Rw2G040620

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
66232422 .. 66236195
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040620.1

Sequence Viewer

Length: 1509 bp
ATGTTATGCTTCAATCGTGAATTAGGGTTTGTTTGCAGATCGGTGTTGAGGTTTCTTGACAGATCGGTTGCCGGAGCTATGGGTTGCTTCTTCGGTTGCTTCAGAGACAGGGACGATCGCCATCTCCGCTCTCGGCCTCACCTCGTTTCTCAGCCCTCGCGCTCGGGAGCTGTGGTGTCTCAGAATCGTTTGTCATCTCTATTTTTAGCTGAAGAGAGAGGAGATTCTCCAGCCAGAGATCGGGAAAGTCCACAAATTGACAAGGAGCTCAAGAACGAGGCCAAATTTCTTAAGGCTTGTGGTACTATAGTTGAGACCCCAGTTGAAATTCGGAAAGCTTCAAAGTTAATTGGCTCACCCCATCATGATAGAGATTCAGAGCCCTCAAAATTCAACTCATGGCTTCCCAACACATCCATTAAAAAGCTTCAGCAGGAGAATCAACCAGAGCAGCCTCCTACACCTGTTAAACTTTTTGAAGAGTGGGGAAAGGGGTCAGAGCATACACCTATCAGTTATGAGACAAACCAACAGGGTACTGGAAGAAGCTCTCTCAGCTCTACTGAAGGTAGTGGACTAGGTACTGATTCATCAGTAAAGATTCATTCTAATCAGGCTGAGAACACTGTAACTCTAACTTCACCTTTGCACTCAGCCACAGATGTCCAGTGCAGGGGCAAGTCTGTTCGCTTTGAATGTGATTTTGATACAGCGTCCTCAAAAGGTTCTTCATCTGGTAACTGTAGCAGGAGTGCAAAAATAGCTGAAACTCCAGGAAAACAGGGCACATCAAAGTATTCAGATTATCCAACCCCACTGACTCTTTCTGACGAGATGCAGACACCTGGAACAGTTTACCCATCAAGCCAGAGAACTTTTCCTAATGGAAAGTCTCGAATCAGGTCCCAGTATGTGTATTCAGTTCCAAACCCTGAGGGCATCTCTCGGTGGAATGTGCTGACAGAGGAAGATTCTAACTCACATGGGTTTTCAGGTGAGCCTAGTGAGTCTCTCAAACAATCCGGAAATGCAACCCCCATATCAGAAGAGGGGCAAAAAGAAATTTCATCTGGAAAAGACTTACAGGAGGAATCAAGTATGTCCTCCTGGCAGAAGCCAGTGACATCTACTCAAGATGACAACAATCTGAAGTTGGGAGACGCTTCTGGCAGAAATCGTTATTTTGGCAGAACTCCTGGGGACAGGCCTATAATTGGGTTGGTTGCTACTCACTGGAATGAAGATGACGCTACTCGTATCTCCCCCAAGTGGTGGGACGGGAAGGGAATCCCAAATTCAACCAATAAATACAAAGAGGATCAGAAAGTGAGTTGGCATGCGACACCGTTTGAGGAGAGGTTGGAGAAGGCATTGTCTGAAGAAAGTTTCATTTCTCAGAGAAAAAACATAGGGGGAATGCCCATTGTGTTCGATGAGAACGAAGAAAGTGATACTGCTCTTTCTCAGTTGCAATCTTCATCCCAGCCAAAGTCAGTGGTTTCATTCTGA

Protein Analysis

502

Amino Acids

55.53

Weight (kDa)

6.14

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1272
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 1022
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 1326
AcsI RAATTY 5 cut(s) 284, 327, 389, 1062, 1294
AcuI CTGAAG 6 cut(s) 85, 231, 413, 585, 1169, 1398
AfaI GTAC 3 cut(s) 304, 538, 583
AfiI CCNNNNNNNGG 5 cut(s) 240, 673, 1214, 1269, 1272
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 7 cut(s) 13, 326, 342, 394, 479, 695, 1299
AjnI CCWGG 4 cut(s) 772, 844, 1106, 1195
AluBI AGCT 9 cut(s) 77, 170, 209, 268, 338, 427, 549, 558, 764
AluI AGCT 9 cut(s) 77, 170, 209, 268, 338, 427, 549, 558, 764
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 7 cut(s) 99, 183, 308, 515, 897, 1014, 1152
AlwI GGATC 1 cut(s) 1326
Ama87I CYCGRG 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 1022
AoxI GGCC 3 cut(s) 134, 279, 1205
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 5 cut(s) 284, 327, 389, 1062, 1294
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 903
AsuHPI GGTGA 4 cut(s) 131, 348, 633, 1007
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 903
AxyI CCTNAGG 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 788
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BanII GRGCYC 2 cut(s) 270, 384
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 463
BccI CCATC 3 cut(s) 129, 369, 868
BciT130I CCWGG 4 cut(s) 774, 846, 1108, 1197
BcoDI GTCTC 7 cut(s) 99, 183, 308, 515, 897, 1014, 1152
BfaI CTAG 2 cut(s) 578, 1002
BfmI CTRYAG 2 cut(s) 306, 742
BfrI CTTAAG 1 cut(s) 290
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 4 cut(s) 774, 846, 1108, 1197
Bme18I GGWCC 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 903
BmiI GGNNCC 1 cut(s) 905
BmrFI CCNGG 4 cut(s) 774, 846, 1108, 1197
BmrI ACTGGG 2 cut(s) 314, 901
BmsI GCATC 2 cut(s) 825, 948
BmuI ACTGGG 2 cut(s) 314, 901
BplI GAGNNNNNCTC 2 cut(s) 926, 958
BpmI CTGGAG 2 cut(s) 213, 756
BpuEI CTTGAG 2 cut(s) 254, 1116
BsaBI GATNNNNATC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 1196
BsaWI WCCGGW 1 cut(s) 1022
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 5 cut(s) 240, 673, 1214, 1269, 1272
Bse1I ACTGG 6 cut(s) 320, 544, 667, 907, 1118, 1238
Bse21I CCTNAGG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 1022
BseBI CCWGG 4 cut(s) 774, 846, 1108, 1197
BseDI CCNNGG 1 cut(s) 1196
BseGI GGATG 2 cut(s) 413, 1478
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 5 cut(s) 240, 673, 1214, 1269, 1272
BseMII CTCAG 8 cut(s) 164, 194, 568, 609, 666, 924, 1409, 1478
BseNI ACTGG 6 cut(s) 320, 544, 667, 907, 1118, 1238
BseRI GAGGAG 2 cut(s) 234, 1367
BseSI GKGCMC 1 cut(s) 788
BseXI GCAGC 1 cut(s) 463
BseYI CCCAGC 1 cut(s) 1482
BsgI GTGCAG 1 cut(s) 691
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 3 cut(s) 136, 281, 1207
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 2 cut(s) 72, 1023
BslFI GGGAC 4 cut(s) 125, 889, 1214, 1289
BslI CCNNNNNNNGG 5 cut(s) 240, 673, 1214, 1269, 1272
BsmAI GTCTC 7 cut(s) 99, 183, 308, 515, 897, 1014, 1152
BsmBI CGTCTC 1 cut(s) 1152
BsmFI GGGAC 4 cut(s) 125, 889, 1214, 1289
BsmI GAATGC 1 cut(s) 1422
BsnI GGCC 3 cut(s) 136, 281, 1207
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 3 cut(s) 270, 384, 788
Bsp13I TCCGGA 1 cut(s) 1022
Bsp143I GATC 5 cut(s) 38, 62, 115, 238, 1318
BspACI CCGC 1 cut(s) 127
BspANI GGCC 3 cut(s) 136, 281, 1207
BspCNI CTCAG 8 cut(s) 163, 193, 567, 610, 665, 925, 1408, 1477
BspEI TCCGGA 1 cut(s) 1022
BspFNI CGCG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 905
BspPI GGATC 1 cut(s) 1326
BspTI CTTAAG 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 129
BsrI ACTGG 6 cut(s) 320, 544, 667, 907, 1118, 1238
BssECI CCNNGG 1 cut(s) 1196
BssMI GATC 5 cut(s) 38, 62, 115, 238, 1318
Bst2UI CCWGG 4 cut(s) 774, 846, 1108, 1197
Bst4CI ACNGT 4 cut(s) 628, 743, 853, 1347
Bst6I CTCTTC 3 cut(s) 207, 474, 1041
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 1338
BstDEI CTNAG 8 cut(s) 150, 180, 554, 618, 652, 933, 1395, 1464
BstF5I GGATG 2 cut(s) 413, 1478
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 5 cut(s) 41, 65, 118, 241, 1321
BstMAI GTCTC 7 cut(s) 99, 183, 308, 515, 897, 1014, 1152
BstMBI GATC 5 cut(s) 38, 62, 115, 238, 1318
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 126, 555, 761
BstNI CCWGG 4 cut(s) 774, 846, 1108, 1197
BstNSI RCATGY 1 cut(s) 1340
BstSCI CCNGG 4 cut(s) 772, 844, 1106, 1195
BstSFI CTRYAG 2 cut(s) 306, 742
BstSLI GKGCMC 1 cut(s) 788
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 463
Bsu36I CCTNAGG 1 cut(s) 933
BsuRI GGCC 3 cut(s) 136, 281, 1207
BtsCI GGATG 2 cut(s) 413, 1478
BtsIMutI CAGTG 6 cut(s) 624, 674, 815, 1125, 1231, 1500
Cac8I GCNNGC 1 cut(s) 1338
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 903
CseI GACGC 3 cut(s) 702, 1169, 1256
Csp6I GTAC 3 cut(s) 303, 537, 582
CspCI CAANNNNNGTGG 1 cut(s) 1476
CviAII CATG 4 cut(s) 365, 399, 983, 1337
CviQI GTAC 3 cut(s) 303, 537, 582
DdeI CTNAG 8 cut(s) 150, 180, 554, 618, 652, 933, 1395, 1464
DpnI GATC 5 cut(s) 40, 64, 117, 240, 1320
DpnII GATC 5 cut(s) 38, 62, 115, 238, 1318
Eam1104I CTCTTC 3 cut(s) 207, 474, 1041
EarI CTCTTC 3 cut(s) 207, 474, 1041
Ecl136II GAGCTC 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 1207
Eco24I GRGCYC 2 cut(s) 270, 384
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 903
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 6 cut(s) 85, 231, 413, 585, 1169, 1398
Eco81I CCTNAGG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 903
EcoRII CCWGG 4 cut(s) 772, 844, 1106, 1195
EcoT38I GRGCYC 2 cut(s) 270, 384
Esp3I CGTCTC 1 cut(s) 1152
FaeI CATG 4 cut(s) 368, 402, 986, 1340
FaqI GGGAC 4 cut(s) 125, 889, 1214, 1289
FatI CATG 4 cut(s) 364, 398, 982, 1336
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 2 cut(s) 400, 1465
FriOI GRGCYC 2 cut(s) 270, 384
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 2 cut(s) 578, 1002
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 452
GsaI CCCAGC 1 cut(s) 1486
GsuI CTGGAG 2 cut(s) 213, 756
HaeIII GGCC 3 cut(s) 136, 281, 1207
HapII CCGG 2 cut(s) 72, 1023
HgaI GACGC 3 cut(s) 702, 1169, 1256
HhaI GCGC 1 cut(s) 162
Hin1II CATG 4 cut(s) 368, 402, 986, 1340
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 2 cut(s) 336, 425
HpaII CCGG 2 cut(s) 72, 1023
HphI GGTGA 4 cut(s) 131, 348, 633, 1007
Hpy166II GTNNAC 3 cut(s) 251, 575, 856
Hpy8I GTNNAC 3 cut(s) 251, 575, 856
HpyAV CCTTC 3 cut(s) 560, 1276, 1360
HpyCH4III ACNGT 4 cut(s) 628, 743, 853, 1347
HpyCH4V TGCA 7 cut(s) 36, 649, 672, 755, 838, 1031, 1471
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 555, 761
HpyF3I CTNAG 8 cut(s) 150, 180, 554, 618, 652, 933, 1395, 1464
Hsp92II CATG 4 cut(s) 368, 402, 986, 1340
HspAI GCGC 1 cut(s) 160
Kpn2I TCCGGA 1 cut(s) 1022
Kzo9I GATC 5 cut(s) 38, 62, 115, 238, 1318
LmnI GCTCC 3 cut(s) 74, 167, 265
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 2 cut(s) 825, 948
MaeI CTAG 2 cut(s) 578, 1002
MaeIII GTNAC 3 cut(s) 628, 737, 1120
MalI GATC 5 cut(s) 40, 64, 117, 240, 1320
MbiI CCGCTC 1 cut(s) 129
MboI GATC 5 cut(s) 38, 62, 115, 238, 1318
MhlI GDGCHC 3 cut(s) 270, 384, 788
MluCI AATT 9 cut(s) 20, 255, 284, 327, 348, 389, 1062, 1212, 1294
MlyI GAGTC 2 cut(s) 814, 1016
MmeI TCCRAC 2 cut(s) 833, 1341
MroI TCCGGA 1 cut(s) 1022
MseI TTAA 4 cut(s) 291, 347, 420, 468
MslI CAYNNNNRTG 1 cut(s) 1236
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 2 cut(s) 72, 1023
MspR9I CCNGG 4 cut(s) 774, 846, 1108, 1197
Mva1269I GAATGC 1 cut(s) 1422
MvaI CCWGG 4 cut(s) 774, 846, 1108, 1197
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 126, 555, 761
NdeII GATC 5 cut(s) 38, 62, 115, 238, 1318
NlaIII CATG 4 cut(s) 368, 402, 986, 1340
NlaIV GGNNCC 1 cut(s) 905
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 1120
NspI RCATGY 1 cut(s) 1340
PaeI GCATGC 1 cut(s) 1340
PagI TCATGA 1 cut(s) 364
PceI AGGCCT 1 cut(s) 1207
PcsI WCGNNNNNNNCGW 1 cut(s) 1437
PctI GAATGC 1 cut(s) 1422
PflMI CCANNNNNTGG 1 cut(s) 1272
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 1 cut(s) 453
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 2 cut(s) 814, 1015
PpsI GAGTC 2 cut(s) 814, 1015
PpuMI RGGWCCY 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 903
Psp6I CCWGG 4 cut(s) 772, 844, 1106, 1195
PspFI CCCAGC 1 cut(s) 1482
PspGI CCWGG 4 cut(s) 772, 844, 1106, 1195
PspN4I GGNNCC 1 cut(s) 905
PspPI GGNCC 1 cut(s) 903
PspPPI RGGWCCY 1 cut(s) 903
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 3 cut(s) 304, 538, 583
RsaNI GTAC 3 cut(s) 303, 537, 582
RseI CAYNNNNRTG 1 cut(s) 1236
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 291, 347, 420, 468
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 5 cut(s) 38, 62, 115, 238, 1318
Sau96I GGNCC 1 cut(s) 903
SchI GAGTC 2 cut(s) 814, 1016
ScrFI CCNGG 4 cut(s) 774, 846, 1108, 1197
SduI GDGCHC 3 cut(s) 270, 384, 788
SfaNI GCATC 2 cut(s) 825, 948
SfcI CTRYAG 2 cut(s) 306, 742
SinI GGWCC 1 cut(s) 903
SmiMI CAYNNNNRTG 1 cut(s) 1236
SmlI CTYRAG 3 cut(s) 269, 290, 1131
SmoI CTYRAG 3 cut(s) 269, 290, 1131
SphI GCATGC 1 cut(s) 1340
Sse9I AATT 9 cut(s) 20, 255, 284, 327, 348, 389, 1062, 1212, 1294
SseBI AGGCCT 1 cut(s) 1207
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 578, 1002
SstI GAGCTC 1 cut(s) 270
StuI AGGCCT 1 cut(s) 1207
StyD4I CCNGG 4 cut(s) 772, 844, 1106, 1195
TaaI ACNGT 4 cut(s) 628, 743, 853, 1347
TaqI TCGA 2 cut(s) 895, 1431
TasI AATT 9 cut(s) 20, 255, 284, 327, 348, 389, 1062, 1212, 1294
Tru1I TTAA 4 cut(s) 291, 347, 420, 468
Tru9I TTAA 4 cut(s) 291, 347, 420, 468
TscAI CASTG 6 cut(s) 631, 674, 822, 1125, 1238, 1500
TseFI GTSAC 1 cut(s) 1120
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 1120
TspDTI ATGAA 8 cut(s) 579, 593, 720, 1056, 1254, 1378, 1467, 1491
TspRI CASTG 6 cut(s) 631, 674, 822, 1125, 1238, 1500
Van91I CCANNNNNTGG 1 cut(s) 1272
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 903
XapI RAATTY 5 cut(s) 284, 327, 389, 1062, 1294
XceI RCATGY 1 cut(s) 1340
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XspI CTAG 2 cut(s) 578, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.