Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007137

Physical Location & Seq

Genomic Coordinates Reverse (-)

55369197 .. 55372918

Gene Structure 3722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0432300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGGTACTCCAGGAAAATGGCTCAAGTCCCTCATCAATCCCAAAAAGCTCATAACAACTGACCAAGAGAAGAGCAAGAAGAAATGGAAGCTATGGAGGAGTTCATCGGATGGGTTAGGATCTTCGAGTAAAGGTGGTGTGAAGAAGGTGGCTGGTTCAGAGCTGTTGGATTCTGCAAATGTAGTCGATCATGAGTTGGCTGCTGCCATGGCTACTCTGCTTCGGGCTCAGCCTAAAGATTTCAAGATAGTCAAGCGAGAGTGGGCTGCTATTCGGATCCAAACCGTGTTTCGGGGATTCTTGGCAAGGCAGGCTTTAAGGGCCTTGAAAGCATTAGTAAGGCTTCAAGCTATATTTCGTGGGAGGCGGGTCAGGAAGCAAGCAGCTGTTACATTGAGGTGCATGCAGGCACTTGTTCGAGTTCAGACTCGAGTTCGAGCACAGAGATCCTCAGAAGCTGCGCAAGACTTACTGGATGAACGTCAGTCCCAAGCTGATGATCCCGTTAAGCAGGCTGAGCAAGGATGGTGTGATAGTCCAGGAACAGTGAGTGAAGTTAGAGCAAAGCTACAAATGAGGCAAAGAGGAAACATAAAGAGGGATCGAGCAATTGCATACTCCCTCTCTCAACAGAGGCCAAGATCATGTTCCAGTCCATATAGCAGGACTAACAAGACAGCAAAGGTTACTAAGAGTCCAAGAGTAGGCAATAACAATTCTGAATGGAACTGGTTAGAAAATTGGATGGCGACCAAGCCATGGGAAAATAGACTGATGGAGGAGGTCCAAACTGTGCCATCAGAGATGAATCTTCATAATTCCAGGAAAAGTGGAGATGACATTGCTGGCTTTTATCCATTTTCTTCAGAACAGAACTCAGTGAAAGTGCGAAGGAATACTGTCACAACCAGGATTTCTGCTAGGCCATCTCAATCAATGAGTCCAATAACTCGCTCATCTTCTACTCCAAGTTCTGATTTTCTAAAGGACGAGAGCTCGTCATCCACTTCATTTACTTCTGCATCACCTACTATAGCGTCTAGCAACGCTACCAAGGTAGAGGAAAGTAATATGTGCAAACCAAGCTACATGAATCTCACAGAGTCAATTAAGGCGAAGAAGAGAAGTTCCAATGGTCAAAATATGCAGAGGTATTTCATGGAGGAGTATCAGTTCCATAGCAAAGCTCTTTCTAATGGGGATACAAGGAGCATCAATGGGGATTCTGATTTTTCGGTTAATTTCTGCAATGATCTATACCCTCCGGTATCATTGGGAAGAGCAGAAAGAGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0006355 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007142 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043934 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051321 GO:0051704 GO:0060255 GO:0061983 GO:0065007 GO:0071840 GO:0080090 GO:0140013 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

432

Amino Acids

48.52

Weight (kDa)

10.25

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06660 AT2G30820 AT2G30820
fragaria_vesca	FvH4_6g38770 FvH4_6g38770 FvH4_6g38770
malus_domestica	MD00G1163200.v1.1 MD00G1163300.v1.1 MD09G1146900.v1.1 MD17G1133500.v1.1
prunus_persica	Prupe.3G178400_v2.0.a1 Prupe.3G178400_v2.0.a1
pyrus_communis	pycom09g06740 pycom17g12800
rosa_chinensis	RchiOBHm_Chr2g0152321
rosa_laevigata	RLG00000020628
rosa_multiflora	Rmu_sc0004002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095800
rosa_rugosa	Rorug02G0432300 Rorug02G0432400
rosa_samantha	Rh2AG493900 Rh2BG506200 Rh2CG480200 Rh2DG517300
rosa_wichuraiana	Rw2G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	759
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 609
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	291, 704, 759
AgsI	TTSAA	3 cut(s)	244, 328, 347
AjnI	CCWGG	4 cut(s)	10, 538, 821, 908
AjuI	GAANNNNNNNTTGG	4 cut(s)	273, 305, 631, 663
AloI	GAACNNNNNNTCC	2 cut(s)	1157, 1189
Alw21I	GWGCWC	2 cut(s)	442, 998
AlwI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 609
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	3 cut(s)	321, 635, 923
ApeKI	GCWGC	5 cut(s)	200, 203, 266, 383, 458
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	321, 784
AsuHPI	GGTGA	1 cut(s)	1017
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	784
BamHI	GGATCC	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	229, 998
Bbv12I	GWGCWC	2 cut(s)	442, 998
BbvI	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BccI	CCATC	6 cut(s)	104, 519, 739, 769, 805, 934
BciT130I	CCWGG	4 cut(s)	12, 540, 823, 910
BciVI	GTATCC	1 cut(s)	1195
BfaI	CTAG	2 cut(s)	921, 1041
BfmI	CTRYAG	1 cut(s)	1032
BfuI	GTATCC	1 cut(s)	1195
BisI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
BlpI	GCTNAGC	2 cut(s)	228, 516
BlsI	GCNGC	5 cut(s)	202, 205, 268, 385, 460
Bme1390I	CCNGG	4 cut(s)	12, 540, 823, 910
Bme18I	GGWCC	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	321, 784
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	4 cut(s)	12, 540, 823, 910
BmsI	GCATC	2 cut(s)	1031, 1221
Bpu1102I	GCTNAGC	2 cut(s)	228, 516
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	207, 758, 1053
BsaWI	WCCGGW	1 cut(s)	1264
BsaXI	ACNNNNNCTCC	2 cut(s)	1157, 1187
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 704, 759
Bse1I	ACTGG	3 cut(s)	477, 651, 734
Bse3DI	GCAATG	2 cut(s)	840, 1255
BseBI	CCWGG	4 cut(s)	12, 540, 823, 910
BseDI	CCNNGG	3 cut(s)	207, 758, 1053
BseGI	GGATG	5 cut(s)	115, 481, 530, 750, 1001
BseLI	CCNNNNNNNGG	3 cut(s)	291, 704, 759
BseMI	GCAATG	2 cut(s)	840, 1255
BseMII	CTCAG	4 cut(s)	242, 465, 507, 891
BseNI	ACTGG	3 cut(s)	477, 651, 734
BseRI	GAGGAG	3 cut(s)	112, 794, 1178
BseXI	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BshFI	GGCC	3 cut(s)	323, 637, 925
BsiHKAI	GWGCWC	2 cut(s)	442, 998
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	1265
BslFI	GGGAC	2 cut(s)	13, 472
BslI	CCNNNNNNNGG	3 cut(s)	291, 704, 759
BsmFI	GGGAC	2 cut(s)	13, 472
BsnI	GGCC	3 cut(s)	323, 637, 925
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	3 cut(s)	229, 442, 998
Bsp143I	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1252
Bsp1720I	GCTNAGC	2 cut(s)	228, 516
Bsp19I	CCATGG	2 cut(s)	207, 758
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	3 cut(s)	323, 637, 925
BspCNI	CTCAG	4 cut(s)	241, 464, 508, 890
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 609
BspQI	GCTCTTC	2 cut(s)	65, 1273
BsrDI	GCAATG	2 cut(s)	840, 1255
BsrI	ACTGG	3 cut(s)	477, 651, 734
BssECI	CCNNGG	3 cut(s)	207, 758, 1053
BssMI	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1252
BssT1I	CCWWGG	3 cut(s)	207, 758, 1053
Bst2UI	CCWGG	4 cut(s)	12, 540, 823, 910
Bst4CI	ACNGT	4 cut(s)	286, 547, 793, 901
Bst6I	CTCTTC	3 cut(s)	65, 1115, 1273
BstC8I	GCNNGC	6 cut(s)	312, 381, 404, 408, 513, 847
BstDEI	CTNAG	5 cut(s)	228, 451, 516, 690, 877
BstDSI	CCRYGG	2 cut(s)	207, 758
BstF5I	GGATG	5 cut(s)	115, 481, 530, 750, 1001
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	8 cut(s)	122, 190, 279, 449, 502, 604, 644, 1255
BstMBI	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1252
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1083, 1289
BstNI	CCWGG	4 cut(s)	12, 540, 823, 910
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	4 cut(s)	10, 538, 821, 908
BstSFI	CTRYAG	1 cut(s)	1032
BstV1I	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BstX2I	RGATCY	3 cut(s)	119, 276, 446
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	3 cut(s)	119, 276, 446
BsuI	GTATCC	1 cut(s)	1195
BsuRI	GGCC	3 cut(s)	323, 637, 925
BtgI	CCRYGG	2 cut(s)	207, 758
BtsCI	GGATG	5 cut(s)	115, 481, 530, 750, 1001
BtsIMutI	CAGTG	2 cut(s)	552, 885
Cac8I	GCNNGC	6 cut(s)	312, 381, 404, 408, 513, 847
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	321, 784
CseI	GACGC	1 cut(s)	1026
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	7 cut(s)	191, 208, 403, 645, 759, 1090, 1159
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	5 cut(s)	228, 451, 516, 690, 877
DpnI	GATC	8 cut(s)	121, 189, 278, 448, 501, 603, 643, 1254
DpnII	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1252
Eam1104I	CTCTTC	3 cut(s)	65, 1115, 1273
EarI	CTCTTC	3 cut(s)	65, 1115, 1273
Ecl136II	GAGCTC	1 cut(s)	996
Eco130I	CCWWGG	3 cut(s)	207, 758, 1053
Eco24I	GRGCYC	2 cut(s)	229, 998
Eco47I	GGWCC	1 cut(s)	784
Eco53kI	GAGCTC	1 cut(s)	996
Eco57I	CTGAAG	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	996
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	4 cut(s)	10, 538, 821, 908
EcoT14I	CCWWGG	3 cut(s)	207, 758, 1053
EcoT38I	GRGCYC	2 cut(s)	229, 998
ErhI	CCWWGG	3 cut(s)	207, 758, 1053
FaeI	CATG	7 cut(s)	194, 211, 406, 648, 762, 1093, 1162
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	2 cut(s)	13, 472
FatI	CATG	7 cut(s)	190, 207, 402, 644, 758, 1089, 1158
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
FokI	GGATG	5 cut(s)	122, 488, 537, 757, 988
FriOI	GRGCYC	2 cut(s)	229, 998
Fsp4HI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
FspBI	CTAG	2 cut(s)	921, 1041
FspI	TGCGCA	1 cut(s)	462
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
HaeIII	GGCC	3 cut(s)	323, 637, 925
HapII	CCGG	1 cut(s)	1265
HgaI	GACGC	1 cut(s)	1026
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	7 cut(s)	194, 211, 406, 648, 762, 1093, 1162
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	9 cut(s)	170, 297, 427, 694, 808, 940, 1093, 1103, 1223
HpaII	CCGG	1 cut(s)	1265
HphI	GGTGA	1 cut(s)	1017
Hpy188III	TCNNGA	3 cut(s)	191, 244, 373
HpyAV	CCTTC	2 cut(s)	139, 885
HpyCH4III	ACNGT	4 cut(s)	286, 547, 793, 901
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	8 cut(s)	176, 402, 406, 614, 1022, 1077, 1147, 1248
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1083, 1289
HpyF3I	CTNAG	5 cut(s)	228, 451, 516, 690, 877
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	7 cut(s)	194, 211, 406, 648, 762, 1093, 1162
HspAI	GCGC	1 cut(s)	461
Kzo9I	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1252
LguI	GCTCTTC	2 cut(s)	65, 1273
LmnI	GCTCC	1 cut(s)	1209
Lsp1109I	GCAGC	5 cut(s)	187, 190, 253, 395, 445
LweI	GCATC	2 cut(s)	1031, 1221
MaeI	CTAG	2 cut(s)	921, 1041
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	3 cut(s)	388, 685, 901
MalI	GATC	8 cut(s)	121, 189, 278, 448, 501, 603, 643, 1254
MboI	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1252
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	3 cut(s)	119, 276, 446
MhlI	GDGCHC	3 cut(s)	229, 442, 998
MluCI	AATT	6 cut(s)	609, 715, 739, 817, 1107, 1240
MlyI	GAGTC	4 cut(s)	421, 703, 949, 1112
MmeI	TCCRAC	1 cut(s)	147
MseI	TTAA	4 cut(s)	317, 507, 1110, 1239
MslI	CAYNNNNRTG	1 cut(s)	397
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	1265
MspR9I	CCNGG	4 cut(s)	12, 540, 823, 910
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	4 cut(s)	12, 540, 823, 910
MwoI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1083, 1289
NcoI	CCATGG	2 cut(s)	207, 758
NdeII	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1252
NlaIII	CATG	7 cut(s)	194, 211, 406, 648, 762, 1093, 1162
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	901
NsbI	TGCGCA	1 cut(s)	462
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PaeR7I	CTCGAG	1 cut(s)	429
PagI	TCATGA	1 cut(s)	190
PciSI	GCTCTTC	2 cut(s)	65, 1273
PfeI	GAWTC	5 cut(s)	170, 297, 808, 1093, 1223
PflMI	CCANNNNNTGG	1 cut(s)	759
PfoI	TCCNGGA	3 cut(s)	10, 538, 821
PkrI	GCNGC	5 cut(s)	202, 205, 268, 385, 460
PleI	GAGTC	4 cut(s)	421, 702, 948, 1111
PpsI	GAGTC	4 cut(s)	421, 702, 948, 1111
Psp124BI	GAGCTC	1 cut(s)	998
Psp6I	CCWGG	4 cut(s)	10, 538, 821, 908
PspGI	CCWGG	4 cut(s)	10, 538, 821, 908
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	321, 784
PspXI	VCTCGAGB	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	3 cut(s)	119, 276, 446
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	998
SapI	GCTCTTC	2 cut(s)	65, 1273
SaqAI	TTAA	4 cut(s)	317, 507, 1110, 1239
SatI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
Sau3AI	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1252
Sau96I	GGNCC	2 cut(s)	321, 784
SchI	GAGTC	4 cut(s)	421, 703, 949, 1112
ScrFI	CCNGG	4 cut(s)	12, 540, 823, 910
SduI	GDGCHC	3 cut(s)	229, 442, 998
SfaNI	GCATC	2 cut(s)	1031, 1221
SfcI	CTRYAG	1 cut(s)	1032
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	784
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	23, 429
SmoI	CTYRAG	2 cut(s)	23, 429
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	6 cut(s)	609, 715, 739, 817, 1107, 1240
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	2 cut(s)	921, 1041
SstI	GAGCTC	1 cut(s)	998
StyD4I	CCNGG	4 cut(s)	10, 538, 821, 908
StyI	CCWWGG	3 cut(s)	207, 758, 1053
TaaI	ACNGT	4 cut(s)	286, 547, 793, 901
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	6 cut(s)	125, 186, 418, 430, 436, 604
TasI	AATT	6 cut(s)	609, 715, 739, 817, 1107, 1240
TfiI	GAWTC	5 cut(s)	170, 297, 808, 1093, 1223
Tru1I	TTAA	4 cut(s)	317, 507, 1110, 1239
Tru9I	TTAA	4 cut(s)	317, 507, 1110, 1239
TscAI	CASTG	2 cut(s)	552, 885
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	5 cut(s)	200, 203, 266, 383, 458
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	7 cut(s)	93, 492, 803, 821, 999, 1106, 1147
TspRI	CASTG	2 cut(s)	552, 885
Van91I	CCANNNNNTGG	1 cut(s)	759
VpaK11BI	GGWCC	1 cut(s)	784
XceI	RCATGY	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	429
XspI	CTAG	2 cut(s)	921, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.