Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007137

Physical Location & Seq

Genomic Coordinates Reverse (-)

64503510 .. 64507654

Gene Structure 4145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG480200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGATTCTGCAGGCCAAATTTCTTAAGGCTTGTGGTACTATAGTTGAGACCCCAGTTGAAATTCGGAAAGCTTCAAAGTTAATTGGCTCACCCCATCATGATAGAGATTCAGAGCCCTCAAAATTCAACTCATGGCTTCCCAACACATCCATTAAAAAGCTTCAGCAGGAGAATCAACCAGAGCAGCCTCCTACACCTGTTAAACTTTTTGAAGAGTGGGGAAAGGGGTCAGAGCATACACCTATCAGTTATGAGACAAACCAACAGGGTACTGGAAGAAGCTCTCTCAGCTCTACTGAAGGTAGTGGACTAGGTACTGATTCATCAGTAAAGATTCATTCTAATCGGGCTGAGAACACTGTAACTCTAACTTCACCTTTGCACTCAGCCACAGATGTCCAGTGCAGGGGCAAGTCTGTTCGCTTTGAATGTGATTTTGATACAGCATCCTCAAAAGGTTCTTCATCTGGTAACTGTAGCAGGAGTGCAAAAATAGCTGAAACTCCAGGAAAACAGGGCACATCAAAGTATTCAGATTATCCAACCCCCCTGACTCTTTCTGACGAGATGCAGACACCTGGAACAGTTTACCCATCAAGCCAGAGAACTTTTCCTAATGGAAAGTCTCGAATCAGGTCCCAGTATGTGTATTCAGTTCCAAACCCTGAGGGCATCTCTCGGTGGAATGTGCTGACAGAGGAAGATTCTAACTCACATGGGTTTTCAGGTGAGCCTAGTGAGTCTCTCAAACAATCCGGAAATGCAACCCCCATATCAGAAGAGGGGCAAAAAGAAATTTCATCTGGAAAAGACTTACAGGCGGAATCAAGTATGTCCTCCTGGCAGAAGCCAGTGAAATCTACTCAAGATGACAACAATCTGAAGTTGGGAGACGCTTCTGGCAGAAATCGTTATTTTGGCAGAACTCCTGGGGACAGGCCTATAATTGGGTTGGTTGCTACTCACTGGAATGAAGATGACGCTACTCGTATCTCCCCCAAGTGGTGGGACGGGAAGGGAATCCCAAATTCAACCAATAAATACAAAGAGGATCAGAAAGTGAGTTGGCATGCAACACCGTTTGAGGAGAGGTTGGAGAAGGCATTGTCTGAAGAAAGTTTCATTTCTCAGAGAAAAAACATAGGGGGAATGCCCATTGTGTTCGATGAGAACGAAGAAAGTGATACTGCTCTTTCTCAGTTGCAATCTTCATCCCAGCCAAAGTCAGTGGTTTCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0006355 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007142 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043934 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0060255 GO:0061983 GO:0065007 GO:0071840 GO:0080090 GO:0140013 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

413

Amino Acids

45.4

Weight (kDa)

5.99

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06660 AT2G30820 AT2G30820
fragaria_vesca	FvH4_6g38770 FvH4_6g38770 FvH4_6g38770
malus_domestica	MD00G1163200.v1.1 MD00G1163300.v1.1 MD09G1146900.v1.1 MD17G1133500.v1.1
prunus_persica	Prupe.3G178400_v2.0.a1 Prupe.3G178400_v2.0.a1
pyrus_communis	pycom09g06740 pycom17g12800
rosa_chinensis	RchiOBHm_Chr2g0152321
rosa_laevigata	RLG00000020628
rosa_multiflora	Rmu_sc0004002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095800
rosa_rugosa	Rorug02G0432300 Rorug02G0432400
rosa_samantha	Rh2AG493900 Rh2BG506200 Rh2CG480200 Rh2DG517300
rosa_wichuraiana	Rw2G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1005
AccIII	TCCGGA	1 cut(s)	755
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	1 cut(s)	1059
AcsI	RAATTY	5 cut(s)	17, 60, 122, 795, 1027
AcuI	CTGAAG	4 cut(s)	146, 318, 902, 1131
AfaI	GTAC	3 cut(s)	37, 271, 316
AfiI	CCNNNNNNNGG	4 cut(s)	406, 947, 1002, 1005
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	6 cut(s)	59, 75, 127, 212, 428, 1032
AjnI	CCWGG	4 cut(s)	505, 577, 839, 928
AluBI	AGCT	5 cut(s)	71, 160, 282, 291, 497
AluI	AGCT	5 cut(s)	71, 160, 282, 291, 497
Alw26I	GTCTC	5 cut(s)	41, 248, 630, 747, 885
AlwI	GGATC	1 cut(s)	1059
Aor13HI	TCCGGA	1 cut(s)	755
AoxI	GGCC	2 cut(s)	12, 938
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	5 cut(s)	17, 60, 122, 795, 1027
AspS9I	GGNCC	1 cut(s)	636
AsuHPI	GGTGA	3 cut(s)	81, 366, 740
AvaII	GGWCC	1 cut(s)	636
AxyI	CCTNAGG	1 cut(s)	666
BaeGI	GKGCMC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	102, 601
BciT130I	CCWGG	4 cut(s)	507, 579, 841, 930
BcoDI	GTCTC	5 cut(s)	41, 248, 630, 747, 885
BfaI	CTAG	2 cut(s)	311, 735
BfmI	CTRYAG	3 cut(s)	8, 39, 475
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	4 cut(s)	507, 579, 841, 930
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	636
BmiI	GGNNCC	1 cut(s)	638
BmrFI	CCNGG	4 cut(s)	507, 579, 841, 930
BmrI	ACTGGG	2 cut(s)	47, 634
BmsI	GCATC	3 cut(s)	455, 558, 681
BmuI	ACTGGG	2 cut(s)	47, 634
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	929
BsaWI	WCCGGW	1 cut(s)	755
Bsc4I	CCNNNNNNNGG	4 cut(s)	406, 947, 1002, 1005
Bse1I	ACTGG	6 cut(s)	53, 277, 400, 640, 851, 971
Bse21I	CCTNAGG	1 cut(s)	666
BseAI	TCCGGA	1 cut(s)	755
BseBI	CCWGG	4 cut(s)	507, 579, 841, 930
BseDI	CCNNGG	1 cut(s)	929
BseGI	GGATG	3 cut(s)	146, 446, 1211
BseLI	CCNNNNNNNGG	4 cut(s)	406, 947, 1002, 1005
BseMII	CTCAG	6 cut(s)	301, 342, 399, 657, 1142, 1211
BseNI	ACTGG	6 cut(s)	53, 277, 400, 640, 851, 971
BseRI	GAGGAG	1 cut(s)	1100
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	1215
BsgI	GTGCAG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	14, 940
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	3 cut(s)	622, 947, 1022
BslI	CCNNNNNNNGG	4 cut(s)	406, 947, 1002, 1005
BsmAI	GTCTC	5 cut(s)	41, 248, 630, 747, 885
BsmBI	CGTCTC	1 cut(s)	885
BsmFI	GGGAC	3 cut(s)	622, 947, 1022
BsmI	GAATGC	1 cut(s)	1155
BsnI	GGCC	2 cut(s)	14, 940
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	117, 521
Bsp13I	TCCGGA	1 cut(s)	755
Bsp143I	GATC	1 cut(s)	1051
BspACI	CCGC	1 cut(s)	821
BspANI	GGCC	2 cut(s)	14, 940
BspCNI	CTCAG	6 cut(s)	300, 343, 398, 658, 1141, 1210
BspEI	TCCGGA	1 cut(s)	755
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	638
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	1059
BspTI	CTTAAG	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	6 cut(s)	53, 277, 400, 640, 851, 971
BssECI	CCNNGG	1 cut(s)	929
BssMI	GATC	1 cut(s)	1051
Bst2UI	CCWGG	4 cut(s)	507, 579, 841, 930
Bst4CI	ACNGT	4 cut(s)	361, 476, 586, 1080
Bst6I	CTCTTC	2 cut(s)	207, 774
BstAFI	CTTAAG	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	12, 1071
BstDEI	CTNAG	6 cut(s)	287, 351, 385, 666, 1128, 1197
BstF5I	GGATG	3 cut(s)	146, 446, 1211
BstKTI	GATC	1 cut(s)	1054
BstMAI	GTCTC	5 cut(s)	41, 248, 630, 747, 885
BstMBI	GATC	1 cut(s)	1051
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 494
BstNI	CCWGG	4 cut(s)	507, 579, 841, 930
BstNSI	RCATGY	1 cut(s)	1073
BstSCI	CCNGG	4 cut(s)	505, 577, 839, 928
BstSFI	CTRYAG	3 cut(s)	8, 39, 475
BstSLI	GKGCMC	1 cut(s)	521
BstV1I	GCAGC	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	666
BsuRI	GGCC	2 cut(s)	14, 940
BtsCI	GGATG	3 cut(s)	146, 446, 1211
BtsIMutI	CAGTG	5 cut(s)	357, 407, 858, 964, 1233
Cac8I	GCNNGC	2 cut(s)	12, 1071
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	636
CseI	GACGC	2 cut(s)	902, 989
Csp6I	GTAC	3 cut(s)	36, 270, 315
CspCI	CAANNNNNGTGG	1 cut(s)	1209
CviAII	CATG	4 cut(s)	98, 132, 716, 1070
CviQI	GTAC	3 cut(s)	36, 270, 315
DdeI	CTNAG	6 cut(s)	287, 351, 385, 666, 1128, 1197
DpnI	GATC	1 cut(s)	1053
DpnII	GATC	1 cut(s)	1051
Eam1104I	CTCTTC	2 cut(s)	207, 774
EarI	CTCTTC	2 cut(s)	207, 774
EciI	GGCGGA	1 cut(s)	836
Eco147I	AGGCCT	1 cut(s)	940
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	636
Eco57I	CTGAAG	4 cut(s)	146, 318, 902, 1131
Eco81I	CCTNAGG	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	636
EcoRII	CCWGG	4 cut(s)	505, 577, 839, 928
EcoT38I	GRGCYC	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	885
FaeI	CATG	4 cut(s)	101, 135, 719, 1073
FaqI	GGGAC	3 cut(s)	622, 947, 1022
FatI	CATG	4 cut(s)	97, 131, 715, 1069
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	3 cut(s)	133, 433, 1198
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	2 cut(s)	311, 735
GluI	GCNGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	1219
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	14, 940
HapII	CCGG	1 cut(s)	756
HgaI	GACGC	2 cut(s)	902, 989
Hin1II	CATG	4 cut(s)	101, 135, 719, 1073
HindIII	AAGCTT	2 cut(s)	69, 158
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	3 cut(s)	81, 366, 740
Hpy166II	GTNNAC	2 cut(s)	308, 589
Hpy188III	TCNNGA	5 cut(s)	98, 627, 756, 804, 866
Hpy8I	GTNNAC	2 cut(s)	308, 589
HpyAV	CCTTC	3 cut(s)	293, 1009, 1093
HpyCH4III	ACNGT	4 cut(s)	361, 476, 586, 1080
HpyCH4V	TGCA	8 cut(s)	10, 382, 405, 488, 571, 764, 1073, 1204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 494
HpyF3I	CTNAG	6 cut(s)	287, 351, 385, 666, 1128, 1197
Hsp92II	CATG	4 cut(s)	101, 135, 719, 1073
Kpn2I	TCCGGA	1 cut(s)	755
Kzo9I	GATC	1 cut(s)	1051
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	3 cut(s)	455, 558, 681
MaeI	CTAG	2 cut(s)	311, 735
MaeIII	GTNAC	2 cut(s)	361, 470
MalI	GATC	1 cut(s)	1053
MboI	GATC	1 cut(s)	1051
MboII	GAAGA	9 cut(s)	224, 288, 453, 713, 791, 986, 1124, 1187, 1200
MhlI	GDGCHC	2 cut(s)	117, 521
MluCI	AATT	7 cut(s)	17, 60, 81, 122, 795, 945, 1027
MlyI	GAGTC	2 cut(s)	547, 749
MmeI	TCCRAC	2 cut(s)	566, 1074
MroI	TCCGGA	1 cut(s)	755
MseI	TTAA	4 cut(s)	24, 80, 153, 201
MslI	CAYNNNNRTG	1 cut(s)	969
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	4 cut(s)	507, 579, 841, 930
Mva1269I	GAATGC	1 cut(s)	1155
MvaI	CCWGG	4 cut(s)	507, 579, 841, 930
MwoI	GCNNNNNNNGC	2 cut(s)	288, 494
NdeII	GATC	1 cut(s)	1051
NlaIII	CATG	4 cut(s)	101, 135, 719, 1073
NlaIV	GGNNCC	1 cut(s)	638
NspI	RCATGY	1 cut(s)	1073
PaeI	GCATGC	1 cut(s)	1073
PagI	TCATGA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	940
PcsI	WCGNNNNNNNCGW	1 cut(s)	1170
PctI	GAATGC	1 cut(s)	1155
PfeI	GAWTC	9 cut(s)	4, 107, 172, 320, 334, 630, 704, 824, 1020
PflMI	CCANNNNNTGG	1 cut(s)	1005
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	2 cut(s)	547, 748
PpsI	GAGTC	2 cut(s)	547, 748
PpuMI	RGGWCCY	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	636
Psp6I	CCWGG	4 cut(s)	505, 577, 839, 928
PspFI	CCCAGC	1 cut(s)	1215
PspGI	CCWGG	4 cut(s)	505, 577, 839, 928
PspN4I	GGNNCC	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	636
PspPPI	RGGWCCY	1 cut(s)	636
PstI	CTGCAG	1 cut(s)	12
RsaI	GTAC	3 cut(s)	37, 271, 316
RsaNI	GTAC	3 cut(s)	36, 270, 315
RseI	CAYNNNNRTG	1 cut(s)	969
SaqAI	TTAA	4 cut(s)	24, 80, 153, 201
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	1051
Sau96I	GGNCC	1 cut(s)	636
SchI	GAGTC	2 cut(s)	547, 749
ScrFI	CCNGG	4 cut(s)	507, 579, 841, 930
SduI	GDGCHC	2 cut(s)	117, 521
SfaNI	GCATC	3 cut(s)	455, 558, 681
SfcI	CTRYAG	3 cut(s)	8, 39, 475
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	969
SmlI	CTYRAG	2 cut(s)	23, 864
SmoI	CTYRAG	2 cut(s)	23, 864
SphI	GCATGC	1 cut(s)	1073
Sse9I	AATT	7 cut(s)	17, 60, 81, 122, 795, 945, 1027
SseBI	AGGCCT	1 cut(s)	940
SsiI	CCGC	1 cut(s)	821
SspMI	CTAG	2 cut(s)	311, 735
StuI	AGGCCT	1 cut(s)	940
StyD4I	CCNGG	4 cut(s)	505, 577, 839, 928
TaaI	ACNGT	4 cut(s)	361, 476, 586, 1080
TaqI	TCGA	2 cut(s)	628, 1164
TasI	AATT	7 cut(s)	17, 60, 81, 122, 795, 945, 1027
TfiI	GAWTC	9 cut(s)	4, 107, 172, 320, 334, 630, 704, 824, 1020
Tru1I	TTAA	4 cut(s)	24, 80, 153, 201
Tru9I	TTAA	4 cut(s)	24, 80, 153, 201
TscAI	CASTG	5 cut(s)	364, 407, 858, 971, 1233
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	8 cut(s)	312, 326, 453, 789, 987, 1111, 1200, 1224
TspRI	CASTG	5 cut(s)	364, 407, 858, 971, 1233
Van91I	CCANNNNNTGG	1 cut(s)	1005
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	636
XapI	RAATTY	5 cut(s)	17, 60, 122, 795, 1027
XceI	RCATGY	1 cut(s)	1073
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	2 cut(s)	311, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.