Rmu_sc0004002.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004002.1
Physical Location & Seq
Forward (+)
12791 .. 16948
4158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004002.1_g000001.1.cds

Sequence Viewer

Length: 1656 bp
atgttatgcttcaatcgtgaattagggtttgtgtgcagatcggtgttgaggtttcttgacagatcggttgccggagctatgggttgcttcttcggttgcttcagagacagggacgatcgccatctccgctctcggcctcacctcgtttctcagccctcgcgctcgggagctgtggtgtctcagaatcgtttgtcatctctatttttagctgaagagagaggagattctccagccagagatcgggaaagtccacaaattgacaaggagctcaagaacgaggccaaatttcttaaggcttgtggtactatagttgagaccccagttgaaattcggaaagcttcaaagttaattggctcaccccatcatgatagagattcagagccctcaaaattcaactcatggcttcccaacacatccattaaaaagcttcagcaggagaatcaaccagagcagcctcctacacctgttaaactttttgaagagtggggaaaggggtcagagcatacacctatcagttatgagacaaaccaacagggtactggaagaagctctctcagctctactgaaggtagtggactaggtactgattcatcagtaaagattcattctaatcgggctgagaacactgtaactccaacttcacctttgcactcagccacagatgtccagtgcaggggcaagtctgttcgctttgaatgtgattttgatacagcatcctcaaaaggttcttcatctggtaactgtagcaggagtgcaaaaatagctgaaactccaggaaaacagggcacatcaaagtattcagagtatccaaccccactgactctttctgacgagatgcagacacctggaacagtttacccatcaagccagagaacttttcctaatggaaagtctcgaatcaggtcccagtatgtgtattcagttccaaaccctgagggcatctctcggtggaatgtgctgacagaggaagattctaactcacatgggttttcaggtgaacctagtgagtctctcaaacaatccggaaatgcaacccccatatcagaagaggggcaaaaagaaatttcatctggaaaagacttacaggaggaatcaagtatgtcctcctggcagaagccagtgacatctactcaagatgacaacaatctgaagttgggagacgcttctggcagaaatcgttattttggcagaactcctggggacaggcctataattgggttggttgctactcactggaatgaagatgacgctactcgcctaaagccagtgacatctactcaagatgacaacaatctgaagttgggagacgcttctggcagaaatcgttattttggcagaactcctggggacaggcctataattgggttggttgctactcactggaatgaagatgacgctactcgtatctcccccaagtggtgggacggaaagggaatcccaaattcaaccaataaatacaaagaggatcagaaagtgagttggcatgcgacaccgtttgaggagaggttggagaaggcattgtctgaagaaagtttcatttctcagagaaaaaacatagggggaatgcccattgtgttcgatgagaacgaagaaagtgatactgctctttctcagttgcaatcttcatcccagccaaagtcagtggtttcattctga

Protein Analysis

551

Amino Acids

60.98

Weight (kDa)

6.32

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1419
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 1022
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 1473
AcsI RAATTY 5 cut(s) 284, 327, 389, 1062, 1441
AcuI CTGAAG 7 cut(s) 85, 231, 413, 585, 1169, 1316, 1545
AfaI GTAC 3 cut(s) 304, 538, 583
AfiI CCNNNNNNNGG 6 cut(s) 240, 673, 1214, 1361, 1416, 1419
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 7 cut(s) 13, 326, 342, 394, 479, 695, 1446
AjnI CCWGG 5 cut(s) 772, 844, 1106, 1195, 1342
AluBI AGCT 9 cut(s) 77, 170, 209, 268, 338, 427, 549, 558, 764
AluI AGCT 9 cut(s) 77, 170, 209, 268, 338, 427, 549, 558, 764
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 8 cut(s) 99, 183, 308, 515, 897, 1014, 1152, 1299
AlwI GGATC 1 cut(s) 1473
Ama87I CYCGRG 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 1022
AoxI GGCC 4 cut(s) 134, 279, 1205, 1352
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 5 cut(s) 284, 327, 389, 1062, 1441
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 903
AsuHPI GGTGA 4 cut(s) 131, 348, 633, 1007
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 903
AxyI CCTNAGG 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 788
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BanII GRGCYC 2 cut(s) 270, 384
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 463
BccI CCATC 3 cut(s) 129, 369, 868
BciT130I CCWGG 5 cut(s) 774, 846, 1108, 1197, 1344
BciVI GTATCC 1 cut(s) 816
BcoDI GTCTC 8 cut(s) 99, 183, 308, 515, 897, 1014, 1152, 1299
BfaI CTAG 2 cut(s) 578, 1002
BfmI CTRYAG 2 cut(s) 306, 742
BfrI CTTAAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 816
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 5 cut(s) 774, 846, 1108, 1197, 1344
Bme18I GGWCC 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 903
BmiI GGNNCC 1 cut(s) 905
BmrFI CCNGG 5 cut(s) 774, 846, 1108, 1197, 1344
BmrI ACTGGG 2 cut(s) 314, 901
BmsI GCATC 3 cut(s) 722, 825, 948
BmuI ACTGGG 2 cut(s) 314, 901
BplI GAGNNNNNCTC 2 cut(s) 926, 958
BpmI CTGGAG 2 cut(s) 213, 756
BpuEI CTTGAG 3 cut(s) 254, 1116, 1263
BsaBI GATNNNNATC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 1196, 1343
BsaWI WCCGGW 1 cut(s) 1022
BsaXI ACNNNNNCTCC 4 cut(s) 159, 189, 616, 646
Bsc4I CCNNNNNNNGG 6 cut(s) 240, 673, 1214, 1361, 1416, 1419
Bse1I ACTGG 8 cut(s) 320, 544, 667, 907, 1118, 1238, 1265, 1385
Bse21I CCTNAGG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 1022
BseBI CCWGG 5 cut(s) 774, 846, 1108, 1197, 1344
BseDI CCNNGG 2 cut(s) 1196, 1343
BseGI GGATG 3 cut(s) 413, 713, 1625
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 6 cut(s) 240, 673, 1214, 1361, 1416, 1419
BseMII CTCAG 8 cut(s) 164, 194, 568, 609, 666, 924, 1556, 1625
BseNI ACTGG 8 cut(s) 320, 544, 667, 907, 1118, 1238, 1265, 1385
BseRI GAGGAG 2 cut(s) 234, 1514
BseSI GKGCMC 1 cut(s) 788
BseXI GCAGC 1 cut(s) 463
BseYI CCCAGC 1 cut(s) 1629
BsgI GTGCAG 2 cut(s) 55, 691
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 4 cut(s) 136, 281, 1207, 1354
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 2 cut(s) 72, 1023
BslFI GGGAC 5 cut(s) 125, 889, 1214, 1361, 1436
BslI CCNNNNNNNGG 6 cut(s) 240, 673, 1214, 1361, 1416, 1419
BsmAI GTCTC 8 cut(s) 99, 183, 308, 515, 897, 1014, 1152, 1299
BsmBI CGTCTC 2 cut(s) 1152, 1299
BsmFI GGGAC 5 cut(s) 125, 889, 1214, 1361, 1436
BsmI GAATGC 1 cut(s) 1569
BsnI GGCC 4 cut(s) 136, 281, 1207, 1354
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 3 cut(s) 270, 384, 788
Bsp13I TCCGGA 1 cut(s) 1022
Bsp143I GATC 5 cut(s) 38, 62, 115, 238, 1465
BspACI CCGC 1 cut(s) 127
BspANI GGCC 4 cut(s) 136, 281, 1207, 1354
BspCNI CTCAG 8 cut(s) 163, 193, 567, 610, 665, 925, 1555, 1624
BspEI TCCGGA 1 cut(s) 1022
BspFNI CGCG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 905
BspPI GGATC 1 cut(s) 1473
BspTI CTTAAG 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 129
BsrI ACTGG 8 cut(s) 320, 544, 667, 907, 1118, 1238, 1265, 1385
BssECI CCNNGG 2 cut(s) 1196, 1343
BssMI GATC 5 cut(s) 38, 62, 115, 238, 1465
Bst2UI CCWGG 5 cut(s) 774, 846, 1108, 1197, 1344
Bst4CI ACNGT 4 cut(s) 628, 743, 853, 1494
Bst6I CTCTTC 3 cut(s) 207, 474, 1041
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 1485
BstDEI CTNAG 8 cut(s) 150, 180, 554, 618, 652, 933, 1542, 1611
BstF5I GGATG 3 cut(s) 413, 713, 1625
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 5 cut(s) 41, 65, 118, 241, 1468
BstMAI GTCTC 8 cut(s) 99, 183, 308, 515, 897, 1014, 1152, 1299
BstMBI GATC 5 cut(s) 38, 62, 115, 238, 1465
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 126, 555, 761
BstNI CCWGG 5 cut(s) 774, 846, 1108, 1197, 1344
BstNSI RCATGY 1 cut(s) 1487
BstSCI CCNGG 5 cut(s) 772, 844, 1106, 1195, 1342
BstSFI CTRYAG 2 cut(s) 306, 742
BstSLI GKGCMC 1 cut(s) 788
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 463
Bsu36I CCTNAGG 1 cut(s) 933
BsuI GTATCC 1 cut(s) 816
BsuRI GGCC 4 cut(s) 136, 281, 1207, 1354
BtsCI GGATG 3 cut(s) 413, 713, 1625
BtsIMutI CAGTG 8 cut(s) 624, 674, 815, 1125, 1231, 1272, 1378, 1647
Cac8I GCNNGC 1 cut(s) 1485
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 903
CseI GACGC 4 cut(s) 1169, 1256, 1316, 1403
Csp6I GTAC 3 cut(s) 303, 537, 582
CspCI CAANNNNNGTGG 1 cut(s) 1623
CviAII CATG 4 cut(s) 365, 399, 983, 1484
CviQI GTAC 3 cut(s) 303, 537, 582
DdeI CTNAG 8 cut(s) 150, 180, 554, 618, 652, 933, 1542, 1611
DpnI GATC 5 cut(s) 40, 64, 117, 240, 1467
DpnII GATC 5 cut(s) 38, 62, 115, 238, 1465
Eam1104I CTCTTC 3 cut(s) 207, 474, 1041
EarI CTCTTC 3 cut(s) 207, 474, 1041
Ecl136II GAGCTC 1 cut(s) 268
Eco147I AGGCCT 2 cut(s) 1207, 1354
Eco24I GRGCYC 2 cut(s) 270, 384
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 903
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 7 cut(s) 85, 231, 413, 585, 1169, 1316, 1545
Eco81I CCTNAGG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 903
EcoRII CCWGG 5 cut(s) 772, 844, 1106, 1195, 1342
EcoT38I GRGCYC 2 cut(s) 270, 384
Esp3I CGTCTC 2 cut(s) 1152, 1299
FaeI CATG 4 cut(s) 368, 402, 986, 1487
FaqI GGGAC 5 cut(s) 125, 889, 1214, 1361, 1436
FatI CATG 4 cut(s) 364, 398, 982, 1483
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 3 cut(s) 400, 700, 1612
FriOI GRGCYC 2 cut(s) 270, 384
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 2 cut(s) 578, 1002
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 452
GsaI CCCAGC 1 cut(s) 1633
GsuI CTGGAG 2 cut(s) 213, 756
HaeIII GGCC 4 cut(s) 136, 281, 1207, 1354
HapII CCGG 2 cut(s) 72, 1023
HgaI GACGC 4 cut(s) 1169, 1256, 1316, 1403
HhaI GCGC 1 cut(s) 162
Hin1II CATG 4 cut(s) 368, 402, 986, 1487
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 2 cut(s) 336, 425
HpaII CCGG 2 cut(s) 72, 1023
HphI GGTGA 4 cut(s) 131, 348, 633, 1007
Hpy166II GTNNAC 4 cut(s) 251, 575, 856, 998
Hpy8I GTNNAC 4 cut(s) 251, 575, 856, 998
HpyAV CCTTC 2 cut(s) 560, 1507
HpyCH4III ACNGT 4 cut(s) 628, 743, 853, 1494
HpyCH4V TGCA 7 cut(s) 36, 649, 672, 755, 838, 1031, 1618
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 555, 761
HpyF3I CTNAG 8 cut(s) 150, 180, 554, 618, 652, 933, 1542, 1611
Hsp92II CATG 4 cut(s) 368, 402, 986, 1487
HspAI GCGC 1 cut(s) 160
Kpn2I TCCGGA 1 cut(s) 1022
Kzo9I GATC 5 cut(s) 38, 62, 115, 238, 1465
LmnI GCTCC 3 cut(s) 74, 167, 265
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 3 cut(s) 722, 825, 948
MaeI CTAG 2 cut(s) 578, 1002
MaeIII GTNAC 4 cut(s) 628, 737, 1120, 1267
MalI GATC 5 cut(s) 40, 64, 117, 240, 1467
MbiI CCGCTC 1 cut(s) 129
MboI GATC 5 cut(s) 38, 62, 115, 238, 1465
MhlI GDGCHC 3 cut(s) 270, 384, 788
MlyI GAGTC 2 cut(s) 814, 1016
MmeI TCCRAC 3 cut(s) 659, 833, 1488
MroI TCCGGA 1 cut(s) 1022
MseI TTAA 4 cut(s) 291, 347, 420, 468
MslI CAYNNNNRTG 2 cut(s) 1236, 1383
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 2 cut(s) 72, 1023
MspR9I CCNGG 5 cut(s) 774, 846, 1108, 1197, 1344
Mva1269I GAATGC 1 cut(s) 1569
MvaI CCWGG 5 cut(s) 774, 846, 1108, 1197, 1344
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 126, 555, 761
NdeII GATC 5 cut(s) 38, 62, 115, 238, 1465
NlaIII CATG 4 cut(s) 368, 402, 986, 1487
NlaIV GGNNCC 1 cut(s) 905
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 1120, 1267
NspI RCATGY 1 cut(s) 1487
PaeI GCATGC 1 cut(s) 1487
PagI TCATGA 1 cut(s) 364
PceI AGGCCT 2 cut(s) 1207, 1354
PcsI WCGNNNNNNNCGW 1 cut(s) 1584
PctI GAATGC 1 cut(s) 1569
PflMI CCANNNNNTGG 1 cut(s) 1419
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 1 cut(s) 453
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 2 cut(s) 814, 1015
PpsI GAGTC 2 cut(s) 814, 1015
PpuMI RGGWCCY 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 903
Psp6I CCWGG 5 cut(s) 772, 844, 1106, 1195, 1342
PspFI CCCAGC 1 cut(s) 1629
PspGI CCWGG 5 cut(s) 772, 844, 1106, 1195, 1342
PspN4I GGNNCC 1 cut(s) 905
PspPI GGNCC 1 cut(s) 903
PspPPI RGGWCCY 1 cut(s) 903
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 3 cut(s) 304, 538, 583
RsaNI GTAC 3 cut(s) 303, 537, 582
RseI CAYNNNNRTG 2 cut(s) 1236, 1383
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 291, 347, 420, 468
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 5 cut(s) 38, 62, 115, 238, 1465
Sau96I GGNCC 1 cut(s) 903
SchI GAGTC 2 cut(s) 814, 1016
ScrFI CCNGG 5 cut(s) 774, 846, 1108, 1197, 1344
SduI GDGCHC 3 cut(s) 270, 384, 788
SfaNI GCATC 3 cut(s) 722, 825, 948
SfcI CTRYAG 2 cut(s) 306, 742
SinI GGWCC 1 cut(s) 903
SmiMI CAYNNNNRTG 2 cut(s) 1236, 1383
SmlI CTYRAG 4 cut(s) 269, 290, 1131, 1278
SmoI CTYRAG 4 cut(s) 269, 290, 1131, 1278
SphI GCATGC 1 cut(s) 1487
SseBI AGGCCT 2 cut(s) 1207, 1354
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 578, 1002
SstI GAGCTC 1 cut(s) 270
StuI AGGCCT 2 cut(s) 1207, 1354
StyD4I CCNGG 5 cut(s) 772, 844, 1106, 1195, 1342
TaaI ACNGT 4 cut(s) 628, 743, 853, 1494
TaqI TCGA 2 cut(s) 895, 1578
Tru1I TTAA 4 cut(s) 291, 347, 420, 468
Tru9I TTAA 4 cut(s) 291, 347, 420, 468
TscAI CASTG 8 cut(s) 631, 674, 822, 1125, 1238, 1272, 1385, 1647
TseFI GTSAC 2 cut(s) 1120, 1267
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 2 cut(s) 1120, 1267
TspDTI ATGAA 9 cut(s) 579, 593, 720, 1056, 1254, 1401, 1525, 1614, 1638
TspGWI ACGGA 1 cut(s) 1440
TspRI CASTG 8 cut(s) 631, 674, 822, 1125, 1238, 1272, 1385, 1647
Van91I CCANNNNNTGG 1 cut(s) 1419
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 903
XapI RAATTY 5 cut(s) 284, 327, 389, 1062, 1441
XceI RCATGY 1 cut(s) 1487
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XspI CTAG 2 cut(s) 578, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.