MD17G1133500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
11921987 .. 11925252
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1133500.v1.1.491

Sequence Viewer

Length: 1440 bp
ATGGGCTGCTTCTTCGGTTGCTTTCGGGACAAAGATGATCGCCACCTCCGCTCTCGCCCTCACCTCGTCTCTCAGTCCTCTCGTAACCCCCAGACGGAAGTCGTGTTATCCCAAAACCGTTTGTCTGCTCTATTTTCAGCTGAAGAGCAAGAAGGTTCTCCAAGCAAAGATAGGGAAAGTCCGCGTTATGGGTCTCCACAAATTGACAAGGAGCTCAGGAATGAGGCCAAGTTTCTTAAAGCTTGTGGTACCATAGCGGAAACCCCAGCTGAAATTCGTAAAGTGTCTTCAAGGTTAAATGGCTCACCCCATCATGATAGAGATTCAGAGCCTCCAAAATTCAACTCATGGCTCCCAAACACATCCTTTAGAAATCTTCAGCAAGAGTTGGATCAACCAGATCATCCCCTTACGCCTATGAAGTACAATGAAGAGTGGGGAATGGGTTCAGGTCCTTCTGAGCATACGCCTAGCAGTTGTGAATTCAACCAACAGAATACTGGTAGGATCGCTATCAGCTCTTCTGGAGGCAGCGGAATAGGTACTGATTCCACAGTGAAGAGTCATACTAACCGGACTGAGAATATTACAACTCCAGATGTCCAGTGCAGGAGCAAGGCTGTTCGCTTTGAATGCGATAATAATACAAATTCCTCCAGAGGTTCTTCATCCGAAAATTATAACCGGAGTTCAAAAGTATGTGAAACTCCAGGAAAACAGAGCATATCAAAGCCTTCGGTTTATCCAACCCCACTAACTCTTTCTGAGGAGATGCAGACACCAGGAACTGTTTTCCCTGCAAATCTCGAAAACTTTCCAAATGGAAGGGCAAGAATCAGGTCCCAGTATGTGTATTCAGTGCAAAACCCTGTAGACGGCATCTCTCAGTGGAATGTACTGAAAGACGAAGATCCTAAGTCACTTGGACATTCTGGTGAGCCAAGAGAATCTCTTAACGACTGGGGAAATGCAACCCCTACATCCGAAGAGGGGTCAAAACAAATGTCATCTGGACAAGAGGTCAATGTGGAATCAAGTTTGTCCGCGTGGCTGAAGCCGGTAACTCAAGATAACAACAATCACTTTGGTTATGTTCCTGGCCAAACTCGTCATTTTGGAAGAACTCCTGTGGACAGGCCTATCATTGGGCTTGTTGCTACTCACTGGAATGAAGATGAACATACTCGTGTCTCACCCAAGTGGTGGGATGGAAACGGAATCCCAAATTCAACAAACAAATACAAGGAGGATCAGAAGGTGAGTTGGCATGCCACCCCATTTGAAGAAAGGTTGGAAAAGGCACTGTCCGAAGAGAGTTTCATCTCGCAGAGAAAAAACATGGAGGGAAAGCCGATTGTTTTCGACGAGAACGATGAAAGTGACACAGCCCTTTCTCAGTTGCAAACGTCATCCCATCCGAAGTCCGTGGTTTCATTCTGA

Protein Analysis

480

Amino Acids

53.56

Weight (kDa)

5.84

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
Acc65I GGTACC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 1203
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 873
AccII CGCG 2 cut(s) 184, 1046
AciI CCGC 5 cut(s) 49, 182, 257, 534, 1044
AclWI GGATC 4 cut(s) 399, 515, 905, 1257
AcoI YGGCCR 1 cut(s) 1099
AcsI RAATTY 5 cut(s) 273, 338, 482, 649, 1225
AcuI CTGAAG 3 cut(s) 162, 362, 1073
AfaI GTAC 4 cut(s) 250, 425, 544, 897
AfiI CCNNNNNNNGG 6 cut(s) 94, 188, 875, 990, 1145, 1203
AgsI TTSAA 7 cut(s) 291, 343, 487, 632, 693, 1230, 1283
AhdI GACNNNNNGTC 1 cut(s) 1019
AjnI CCWGG 3 cut(s) 709, 781, 1096
AleI CACNNNNGTG 1 cut(s) 1198
AluBI AGCT 5 cut(s) 140, 214, 242, 269, 519
AluI AGCT 5 cut(s) 140, 214, 242, 269, 519
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 3 cut(s) 73, 198, 1195
AlwI GGATC 4 cut(s) 399, 515, 905, 1257
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 3 cut(s) 225, 1099, 1136
ApeKI GCWGC 2 cut(s) 6, 531
ApoI RAATTY 5 cut(s) 273, 338, 482, 649, 1225
ArsI GACNNNNNNTTYG 2 cut(s) 989, 1021
Asp700I GAANNNNTTC 2 cut(s) 445, 813
Asp718I GGTACC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 452, 840
AsuHPI GGTGA 5 cut(s) 53, 297, 947, 1185, 1270
AvaII GGWCC 2 cut(s) 452, 840
BalI TGGCCA 1 cut(s) 1101
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BauI CACGAG 1 cut(s) 1185
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 543
BccI CCATC 3 cut(s) 318, 1202, 1422
BceAI ACGGC 1 cut(s) 892
BciT130I CCWGG 3 cut(s) 711, 783, 1098
BcoDI GTCTC 3 cut(s) 73, 198, 1195
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 870
BisI GCNGC 2 cut(s) 7, 532
BlsI GCNGC 2 cut(s) 8, 533
Bme1390I CCNGG 3 cut(s) 711, 783, 1098
Bme18I GGWCC 2 cut(s) 452, 840
BmeRI GACNNNNNGTC 1 cut(s) 1019
BmgT120I GGNCC 2 cut(s) 452, 840
BmiI GGNNCC 3 cut(s) 250, 353, 842
BmrFI CCNGG 3 cut(s) 711, 783, 1098
BmrI ACTGGG 2 cut(s) 838, 970
BmsI GCATC 2 cut(s) 762, 888
BmuI ACTGGG 2 cut(s) 838, 970
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 4 cut(s) 546, 579, 640, 693
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 1050
BsaBI GATNNNNATC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 1425
BsaWI WCCGGW 2 cut(s) 573, 684
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 188, 875, 990, 1145, 1203
Bse118I RCCGGY 1 cut(s) 1057
Bse1I ACTGG 5 cut(s) 505, 604, 844, 965, 1169
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 3 cut(s) 711, 783, 1098
BseDI CCNNGG 1 cut(s) 1425
BseGI GGATG 7 cut(s) 362, 403, 668, 980, 1213, 1409, 1414
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 6 cut(s) 94, 188, 875, 990, 1145, 1203
BseMII CTCAG 7 cut(s) 86, 229, 450, 570, 756, 899, 1409
BseNI ACTGG 5 cut(s) 505, 604, 844, 965, 1169
BseRI GAGGAG 1 cut(s) 782
BseXI GCAGC 1 cut(s) 543
BseYI CCCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 628
Bsh1236I CGCG 2 cut(s) 184, 1046
BshFI GGCC 3 cut(s) 227, 1101, 1138
BshNI GGYRCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 3 cut(s) 574, 685, 1058
BslFI GGGAC 2 cut(s) 41, 826
BslI CCNNNNNNNGG 6 cut(s) 94, 188, 875, 990, 1145, 1203
BsmAI GTCTC 3 cut(s) 73, 198, 1195
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 41, 826
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 3 cut(s) 227, 1101, 1138
Bso31I GGTCTC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 6 cut(s) 37, 391, 400, 507, 910, 1249
BspACI CCGC 5 cut(s) 49, 182, 257, 534, 1044
BspANI GGCC 3 cut(s) 227, 1101, 1138
BspCNI CTCAG 7 cut(s) 85, 228, 451, 571, 757, 898, 1408
BspFNI CGCG 2 cut(s) 184, 1046
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 250, 353, 842
BspPI GGATC 4 cut(s) 399, 515, 905, 1257
BspQI GCTCTTC 2 cut(s) 138, 526
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 1057
BsrI ACTGG 5 cut(s) 505, 604, 844, 965, 1169
BssAI RCCGGY 1 cut(s) 1057
BssECI CCNNGG 1 cut(s) 1425
BssMI GATC 6 cut(s) 37, 391, 400, 507, 910, 1249
BssSI CACGAG 1 cut(s) 1185
Bst2BI CACGAG 1 cut(s) 1185
Bst2UI CCWGG 3 cut(s) 711, 783, 1098
Bst4CI ACNGT 4 cut(s) 119, 556, 790, 1305
Bst6I CTCTTC 6 cut(s) 138, 426, 526, 554, 981, 1305
BstC8I GCNNGC 1 cut(s) 1269
BstDEI CTNAG 8 cut(s) 72, 215, 459, 579, 765, 885, 915, 1395
BstDSI CCRYGG 1 cut(s) 1425
BstF5I GGATG 7 cut(s) 362, 403, 668, 980, 1213, 1409, 1414
BstFNI CGCG 2 cut(s) 184, 1046
BstKTI GATC 6 cut(s) 40, 394, 403, 510, 913, 1252
BstMAI GTCTC 3 cut(s) 73, 198, 1195
BstMBI GATC 6 cut(s) 37, 391, 400, 507, 910, 1249
BstMWI GCNNNNNNNGC 2 cut(s) 48, 633
BstNI CCWGG 3 cut(s) 711, 783, 1098
BstNSI RCATGY 1 cut(s) 1271
BstPAI GACNNNNGTC 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 709, 781, 1096
BstSFI CTRYAG 1 cut(s) 870
BstUI CGCG 2 cut(s) 184, 1046
BstV1I GCAGC 1 cut(s) 543
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 910
BstYI RGATCY 1 cut(s) 910
BsuRI GGCC 3 cut(s) 227, 1101, 1138
BtgI CCRYGG 1 cut(s) 1425
BtsCI GGATG 7 cut(s) 362, 403, 668, 980, 1213, 1409, 1414
BtsIMutI CAGTG 6 cut(s) 561, 611, 864, 893, 1162, 1301
Cac8I GCNNGC 1 cut(s) 1269
CaiI CAGNNNCTG 1 cut(s) 788
CciI TCATGA 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 1057
Cfr13I GGNCC 2 cut(s) 452, 840
Csp6I GTAC 4 cut(s) 249, 424, 543, 896
CspCI CAANNNNNGTGG 2 cut(s) 1261, 1296
CviAII CATG 4 cut(s) 314, 348, 1268, 1339
CviQI GTAC 4 cut(s) 249, 424, 543, 896
DdeI CTNAG 8 cut(s) 72, 215, 459, 579, 765, 885, 915, 1395
DpnI GATC 6 cut(s) 39, 393, 402, 509, 912, 1251
DpnII GATC 6 cut(s) 37, 391, 400, 507, 910, 1249
DriI GACNNNNNGTC 1 cut(s) 1019
EaeI YGGCCR 1 cut(s) 1099
Eam1104I CTCTTC 6 cut(s) 138, 426, 526, 554, 981, 1305
Eam1105I GACNNNNNGTC 1 cut(s) 1019
EarI CTCTTC 6 cut(s) 138, 426, 526, 554, 981, 1305
Ecl136II GAGCTC 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 1138
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 452, 840
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 3 cut(s) 162, 362, 1073
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 2 cut(s) 452, 840
EcoRI GAATTC 1 cut(s) 482
EcoRII CCWGG 3 cut(s) 709, 781, 1096
EcoT38I GRGCYC 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 4 cut(s) 317, 351, 1271, 1342
FaqI GGGAC 2 cut(s) 41, 826
FatI CATG 4 cut(s) 313, 347, 1267, 1338
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 2 cut(s) 7, 532
FokI GGATG 7 cut(s) 349, 390, 655, 967, 1220, 1396, 1401
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 7, 532
FspBI CTAG 1 cut(s) 471
GluI GCNGC 2 cut(s) 7, 532
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 4 cut(s) 546, 579, 640, 693
HaeIII GGCC 3 cut(s) 227, 1101, 1138
HapII CCGG 3 cut(s) 574, 685, 1058
Hin1II CATG 4 cut(s) 317, 351, 1271, 1342
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 7 cut(s) 323, 548, 562, 834, 947, 1031, 1218
HpaII CCGG 3 cut(s) 574, 685, 1058
HphI GGTGA 5 cut(s) 53, 297, 947, 1185, 1270
Hpy166II GTNNAC 2 cut(s) 874, 1132
Hpy188I TCNGA 9 cut(s) 328, 460, 673, 766, 985, 1254, 1309, 1419, 1439
Hpy188III TCNNGA 9 cut(s) 26, 217, 314, 525, 596, 657, 806, 1011, 1067
Hpy8I GTNNAC 2 cut(s) 874, 1132
Hpy99I CGWCG 1 cut(s) 1367
HpyAV CCTTC 5 cut(s) 146, 465, 744, 819, 1249
HpyCH4III ACNGT 4 cut(s) 119, 556, 790, 1305
HpyCH4IV ACGT 1 cut(s) 1406
HpyCH4V TGCA 6 cut(s) 609, 775, 800, 862, 971, 1402
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 633
HpyF3I CTNAG 8 cut(s) 72, 215, 459, 579, 765, 885, 915, 1395
HpySE526I ACGT 1 cut(s) 1406
Hsp92II CATG 4 cut(s) 317, 351, 1271, 1342
KpnI GGTACC 1 cut(s) 252
Kzo9I GATC 6 cut(s) 37, 391, 400, 507, 910, 1249
LguI GCTCTTC 2 cut(s) 138, 526
LmnI GCTCC 3 cut(s) 211, 357, 612
Lsp1109I GCAGC 1 cut(s) 543
LweI GCATC 2 cut(s) 762, 888
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 1406
MaeIII GTNAC 4 cut(s) 83, 918, 1060, 1379
MalI GATC 6 cut(s) 39, 393, 402, 509, 912, 1251
MbiI CCGCTC 1 cut(s) 51
MboI GATC 6 cut(s) 37, 391, 400, 507, 910, 1249
MflI RGATCY 1 cut(s) 910
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 1101
MluCI AATT 7 cut(s) 201, 273, 338, 482, 649, 676, 1225
MluNI TGGCCA 1 cut(s) 1101
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 3 cut(s) 369, 770, 1272
Mox20I TGGCCA 1 cut(s) 1101
MroXI GAANNNNTTC 2 cut(s) 445, 813
MscI TGGCCA 1 cut(s) 1101
MseI TTAA 3 cut(s) 237, 296, 954
MslI CAYNNNNRTG 4 cut(s) 933, 1167, 1185, 1198
Msp20I TGGCCA 1 cut(s) 1101
MspA1I CMGCKG 3 cut(s) 140, 269, 534
MspI CCGG 3 cut(s) 574, 685, 1058
MspR9I CCNGG 3 cut(s) 711, 783, 1098
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 3 cut(s) 711, 783, 1098
MvnI CGCG 2 cut(s) 184, 1046
MwoI GCNNNNNNNGC 2 cut(s) 48, 633
NdeII GATC 6 cut(s) 37, 391, 400, 507, 910, 1249
NlaIII CATG 4 cut(s) 317, 351, 1271, 1342
NlaIV GGNNCC 3 cut(s) 250, 353, 842
NmuCI GTSAC 2 cut(s) 918, 1379
NspI RCATGY 1 cut(s) 1271
OliI CACNNNNGTG 1 cut(s) 1198
PaeI GCATGC 1 cut(s) 1271
PagI TCATGA 1 cut(s) 313
PceI AGGCCT 1 cut(s) 1138
PciSI GCTCTTC 2 cut(s) 138, 526
PcsI WCGNNNNNNNCGW 1 cut(s) 1368
PctI GAATGC 1 cut(s) 638
PdmI GAANNNNTTC 2 cut(s) 445, 813
PfeI GAWTC 6 cut(s) 323, 548, 834, 947, 1031, 1218
PflMI CCANNNNNTGG 1 cut(s) 1203
PfoI TCCNGGA 1 cut(s) 709
PkrI GCNGC 2 cut(s) 8, 533
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
PpuMI RGGWCCY 2 cut(s) 452, 840
PshAI GACNNNNGTC 1 cut(s) 98
PsiI TTATAA 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 2 cut(s) 452, 840
Psp6I CCWGG 3 cut(s) 709, 781, 1096
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 3 cut(s) 709, 781, 1096
PspN4I GGNNCC 3 cut(s) 250, 353, 842
PspPI GGNCC 2 cut(s) 452, 840
PspPPI RGGWCCY 2 cut(s) 452, 840
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 1 cut(s) 910
PvuII CAGCTG 2 cut(s) 140, 269
RsaI GTAC 4 cut(s) 250, 425, 544, 897
RsaNI GTAC 4 cut(s) 249, 424, 543, 896
RseI CAYNNNNRTG 4 cut(s) 933, 1167, 1185, 1198
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 2 cut(s) 138, 526
SaqAI TTAA 3 cut(s) 237, 296, 954
SatI GCNGC 2 cut(s) 7, 532
Sau3AI GATC 6 cut(s) 37, 391, 400, 507, 910, 1249
Sau96I GGNCC 2 cut(s) 452, 840
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 3 cut(s) 711, 783, 1098
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 2 cut(s) 762, 888
SfcI CTRYAG 1 cut(s) 870
SinI GGWCC 2 cut(s) 452, 840
SmiMI CAYNNNNRTG 4 cut(s) 933, 1167, 1185, 1198
SmlI CTYRAG 1 cut(s) 1065
SmoI CTYRAG 1 cut(s) 1065
SphI GCATGC 1 cut(s) 1271
Sse9I AATT 7 cut(s) 201, 273, 338, 482, 649, 676, 1225
SseBI AGGCCT 1 cut(s) 1138
SsiI CCGC 5 cut(s) 49, 182, 257, 534, 1044
SspI AATATT 1 cut(s) 586
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 216
StuI AGGCCT 1 cut(s) 1138
StyD4I CCNGG 3 cut(s) 709, 781, 1096
TaaI ACNGT 4 cut(s) 119, 556, 790, 1305
TaiI ACGT 1 cut(s) 1409
TaqI TCGA 2 cut(s) 807, 1362
TasI AATT 7 cut(s) 201, 273, 338, 482, 649, 676, 1225
TatI WGTACW 2 cut(s) 423, 895
TfiI GAWTC 6 cut(s) 323, 548, 834, 947, 1031, 1218
Tru1I TTAA 3 cut(s) 237, 296, 954
Tru9I TTAA 3 cut(s) 237, 296, 954
TscAI CASTG 6 cut(s) 561, 611, 864, 893, 1169, 1308
TseFI GTSAC 2 cut(s) 918, 1379
TseI GCWGC 2 cut(s) 6, 531
Tsp45I GTSAC 2 cut(s) 918, 1379
TspDTI ATGAA 8 cut(s) 434, 444, 657, 1185, 1191, 1309, 1389, 1422
TspGWI ACGGA 3 cut(s) 110, 1230, 1414
TspRI CASTG 6 cut(s) 561, 611, 864, 893, 1169, 1308
Van91I CCANNNNNTGG 1 cut(s) 1203
VpaK11BI GGWCC 2 cut(s) 452, 840
XapI RAATTY 5 cut(s) 273, 338, 482, 649, 1225
XceI RCATGY 1 cut(s) 1271
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 873
XmnI GAANNNNTTC 2 cut(s) 445, 813
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.