Rorug02G0432400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
55373789 .. 55376687
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0432400.1

Sequence Viewer

Length: 1461 bp
ATGGTGACAATGACATCTATCAGTTTAGTGTCCAAGAGAACGAAGGTGATGTCAAGAACAGTTAGTTTTGAGAACACCAATTCAAGCAACACCAACAGATCCGATGGCCTAGATACATTGGTTTTTGAAAAATCTGTATGCTACAAGAAAAGGAAAGCAGGACAACTAAAGCTCGATACTTCAACTTTGCTACCCAAGCTAGAAGGTTGTGTTTCTCCACAGACCCCACGCGAGCTTGATGAAGCTGCAATCAAGCTGCAGAAATTTTACAAGAGTTACCGAACTAGACGAAACCTTGCAGATTGTGCTGTTGTTGTCGAGGAGCTATGGTGGAAGGCATTAGACTTTGCTGCACTTAGGCGGAGCTCTGTCTCATTCTTTGAATCTGTTGAATCAGAAACTGCAGTTTCCAGATGGGCAAGGGCTAAGACTAGAGCTGCCAAGGTTGGGAAGGGTTTGTCCAAGGATGAGAAGGCTCAGAAATTAGCTTTAAGACATTGGCTTGAGGCTATTGATCCACGGCATCGATATGGACATAATCTGCACTTGTATTATGATGTCTGGTTTAATAGTGCGAGCTCTCAACCTTTCTTCTACTGGTTGGATGTTGGAGATGGTAAAGAAGAAAATCTTGAGAAGTGTCCAAGAGCGGATCTTCAACGCCAATGCATCAAGTACCTTGGACCGAATGAGAGGGAAACATATGAAGTGATAGTGGCAAGTGGGAAGCTTGTATACAGACAAAGTGGCAGCCTTGTGACTACTACTGAGGGTTCCAAATGGATCTTTGTTCTCAGTGCATCGAGGATTATGTATGTCGCGGAGAAGAAGAAAGGCTATTTCCAGCACTCTAGTTTTCTATCCGGAGGTGCCACAATTGCAGCGGGGAGATTAGTTGCTTCTGATGGGGTTCTTGAGGCTGTATGGTGCTACAGTGGTCATTATCGCCCGACAGAAGAGCACTTTTTGGAGTTCATTAGCTTCTTGGAGGAGCAACAGGTGGACTTGACAAATGTCAAAAAACATCCTATAGATGATGATATTCCACCTTCAGAATCTACCAGTAAAGATATGAGCACCCTTGAGGATATCCCATCGGCAAACATTGAGAAGAGTACTAATGAAAATGAGCGTGCCATTGACGCTTCCATAGTAAGTGATGACAATCAAGACATTGTGGAAGCACCAAAATTTGACTCGGGAAGGGGATTGCCTTGCAAATGGACTACAGGAGCTGGTCCTCGAATCGGATGTGTGAGAGACTACCCCACACGGCTGCAATTTCAGGCACTTGAGCAAGTCAATCTGTCACCAAGAATCAAACCAGAACGCACTGCAACCAATAACACCCCAGTGCCTTCACCAAGACCTAGTCCCAAGTTCCACTTATCACCTAGACTTGCATATATGGGACTTCCTAGCCCCAGAAGATTGCATAATTTAACTCCCTCCTTAGATTAA

Protein Analysis

486

Amino Acids

54.86

Weight (kDa)

8.88

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 869
AccBSI CCGCTC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 735
AccII CGCG 2 cut(s) 231, 821
AccIII TCCGGA 1 cut(s) 863
AciI CCGC 4 cut(s) 361, 650, 821, 884
AclWI GGATC 4 cut(s) 93, 509, 660, 791
AcsI RAATTY 2 cut(s) 263, 1190
AcuI CTGAAG 1 cut(s) 1035
AfaI GTAC 2 cut(s) 677, 1117
AfiI CCNNNNNNNGG 2 cut(s) 447, 1247
AgsI TTSAA 6 cut(s) 84, 128, 183, 383, 392, 659
AleI CACNNNNGTG 1 cut(s) 1352
Alw21I GWGCWC 4 cut(s) 368, 581, 963, 1079
Alw26I GTCTC 2 cut(s) 376, 1254
AlwI GGATC 4 cut(s) 93, 509, 660, 791
AlwNI CAGNNNCTG 2 cut(s) 401, 1235
Ama87I CYCGRG 1 cut(s) 1198
Aor13HI TCCGGA 1 cut(s) 863
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 7 cut(s) 245, 256, 350, 437, 750, 881, 1276
ApoI RAATTY 2 cut(s) 263, 1190
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspS9I GGNCC 2 cut(s) 683, 1238
AsuHPI GGTGA 5 cut(s) 16, 58, 1302, 1353, 1383
AvaI CYCGRG 1 cut(s) 1198
AvaII GGWCC 2 cut(s) 683, 1238
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BanI GGYRCC 1 cut(s) 869
BanII GRGCYC 2 cut(s) 368, 581
BarI GAAGNNNNNNTAC 2 cut(s) 719, 751
Bbv12I GWGCWC 4 cut(s) 368, 581, 963, 1079
BbvI GCAGC 7 cut(s) 232, 243, 337, 424, 762, 893, 1263
BccI CCATC 5 cut(s) 98, 408, 608, 899, 1102
BceAI ACGGC 2 cut(s) 536, 1289
BcoDI GTCTC 2 cut(s) 376, 1254
BfaI CTAG 8 cut(s) 110, 200, 285, 432, 852, 1371, 1395, 1419
BfmI CTRYAG 5 cut(s) 257, 402, 931, 1029, 1227
BisI GCNGC 7 cut(s) 246, 257, 351, 438, 751, 882, 1277
BlsI GCNGC 7 cut(s) 247, 258, 352, 439, 752, 883, 1278
BmcAI AGTACT 1 cut(s) 1117
Bme18I GGWCC 2 cut(s) 683, 1238
BmeT110I CYCGRG 1 cut(s) 1198
BmgT120I GGNCC 2 cut(s) 683, 1238
BmiI GGNNCC 2 cut(s) 775, 871
BmrI ACTGGG 1 cut(s) 1346
BmsI GCATC 3 cut(s) 532, 678, 809
BmuI ACTGGG 1 cut(s) 1346
BoxI GACNNNNGTC 1 cut(s) 1013
BpuEI CTTGAG 5 cut(s) 524, 653, 935, 1103, 1313
Bsa29I ATCGAT 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 1164
BsaJI CCNNGG 4 cut(s) 441, 462, 518, 679
BsaWI WCCGGW 1 cut(s) 863
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 1247
Bse1I ACTGG 3 cut(s) 602, 1062, 1352
Bse8I GATNNNNATC 1 cut(s) 1164
BseAI TCCGGA 1 cut(s) 863
BseCI ATCGAT 1 cut(s) 526
BseDI CCNNGG 4 cut(s) 441, 462, 518, 679
BseGI GGATG 4 cut(s) 472, 610, 1024, 1256
BseJI GATNNNNATC 1 cut(s) 1164
BseLI CCNNNNNNNGG 2 cut(s) 447, 1247
BseMII CTCAG 3 cut(s) 491, 759, 808
BseNI ACTGG 3 cut(s) 602, 1062, 1352
BseRI GAGGAG 2 cut(s) 335, 1004
BseXI GCAGC 7 cut(s) 232, 243, 337, 424, 762, 893, 1263
BsgI GTGCAG 2 cut(s) 336, 527
Bsh1236I CGCG 2 cut(s) 231, 821
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 869
BshVI ATCGAT 1 cut(s) 526
BsiHKAI GWGCWC 4 cut(s) 368, 581, 963, 1079
BsiHKCI CYCGRG 1 cut(s) 1198
BsiSI CCGG 1 cut(s) 864
BslFI GGGAC 2 cut(s) 1359, 1425
BslI CCNNNNNNNGG 2 cut(s) 447, 1247
BsmAI GTCTC 2 cut(s) 376, 1254
BsmFI GGGAC 2 cut(s) 1359, 1425
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 1198
Bsp1286I GDGCHC 4 cut(s) 368, 581, 963, 1079
Bsp13I TCCGGA 1 cut(s) 863
Bsp143I GATC 4 cut(s) 98, 514, 652, 783
BspACI CCGC 4 cut(s) 361, 650, 821, 884
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 490, 760, 807
BspDI ATCGAT 1 cut(s) 526
BspEI TCCGGA 1 cut(s) 863
BspFNI CGCG 2 cut(s) 231, 821
BspLI GGNNCC 2 cut(s) 775, 871
BspMAI CTGCAG 2 cut(s) 261, 406
BspPI GGATC 4 cut(s) 93, 509, 660, 791
BspQI GCTCTTC 1 cut(s) 951
BspT107I GGYRCC 1 cut(s) 869
BsrBI CCGCTC 1 cut(s) 650
BsrI ACTGG 3 cut(s) 602, 1062, 1352
BssECI CCNNGG 4 cut(s) 441, 462, 518, 679
BssMI GATC 4 cut(s) 98, 514, 652, 783
BssNAI GTATAC 1 cut(s) 736
BssT1I CCWWGG 3 cut(s) 441, 462, 679
Bst1107I GTATAC 1 cut(s) 736
Bst4CI ACNGT 2 cut(s) 61, 935
Bst6I CTCTTC 2 cut(s) 951, 1106
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 233, 577, 1134
BstDEI CTNAG 6 cut(s) 356, 426, 477, 768, 794, 1453
BstDSI CCRYGG 1 cut(s) 518
BstF5I GGATG 4 cut(s) 472, 610, 1024, 1256
BstFNI CGCG 2 cut(s) 231, 821
BstKTI GATC 4 cut(s) 101, 517, 655, 786
BstMAI GTCTC 2 cut(s) 376, 1254
BstMBI GATC 4 cut(s) 98, 514, 652, 783
BstMWI GCNNNNNNNGC 4 cut(s) 196, 305, 878, 1142
BstPAI GACNNNNGTC 1 cut(s) 1013
BstSFI CTRYAG 5 cut(s) 257, 402, 931, 1029, 1227
BstUI CGCG 2 cut(s) 231, 821
BstV1I GCAGC 7 cut(s) 232, 243, 337, 424, 762, 893, 1263
BstX2I RGATCY 3 cut(s) 98, 652, 783
BstYI RGATCY 3 cut(s) 98, 652, 783
BstZ17I GTATAC 1 cut(s) 736
Bsu15I ATCGAT 1 cut(s) 526
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 526
BtgI CCRYGG 1 cut(s) 518
BtsCI GGATG 4 cut(s) 472, 610, 1024, 1256
BtsI GCAGTG 1 cut(s) 1332
BtsIMutI CAGTG 4 cut(s) 802, 940, 1332, 1359
Cac8I GCNNGC 3 cut(s) 233, 577, 1134
CaiI CAGNNNCTG 2 cut(s) 401, 1235
Cfr13I GGNCC 2 cut(s) 683, 1238
ClaI ATCGAT 1 cut(s) 526
CseI GACGC 1 cut(s) 1151
Csp6I GTAC 2 cut(s) 676, 1116
CviQI GTAC 2 cut(s) 676, 1116
DdeI CTNAG 6 cut(s) 356, 426, 477, 768, 794, 1453
DpnI GATC 4 cut(s) 100, 516, 654, 785
DpnII GATC 4 cut(s) 98, 514, 652, 783
Eam1104I CTCTTC 2 cut(s) 951, 1106
EarI CTCTTC 2 cut(s) 951, 1106
EciI GGCGGA 1 cut(s) 376
Ecl136II GAGCTC 2 cut(s) 366, 579
Eco130I CCWWGG 3 cut(s) 441, 462, 679
Eco24I GRGCYC 2 cut(s) 368, 581
Eco32I GATATC 1 cut(s) 1090
Eco47I GGWCC 2 cut(s) 683, 1238
Eco53kI GAGCTC 2 cut(s) 366, 579
Eco57I CTGAAG 1 cut(s) 1035
Eco88I CYCGRG 1 cut(s) 1198
EcoICRI GAGCTC 2 cut(s) 366, 579
EcoRV GATATC 1 cut(s) 1090
EcoT14I CCWWGG 3 cut(s) 441, 462, 679
EcoT22I ATGCAT 1 cut(s) 671
EcoT38I GRGCYC 2 cut(s) 368, 581
ErhI CCWWGG 3 cut(s) 441, 462, 679
FalI AAGNNNNNCTT 4 cut(s) 615, 647, 1370, 1402
FaqI GGGAC 2 cut(s) 1359, 1425
FauI CCCGC 1 cut(s) 877
FauNDI CATATG 1 cut(s) 703
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 7 cut(s) 246, 257, 351, 438, 751, 882, 1277
FokI GGATG 4 cut(s) 479, 617, 1011, 1263
FriOI GRGCYC 2 cut(s) 368, 581
Fsp4HI GCNGC 7 cut(s) 246, 257, 351, 438, 751, 882, 1277
FspBI CTAG 8 cut(s) 110, 200, 285, 432, 852, 1371, 1395, 1419
GluI GCNGC 7 cut(s) 246, 257, 351, 438, 751, 882, 1277
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 864
HgaI GACGC 1 cut(s) 1151
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 6 cut(s) 383, 392, 1055, 1196, 1245, 1317
HpaII CCGG 1 cut(s) 864
HphI GGTGA 5 cut(s) 16, 58, 1302, 1353, 1383
Hpy166II GTNNAC 2 cut(s) 736, 1003
Hpy188I TCNGA 6 cut(s) 103, 397, 480, 904, 1054, 1250
Hpy188III TCNNGA 7 cut(s) 54, 411, 632, 864, 914, 1169, 1200
Hpy8I GTNNAC 2 cut(s) 736, 1003
HpyAV CCTTC 8 cut(s) 37, 197, 328, 445, 466, 1059, 1197, 1368
HpyCH4III ACNGT 2 cut(s) 61, 935
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 305, 878, 1142
HpyF3I CTNAG 6 cut(s) 356, 426, 477, 768, 794, 1453
Kpn2I TCCGGA 1 cut(s) 863
Kzo9I GATC 4 cut(s) 98, 514, 652, 783
LguI GCTCTTC 1 cut(s) 951
LmnI GCTCC 4 cut(s) 322, 363, 991, 1232
Lsp1109I GCAGC 7 cut(s) 232, 243, 337, 424, 762, 893, 1263
LweI GCATC 3 cut(s) 532, 678, 809
MaeI CTAG 8 cut(s) 110, 200, 285, 432, 852, 1371, 1395, 1419
MaeIII GTNAC 4 cut(s) 4, 275, 757, 1308
MalI GATC 4 cut(s) 100, 516, 654, 785
MbiI CCGCTC 1 cut(s) 650
MboI GATC 4 cut(s) 98, 514, 652, 783
MboII GAAGA 8 cut(s) 583, 635, 647, 838, 841, 968, 1123, 1440
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 3 cut(s) 98, 652, 783
MhlI GDGCHC 4 cut(s) 368, 581, 963, 1079
MluCI AATT 7 cut(s) 79, 263, 482, 876, 1190, 1280, 1438
MlyI GAGTC 1 cut(s) 1190
MmeI TCCRAC 2 cut(s) 582, 589
Mph1103I ATGCAT 1 cut(s) 671
MroI TCCGGA 1 cut(s) 863
MseI TTAA 4 cut(s) 491, 567, 1442, 1459
MslI CAYNNNNRTG 2 cut(s) 528, 1352
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 1 cut(s) 864
MunI CAATTG 1 cut(s) 876
MvnI CGCG 2 cut(s) 231, 821
MwoI GCNNNNNNNGC 4 cut(s) 196, 305, 878, 1142
NdeI CATATG 1 cut(s) 703
NdeII GATC 4 cut(s) 98, 514, 652, 783
NlaIV GGNNCC 2 cut(s) 775, 871
NmuCI GTSAC 3 cut(s) 4, 757, 1308
NsiI ATGCAT 1 cut(s) 671
OliI CACNNNNGTG 1 cut(s) 1352
PciSI GCTCTTC 1 cut(s) 951
PfeI GAWTC 5 cut(s) 383, 392, 1055, 1245, 1317
PflFI GACNNNGTC 1 cut(s) 1371
PkrI GCNGC 7 cut(s) 247, 258, 352, 439, 752, 883, 1278
PleI GAGTC 1 cut(s) 1190
PpsI GAGTC 1 cut(s) 1190
PshAI GACNNNNGTC 1 cut(s) 1013
Psp124BI GAGCTC 2 cut(s) 368, 581
PspN4I GGNNCC 2 cut(s) 775, 871
PspPI GGNCC 2 cut(s) 683, 1238
PstI CTGCAG 2 cut(s) 261, 406
PstNI CAGNNNCTG 2 cut(s) 401, 1235
PsuI RGATCY 3 cut(s) 98, 652, 783
PsyI GACNNNGTC 1 cut(s) 1371
RsaI GTAC 2 cut(s) 677, 1117
RsaNI GTAC 2 cut(s) 676, 1116
RseI CAYNNNNRTG 2 cut(s) 528, 1352
SacI GAGCTC 2 cut(s) 368, 581
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 4 cut(s) 491, 567, 1442, 1459
SatI GCNGC 7 cut(s) 246, 257, 351, 438, 751, 882, 1277
Sau3AI GATC 4 cut(s) 98, 514, 652, 783
Sau96I GGNCC 2 cut(s) 683, 1238
ScaI AGTACT 1 cut(s) 1117
SchI GAGTC 1 cut(s) 1190
SduI GDGCHC 4 cut(s) 368, 581, 963, 1079
SfaNI GCATC 3 cut(s) 532, 678, 809
SfcI CTRYAG 5 cut(s) 257, 402, 931, 1029, 1227
SinI GGWCC 2 cut(s) 683, 1238
SmiMI CAYNNNNRTG 2 cut(s) 528, 1352
SmlI CTYRAG 5 cut(s) 503, 632, 914, 1082, 1292
SmoI CTYRAG 5 cut(s) 503, 632, 914, 1082, 1292
Sse9I AATT 7 cut(s) 79, 263, 482, 876, 1190, 1280, 1438
SsiI CCGC 4 cut(s) 361, 650, 821, 884
SspMI CTAG 8 cut(s) 110, 200, 285, 432, 852, 1371, 1395, 1419
SstI GAGCTC 2 cut(s) 368, 581
StyI CCWWGG 3 cut(s) 441, 462, 679
TaaI ACNGT 2 cut(s) 61, 935
TaqI TCGA 5 cut(s) 174, 318, 526, 803, 1243
TaqII GACCGA 1 cut(s) 700
TasI AATT 7 cut(s) 79, 263, 482, 876, 1190, 1280, 1438
TatI WGTACW 1 cut(s) 1115
TfiI GAWTC 5 cut(s) 383, 392, 1055, 1245, 1317
Tru1I TTAA 4 cut(s) 491, 567, 1442, 1459
Tru9I TTAA 4 cut(s) 491, 567, 1442, 1459
TscAI CASTG 4 cut(s) 802, 940, 1339, 1359
TseFI GTSAC 3 cut(s) 4, 757, 1308
TseI GCWGC 7 cut(s) 245, 256, 350, 437, 750, 881, 1276
Tsp45I GTSAC 3 cut(s) 4, 757, 1308
TspDTI ATGAA 4 cut(s) 255, 720, 964, 1137
TspRI CASTG 4 cut(s) 802, 940, 1339, 1359
Tth111I GACNNNGTC 1 cut(s) 1371
VpaK11BI GGWCC 2 cut(s) 683, 1238
XapI RAATTY 2 cut(s) 263, 1190
XmiI GTMKAC 1 cut(s) 735
XspI CTAG 8 cut(s) 110, 200, 285, 432, 852, 1371, 1395, 1419
ZrmI AGTACT 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.