Prupe.3G178400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
19488219 .. 19491801
3583 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G178400.1

Sequence Viewer

Length: 1506 bp
ATGTTATGCTCGCTGTTGGACCGTGAATTACGGCTTCTCTGCAGATCGGTGTTGAGGTTTCTTGACAGGTCGGTTTCGGGAGCTATGGGCTGCTTCTTTGGTTGCTTTAGGGTCAAGGACGATCGCCATCTCCGCTCTCGGCCTCACCTAGTCTCCCAATCCTCCCGTAACAATCAGACGGAAGTCGTGATATCTCAAAACCGTTTGTCGTCTCTATTTTCAGCCGAAGAGAGAGAAGGTTCTCCAAGCAAAGATAGGGAAAGTCCATGTTATGGGTCTCCACAAATTGACAAGGAGCTGAGGAATGAGGCCAAGTTTCTTAAAGCTTGTGGTACGTTAGTAGAGACCCCAGTTGAAATTCGGAAGGCGTCTTCAAAGTTAAATGGCTCACCCCACCATGATAGAGGTTCAGAGCCTCCAAAGTTCAACTCATGGCTTCCCAACACATCCATTAAACAACTTCAGCAGGAGGATCAACCAGATCAGCCCCTTACACCTATTAAACTTGGTGAAGAGTGGGGAAAGGGATCACGTCGTTCAGAGCATACACCTAGCAGTATGTCGAACCAACAGAATACTGGAGGAATCTCTATCAGCTCTACTGAAGGCAGTGGAATAGTTACTGATTCGACGGTCAAGACTGAGAGTATTTCAACTCCAGATGTCCAGTGCAGGAGCAAGGCTGTTCGTTTTGAATGCGATATCAATACAAATTCCTCCAGAGGTTCTTCATCCGAAAATTATAGCCGGAGTGCGAAGGTATCTGAAACTCCAGGAAAACAGAGCATATCGAAGCCTTCAGTTTATCCAACCCCACTAACTCTGTCTGATGAGATGCAGACACCAGGAACTGTTTTCCCAGCAAACCTGGGAAATTTTCCAAATGGAAAGGCTCGAATCAGGTCCCAGTATGTCTATGCCGTGCAAAACCCCGTAGAGGGCATCTCTCAGTGGAAGTTAATGAAAGACGAAGATACGAACTCACAGGGACTTTCAGGTGAGCTAAGAGAATCTCTTAACCAATCCGGAAATGCAACCCCTATATCAGAAGTGGGGGCAAAAGAAACTTCATCTGGACAAGAGTTCAATGTCGAATCAAGTTTGTCCTCCTGGCTGAAACCAGTAAATCGAGATGACAACAACCAAAACTTTGGTTATGTTCCTGGTCGAACTCGCCATTTTGGAAGAACTCCTGGGGACAGGCCTATCATTGGGCTTGTTGCTACTCACTGGAATGAAGATGAGCCTACTCGTATCTCGCCGAAGTGGTGGGACGGCAACGGGATCCCAAACTCAACTAATAAATACAAGGAGGATCAGAAGGTGAGTTGGCATGCGACACCATTTGAGGAGAGGTTAGAGAAGGCATTGTCTGAAGAGAGTTTCATCTCTCAGAGAAAACACATTGAGGGAAAGCCAATTGTATTTGATGAGACTGAGGAGAGTGATACTGCTCTTTCTCAATTGCAATCTTCATCCCAGCCAAAATCAGTGGTTTCATTCTGA

Protein Analysis

502

Amino Acids

55.68

Weight (kDa)

6.55

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 1025
AciI CCGC 1 cut(s) 133
AclWI GGATC 5 cut(s) 480, 535, 1279, 1292, 1323
AcsI RAATTY 3 cut(s) 357, 712, 874
AcuI CTGAAG 4 cut(s) 446, 624, 783, 1395
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 4 cut(s) 272, 937, 938, 1211
AgsI TTSAA 6 cut(s) 356, 375, 427, 654, 695, 1087
AjiI CACGTC 1 cut(s) 533
AjnI CCWGG 6 cut(s) 772, 844, 867, 1109, 1162, 1192
AluBI AGCT 5 cut(s) 83, 298, 326, 597, 1003
AluI AGCT 5 cut(s) 83, 298, 326, 597, 1003
Alw26I GTCTC 5 cut(s) 157, 216, 282, 338, 1427
AlwI GGATC 5 cut(s) 480, 535, 1279, 1292, 1323
AlwNI CAGNNNCTG 1 cut(s) 851
Aor13HI TCCGGA 1 cut(s) 1025
AoxI GGCC 3 cut(s) 140, 309, 1202
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 3 cut(s) 357, 712, 874
AspS9I GGNCC 2 cut(s) 19, 903
AsuHPI GGTGA 5 cut(s) 137, 381, 521, 1010, 1336
AvaII GGWCC 2 cut(s) 19, 903
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
BamHI GGATCC 1 cut(s) 1284
BbsI GAAGAC 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 135
BceAI ACGGC 3 cut(s) 47, 905, 1291
BciT130I CCWGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
BcoDI GTCTC 5 cut(s) 157, 216, 282, 338, 1427
BfaI CTAG 2 cut(s) 149, 552
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
Bme18I GGWCC 2 cut(s) 19, 903
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 19, 903
BmiI GGNNCC 2 cut(s) 905, 1286
BmrFI CCNGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
BmrI ACTGGG 2 cut(s) 344, 901
BmsI GCATC 2 cut(s) 825, 951
BmuI ACTGGG 2 cut(s) 344, 901
BoxI GACNNNNGTC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 929, 961
BpmI CTGGAG 4 cut(s) 600, 642, 703, 756
Bpu10I CCTNAGC 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 368
BsaI GGTCTC 2 cut(s) 282, 338
BsaJI CCNNGG 2 cut(s) 868, 1193
BsaWI WCCGGW 1 cut(s) 1025
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 937, 938, 1211
Bse1I ACTGG 6 cut(s) 350, 583, 667, 907, 1121, 1235
Bse8I GATNNNNATC 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 1025
BseBI CCWGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
BseDI CCNNGG 2 cut(s) 868, 1193
BseGI GGATG 3 cut(s) 446, 731, 1475
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 4 cut(s) 272, 937, 938, 1211
BseMII CTCAG 5 cut(s) 290, 633, 962, 1406, 1428
BseNI ACTGG 6 cut(s) 350, 583, 667, 907, 1121, 1235
BseRI GAGGAG 2 cut(s) 1364, 1454
BseXI GCAGC 1 cut(s) 77
BseYI CCCAGC 2 cut(s) 859, 1479
BsgI GTGCAG 1 cut(s) 691
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 142, 311, 1204
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 748, 1026
BslFI GGGAC 4 cut(s) 889, 1002, 1211, 1286
BslI CCNNNNNNNGG 4 cut(s) 272, 937, 938, 1211
BsmAI GTCTC 5 cut(s) 157, 216, 282, 338, 1427
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 4 cut(s) 889, 1002, 1211, 1286
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 3 cut(s) 142, 311, 1204
Bso31I GGTCTC 2 cut(s) 282, 338
Bsp13I TCCGGA 1 cut(s) 1025
Bsp143I GATC 7 cut(s) 44, 121, 472, 481, 527, 1284, 1315
BspACI CCGC 1 cut(s) 133
BspANI GGCC 3 cut(s) 142, 311, 1204
BspCNI CTCAG 5 cut(s) 291, 634, 961, 1405, 1429
BspEI TCCGGA 1 cut(s) 1025
BspLI GGNNCC 2 cut(s) 905, 1286
BspMAI CTGCAG 1 cut(s) 44
BspPI GGATC 5 cut(s) 480, 535, 1279, 1292, 1323
BspTNI GGTCTC 2 cut(s) 282, 338
BsrBI CCGCTC 1 cut(s) 135
BsrI ACTGG 6 cut(s) 350, 583, 667, 907, 1121, 1235
BssECI CCNNGG 2 cut(s) 868, 1193
BssMI GATC 7 cut(s) 44, 121, 472, 481, 527, 1284, 1315
BssNI GRCGYC 1 cut(s) 368
Bst2UI CCWGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
Bst4CI ACNGT 4 cut(s) 23, 203, 634, 853
Bst6I CTCTTC 3 cut(s) 222, 507, 1371
BstACI GRCGYC 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 11, 1335
BstDEI CTNAG 6 cut(s) 299, 642, 948, 1004, 1392, 1437
BstF5I GGATG 3 cut(s) 446, 731, 1475
BstKTI GATC 7 cut(s) 47, 124, 475, 484, 530, 1287, 1318
BstMAI GTCTC 5 cut(s) 157, 216, 282, 338, 1427
BstMBI GATC 7 cut(s) 44, 121, 472, 481, 527, 1284, 1315
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
BstNSI RCATGY 1 cut(s) 1337
BstPAI GACNNNNGTC 1 cut(s) 182
BstSCI CCNGG 6 cut(s) 772, 844, 867, 1109, 1162, 1192
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 1284
BstXI CCANNNNNNTGG 1 cut(s) 1151
BstYI RGATCY 1 cut(s) 1284
BsuRI GGCC 3 cut(s) 142, 311, 1204
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 3 cut(s) 446, 731, 1475
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 5 cut(s) 616, 674, 956, 1228, 1497
Cac8I GCNNGC 2 cut(s) 11, 1335
CaiI CAGNNNCTG 1 cut(s) 851
Cfr13I GGNCC 2 cut(s) 19, 903
CseI GACGC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 333
CspCI CAANNNNNGTGG 1 cut(s) 1473
CviAII CATG 4 cut(s) 267, 398, 432, 1334
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 6 cut(s) 299, 642, 948, 1004, 1392, 1437
DpnI GATC 7 cut(s) 46, 123, 474, 483, 529, 1286, 1317
DpnII GATC 7 cut(s) 44, 121, 472, 481, 527, 1284, 1315
Eam1104I CTCTTC 3 cut(s) 222, 507, 1371
EarI CTCTTC 3 cut(s) 222, 507, 1371
Eco147I AGGCCT 1 cut(s) 1204
Eco31I GGTCTC 2 cut(s) 282, 338
Eco32I GATATC 2 cut(s) 192, 703
Eco47I GGWCC 2 cut(s) 19, 903
Eco57I CTGAAG 4 cut(s) 446, 624, 783, 1395
EcoO109I RGGNCCY 1 cut(s) 903
EcoRII CCWGG 6 cut(s) 772, 844, 867, 1109, 1162, 1192
EcoRV GATATC 2 cut(s) 192, 703
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 4 cut(s) 270, 401, 435, 1337
FaqI GGGAC 4 cut(s) 889, 1002, 1211, 1286
FatI CATG 4 cut(s) 266, 397, 431, 1333
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 3 cut(s) 433, 718, 1462
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 2 cut(s) 149, 552
GluI GCNGC 1 cut(s) 91
GsaI CCCAGC 2 cut(s) 863, 1483
GsuI CTGGAG 4 cut(s) 600, 642, 703, 756
HaeIII GGCC 3 cut(s) 142, 311, 1204
HapII CCGG 2 cut(s) 748, 1026
HgaI GACGC 1 cut(s) 357
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 4 cut(s) 270, 401, 435, 1337
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 5 cut(s) 585, 626, 897, 1010, 1094
HpaII CCGG 2 cut(s) 748, 1026
HphI GGTGA 5 cut(s) 137, 381, 521, 1010, 1336
Hpy188III TCNNGA 9 cut(s) 62, 78, 187, 637, 659, 720, 1026, 1074, 1130
Hpy99I CGWCG 2 cut(s) 537, 634
HpyAV CCTTC 7 cut(s) 230, 358, 599, 751, 807, 1315, 1357
HpyCH4III ACNGT 4 cut(s) 23, 203, 634, 853
HpyCH4IV ACGT 2 cut(s) 335, 532
HpyCH4V TGCA 6 cut(s) 42, 672, 838, 925, 1034, 1468
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 6 cut(s) 299, 642, 948, 1004, 1392, 1437
HpySE526I ACGT 2 cut(s) 335, 532
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 4 cut(s) 270, 401, 435, 1337
Kpn2I TCCGGA 1 cut(s) 1025
Kzo9I GATC 7 cut(s) 44, 121, 472, 481, 527, 1284, 1315
LmnI GCTCC 3 cut(s) 80, 295, 675
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 825, 951
MaeI CTAG 2 cut(s) 149, 552
MaeII ACGT 2 cut(s) 335, 532
MaeIII GTNAC 2 cut(s) 167, 619
MalI GATC 7 cut(s) 46, 123, 474, 483, 529, 1286, 1317
MbiI CCGCTC 1 cut(s) 135
MboI GATC 7 cut(s) 44, 121, 472, 481, 527, 1284, 1315
MboII GAAGA 9 cut(s) 239, 363, 524, 720, 983, 1197, 1250, 1388, 1464
MfeI CAATTG 2 cut(s) 1419, 1463
MflI RGATCY 1 cut(s) 1284
MluCI AATT 8 cut(s) 26, 285, 357, 712, 739, 874, 1419, 1463
MmeI TCCRAC 1 cut(s) 833
MroI TCCGGA 1 cut(s) 1025
MseI TTAA 6 cut(s) 321, 380, 453, 501, 959, 1017
MslI CAYNNNNRTG 1 cut(s) 1233
MspI CCGG 2 cut(s) 748, 1026
MspR9I CCNGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
MunI CAATTG 2 cut(s) 1419, 1463
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 7 cut(s) 44, 121, 472, 481, 527, 1284, 1315
NlaIII CATG 4 cut(s) 270, 401, 435, 1337
NlaIV GGNNCC 2 cut(s) 905, 1286
NmeAIII GCCGAG 1 cut(s) 118
NspI RCATGY 1 cut(s) 1337
PaeI GCATGC 1 cut(s) 1337
PceI AGGCCT 1 cut(s) 1204
PctI GAATGC 1 cut(s) 701
PfeI GAWTC 5 cut(s) 585, 626, 897, 1010, 1094
PflMI CCANNNNNTGG 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 1 cut(s) 92
Ple19I CGATCG 1 cut(s) 124
PpuMI RGGWCCY 1 cut(s) 903
PshAI GACNNNNGTC 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 903
Psp6I CCWGG 6 cut(s) 772, 844, 867, 1109, 1162, 1192
PspFI CCCAGC 2 cut(s) 859, 1479
PspGI CCWGG 6 cut(s) 772, 844, 867, 1109, 1162, 1192
PspN4I GGNNCC 2 cut(s) 905, 1286
PspPI GGNCC 2 cut(s) 19, 903
PspPPI RGGWCCY 1 cut(s) 903
PstI CTGCAG 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 1 cut(s) 1284
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 1233
SaqAI TTAA 6 cut(s) 321, 380, 453, 501, 959, 1017
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 7 cut(s) 44, 121, 472, 481, 527, 1284, 1315
Sau96I GGNCC 2 cut(s) 19, 903
ScrFI CCNGG 6 cut(s) 774, 846, 869, 1111, 1164, 1194
SfaNI GCATC 2 cut(s) 825, 951
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 2 cut(s) 19, 903
SmiMI CAYNNNNRTG 1 cut(s) 1233
SphI GCATGC 1 cut(s) 1337
Sse9I AATT 8 cut(s) 26, 285, 357, 712, 739, 874, 1419, 1463
SseBI AGGCCT 1 cut(s) 1204
SsiI CCGC 1 cut(s) 133
SspMI CTAG 2 cut(s) 149, 552
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 6 cut(s) 772, 844, 867, 1109, 1162, 1192
TaaI ACNGT 4 cut(s) 23, 203, 634, 853
TaiI ACGT 2 cut(s) 338, 535
TaqI TCGA 7 cut(s) 563, 629, 791, 895, 1092, 1129, 1168
TasI AATT 8 cut(s) 26, 285, 357, 712, 739, 874, 1419, 1463
TfiI GAWTC 5 cut(s) 585, 626, 897, 1010, 1094
Tru1I TTAA 6 cut(s) 321, 380, 453, 501, 959, 1017
Tru9I TTAA 6 cut(s) 321, 380, 453, 501, 959, 1017
TscAI CASTG 5 cut(s) 616, 674, 956, 1235, 1497
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 7 cut(s) 720, 977, 1059, 1251, 1375, 1464, 1488
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 5 cut(s) 616, 674, 956, 1235, 1497
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 19, 903
XapI RAATTY 3 cut(s) 357, 712, 874
XceI RCATGY 1 cut(s) 1337
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XspI CTAG 2 cut(s) 149, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.