3 cut(s)	202, 315, 900
NdeII	GATC	6 cut(s)	227, 304, 658, 667, 774, 1177
NlaIII	CATG	2 cut(s)	584, 618
NlaIV	GGNNCC	3 cut(s)	517, 620, 1109
NmuCI	GTSAC	1 cut(s)	1185
NruI	TCGCGA	1 cut(s)	262
PagI	TCATGA	1 cut(s)	580
PciSI	GCTCTTC	2 cut(s)	405, 793
PctI	GAATGC	1 cut(s)	905
PdmI	GAANNNNTTC	2 cut(s)	712, 1080
PfeI	GAWTC	6 cut(s)	92, 217, 590, 815, 1101, 1215
PfoI	TCCNGGA	1 cut(s)	976
PkrI	GCNGC	2 cut(s)	275, 800
PleI	GAGTC	1 cut(s)	837
PpsI	GAGTC	1 cut(s)	837
PpuMI	RGGWCCY	2 cut(s)	719, 1107
PshAI	GACNNNNGTC	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	948
Psp124BI	GAGCTC	1 cut(s)	483
Psp5II	RGGWCCY	2 cut(s)	719, 1107
Psp6I	CCWGG	2 cut(s)	976, 1048
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	2 cut(s)	976, 1048
PspN4I	GGNNCC	3 cut(s)	517, 620, 1109
PspPI	GGNCC	2 cut(s)	719, 1107
PspPPI	RGGWCCY	2 cut(s)	719, 1107
PstNI	CAGNNNCTG	1 cut(s)	1055
PsuI	RGATCY	1 cut(s)	1177
PvuII	CAGCTG	2 cut(s)	407, 536
RruI	TCGCGA	1 cut(s)	262
RsaI	GTAC	4 cut(s)	517, 692, 811, 1164
RsaNI	GTAC	4 cut(s)	516, 691, 810, 1163
RseI	CAYNNNNRTG	1 cut(s)	1200
SacI	GAGCTC	1 cut(s)	483
SapI	GCTCTTC	2 cut(s)	405, 793
SaqAI	TTAA	3 cut(s)	504, 563, 1222
SatI	GCNGC	2 cut(s)	274, 799
Sau3AI	GATC	6 cut(s)	227, 304, 658, 667, 774, 1177
Sau96I	GGNCC	2 cut(s)	719, 1107
SchI	GAGTC	1 cut(s)	838
ScrFI	CCNGG	2 cut(s)	978, 1050
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	1029, 1155
SfcI	CTRYAG	1 cut(s)	1137
SinI	GGWCC	2 cut(s)	719, 1107
SmiMI	CAYNNNNRTG	1 cut(s)	1200
Sse9I	AATT	8 cut(s)	38, 63, 468, 540, 605, 749, 916, 943
SsiI	CCGC	4 cut(s)	316, 449, 524, 801
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	2 cut(s)	131, 738
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	976, 1048
TaaI	ACNGT	3 cut(s)	386, 823, 1057
TaqI	TCGA	3 cut(s)	182, 254, 1074
TasI	AATT	8 cut(s)	38, 63, 468, 540, 605, 749, 916, 943
TatI	WGTACW	2 cut(s)	690, 1162
TfiI	GAWTC	6 cut(s)	92, 217, 590, 815, 1101, 1215
Tru1I	TTAA	3 cut(s)	504, 563, 1222
Tru9I	TTAA	3 cut(s)	504, 563, 1222
TscAI	CASTG	4 cut(s)	828, 878, 1131, 1160
TseFI	GTSAC	1 cut(s)	1185
TseI	GCWGC	2 cut(s)	273, 798
Tsp45I	GTSAC	1 cut(s)	1185
TspDTI	ATGAA	3 cut(s)	701, 711, 924
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	4 cut(s)	828, 878, 1131, 1160
VpaK11BI	GGWCC	2 cut(s)	719, 1107
XapI	RAATTY	5 cut(s)	38, 540, 605, 749, 916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	1140
XmnI	GAANNNNTTC	2 cut(s)	712, 1080
XspI	CTAG	2 cut(s)	131, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.