pycom09g06740

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
4983975 .. 4987726
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06740.3

Sequence Viewer

Length: 1833 bp
ATGTATCCAAGCGAGTACATTGTACCTCGCACTCGATCGAGTACCTTCACACCCAAAACGCACCCCGTCTGGCGAGGCGTATCCGTTTCCCTCGTTTTGTTTGTTCAAAATTCAAAAACGACCCATCAACTCCAATTCGTCTCCTTCTCTCCCTCTCTCTCTATCTCTCTCTCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGAATCAATAATTCACCTAAAAAAGAAAAACCAAGAACAAGCTAGGGTTTTGGATTCTCCCTTTTTTTTCCCCATTTATTTTACGAAATCGATGTTATGCTCGCTGTTGAAGCGCGGAATAGGGCATCTGTGCAGATACGCGTTGAGGTTTCTTGACAGGTCGATTTCGCGAGTAATGGGCTGCTTCTTCGGTTGCTTTCGGGTCAAGGACGATCGCCACCTTCGCTCTCGGCCTCACCTTGTTTCTCAGTCCTCTCGTAACCCCCAGACGGAAGTTGTGATATCTCGAAACCGTTTGTCTTCTCTATTTTCAGCTGAAGAGAAAGAAGGTTCTCCAATCAAAGATAGGGAAAGTGCTTCTTATGTGTCTCCACAAATTGACAAGGAGCTCAGGAATGAGGCCAAGTTTCTTAAAGCTTGTGGCACCATAGCCGAAACACCAGCTGAAATTCGTAAAGTGTCTTCAAGGTTGAATGGCTCACCCCATCATGATAGAGATTCAGAGCCTCCAAAATTCAACTCACAGCTTCCAAACACATCCATTAAAAATTTTCAGCAAGAGTTGGATCAACCAGATCAGCCCCCTACGCCTTTGAAGTTCAATGAAGAGTGGGGAAAGGGTTTAGGTCCTTCTCAGCATACGCCTAGCAGTTTTGTATCGAACCAACAGAATAATGGTAGGACCACAATCAGCTCTTCTGGAGGCAGCGGAATAGGTACTGATTCAACAGTCAAGAGTCATACTAATCGGACTGAGAATATTACAACTCCAGATGTCCAGTTCAGGAGCAAGGCTGTTCGCTTTGATTGCAATAATGATACAAATTCCTCCAGAGGTTCTTCATCCGAAAATTATAACCAGAGTTCAAAAGTATGTGAAACTCCAGGAAAACAGAGCATATCAAAGCCTTCAGTTTATCCAACCCCACTAACCCTTTCTGATGAGATGCAGACACCAGGAACCGTTTTCCCTGCAAACCTGGAAAACTTTCCAAATGGAAAGGCTCGAATCAGGTCCCAGTACGTGTATTCAGTGCAAAACCCTGGAGACGGCATCTCTCAACAGAATGTACTGAAAGACGAAGATCCTAACTCACATGGATTTTCTGTTGAGCAAAGAGAATCTCTTAACCACTGGGGAAATGCAACTCCTATATCAAAAGAGGGGGTGAAACAAATTTCATCTGGACAAGAGGTCAATGTGGAATCAAGTTTGTCCACCTGGTTGAAGCCAGTAACTCAAGATAACAACAATCAGTTTGGTTATGTTCCCAGCCAAACTCGTCATTTTGGAAGAACTCCTGGGGACAGGCCTATCATTGGGCTTGTTGCTACTCACTGGAACGAAGATAAGCCTACTCGTGTCTCACCCAAGTGGTGGGATGGGAACGGAATCCCAAACTCAACAAATAAATACAAGGAGGATCAGAAAGTGAGTTGGCACGCAACTCCATTTGAAGAAAGATTGGAAAAGGCATTGTCCGAAGAGAGTTTCATCTCTCAGAGAAAAAATATTGAGGGGAAGCCGATTGTTTTTGACGAGAATGATGAGAGCGATACAGCCCTTTCTCAGTTGCAATCTTCATCGCAGCCGAAATCAGTGGTTTCGTTCTGA

Protein Analysis

611

Amino Acids

68.24

Weight (kDa)

9.01

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1074
AccB1I GGYRCC 1 cut(s) 641
AccB7I CCANNNNNTGG 1 cut(s) 1596
AccII CGCG 3 cut(s) 333, 359, 388
AciI CCGC 2 cut(s) 333, 927
AclWI GGATC 3 cut(s) 792, 1298, 1650
AcsI RAATTY 6 cut(s) 109, 666, 731, 766, 1042, 1395
AcuI CTGAAG 2 cut(s) 555, 1113
AfaI GTAC 6 cut(s) 17, 24, 43, 937, 1241, 1290
AfiI CCNNNNNNNGG 4 cut(s) 487, 1268, 1538, 1596
AflIII ACRYGT 2 cut(s) 357, 1242
AhdI GACNNNNNGTC 1 cut(s) 1412
AjnI CCWGG 6 cut(s) 1102, 1174, 1197, 1261, 1439, 1519
AleI CACNNNNGTG 1 cut(s) 1591
AluBI AGCT 7 cut(s) 260, 533, 607, 635, 662, 745, 912
AluI AGCT 7 cut(s) 260, 533, 607, 635, 662, 745, 912
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 4 cut(s) 145, 591, 1260, 1588
AlwI GGATC 3 cut(s) 792, 1298, 1650
AoxI GGCC 3 cut(s) 449, 618, 1529
ApeKI GCWGC 3 cut(s) 399, 924, 1807
ApoI RAATTY 6 cut(s) 109, 666, 731, 766, 1042, 1395
Asp700I GAANNNNTTC 1 cut(s) 1206
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 3 cut(s) 845, 900, 1233
AsuHPI GGTGA 5 cut(s) 224, 446, 690, 1399, 1578
AvaII GGWCC 3 cut(s) 845, 900, 1233
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 1 cut(s) 609
BarI GAAGNNNNNNTAC 2 cut(s) 664, 696
BauI CACGAG 1 cut(s) 1578
BbsI GAAGAC 2 cut(s) 510, 672
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 3 cut(s) 386, 936, 1819
BccI CCATC 3 cut(s) 132, 711, 1595
BceAI ACGGC 1 cut(s) 1285
BciT130I CCWGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
BciVI GTATCC 2 cut(s) 15, 91
BcoDI GTCTC 4 cut(s) 145, 591, 1260, 1588
BfaI CTAG 2 cut(s) 261, 864
BfuI GTATCC 2 cut(s) 15, 91
BisI GCNGC 3 cut(s) 400, 925, 1808
BlsI GCNGC 3 cut(s) 401, 926, 1809
Bme1390I CCNGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
Bme18I GGWCC 3 cut(s) 845, 900, 1233
BmeRI GACNNNNNGTC 1 cut(s) 1412
BmgT120I GGNCC 3 cut(s) 845, 900, 1233
BmiI GGNNCC 3 cut(s) 643, 1180, 1235
BmrFI CCNGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
BmrI ACTGGG 2 cut(s) 1231, 1363
BmsI GCATC 3 cut(s) 352, 1155, 1281
BmuI ACTGGG 2 cut(s) 1231, 1363
BpiI GAAGAC 2 cut(s) 510, 672
BpmI CTGGAG 5 cut(s) 939, 972, 1033, 1086, 1284
Bpu10I CCTNAGC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 1443
Bsa29I ATCGAT 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 1243
BsaJI CCNNGG 2 cut(s) 1261, 1520
Bsc4I CCNNNNNNNGG 4 cut(s) 487, 1268, 1538, 1596
Bse1I ACTGG 5 cut(s) 997, 1237, 1358, 1451, 1562
BseBI CCWGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
BseCI ATCGAT 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 1261, 1520
BseGI GGATG 3 cut(s) 755, 1061, 1606
BseLI CCNNNNNNNGG 4 cut(s) 487, 1268, 1538, 1596
BseMII CTCAG 6 cut(s) 479, 622, 866, 963, 1733, 1802
BseNI ACTGG 5 cut(s) 997, 1237, 1358, 1451, 1562
BseXI GCAGC 3 cut(s) 386, 936, 1819
BseYI CCCAGC 1 cut(s) 1490
BsgI GTGCAG 1 cut(s) 370
Bsh1236I CGCG 3 cut(s) 333, 359, 388
Bsh1285I CGRYCG 2 cut(s) 38, 433
BshFI GGCC 3 cut(s) 451, 620, 1531
BshNI GGYRCC 1 cut(s) 641
BshVI ATCGAT 1 cut(s) 308
BsiEI CGRYCG 2 cut(s) 38, 433
BsiHKAI GWGCWC 1 cut(s) 609
BslFI GGGAC 2 cut(s) 1219, 1538
BslI CCNNNNNNNGG 4 cut(s) 487, 1268, 1538, 1596
BsmAI GTCTC 4 cut(s) 145, 591, 1260, 1588
BsmBI CGTCTC 2 cut(s) 145, 1260
BsmFI GGGAC 2 cut(s) 1219, 1538
BsnI GGCC 3 cut(s) 451, 620, 1531
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 6 cut(s) 35, 430, 784, 793, 1303, 1642
Bsp68I TCGCGA 1 cut(s) 388
BspACI CCGC 2 cut(s) 333, 927
BspANI GGCC 3 cut(s) 451, 620, 1531
BspCNI CTCAG 6 cut(s) 478, 621, 865, 964, 1732, 1801
BspDI ATCGAT 1 cut(s) 308
BspFNI CGCG 3 cut(s) 333, 359, 388
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 643, 1180, 1235
BspPI GGATC 3 cut(s) 792, 1298, 1650
BspQI GCTCTTC 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 641
BsrI ACTGG 5 cut(s) 997, 1237, 1358, 1451, 1562
BssECI CCNNGG 2 cut(s) 1261, 1520
BssMI GATC 6 cut(s) 35, 430, 784, 793, 1303, 1642
BssSI CACGAG 1 cut(s) 1578
Bst2BI CACGAG 1 cut(s) 1578
Bst2UI CCWGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
Bst4CI ACNGT 3 cut(s) 512, 949, 1183
Bst6I CTCTTC 4 cut(s) 531, 819, 919, 1698
BstBAI YACGTR 1 cut(s) 1243
BstC8I GCNNGC 2 cut(s) 320, 1662
BstDEI CTNAG 6 cut(s) 465, 608, 852, 972, 1719, 1788
BstF5I GGATG 3 cut(s) 755, 1061, 1606
BstFNI CGCG 3 cut(s) 333, 359, 388
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 6 cut(s) 38, 433, 787, 796, 1306, 1645
BstMAI GTCTC 4 cut(s) 145, 591, 1260, 1588
BstMBI GATC 6 cut(s) 35, 430, 784, 793, 1303, 1642
BstMCI CGRYCG 2 cut(s) 38, 433
BstMWI GCNNNNNNNGC 4 cut(s) 328, 441, 805, 1026
BstNI CCWGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
BstSCI CCNGG 6 cut(s) 1102, 1174, 1197, 1261, 1439, 1519
BstUI CGCG 3 cut(s) 333, 359, 388
BstV1I GCAGC 3 cut(s) 386, 936, 1819
BstV2I GAAGAC 2 cut(s) 510, 672
BstX2I RGATCY 1 cut(s) 1303
BstYI RGATCY 1 cut(s) 1303
Bsu15I ATCGAT 1 cut(s) 308
BsuI GTATCC 2 cut(s) 15, 91
BsuRI GGCC 3 cut(s) 451, 620, 1531
BsuTUI ATCGAT 1 cut(s) 308
BtgZI GCGATG 1 cut(s) 1788
BtsCI GGATG 3 cut(s) 755, 1061, 1606
BtsIMutI CAGTG 4 cut(s) 1257, 1351, 1555, 1824
BtuMI TCGCGA 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 320, 1662
CciI TCATGA 1 cut(s) 706
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 3 cut(s) 845, 900, 1233
ClaI ATCGAT 1 cut(s) 308
CsiI ACCWGGT 1 cut(s) 1439
Csp6I GTAC 6 cut(s) 16, 23, 42, 936, 1240, 1289
CviAII CATG 2 cut(s) 707, 1316
CviQI GTAC 6 cut(s) 16, 23, 42, 936, 1240, 1289
DdeI CTNAG 6 cut(s) 465, 608, 852, 972, 1719, 1788
DpnI GATC 6 cut(s) 37, 432, 786, 795, 1305, 1644
DpnII GATC 6 cut(s) 35, 430, 784, 793, 1303, 1642
DriI GACNNNNNGTC 1 cut(s) 1412
Eam1104I CTCTTC 4 cut(s) 531, 819, 919, 1698
Eam1105I GACNNNNNGTC 1 cut(s) 1412
EarI CTCTTC 4 cut(s) 531, 819, 919, 1698
Ecl136II GAGCTC 1 cut(s) 607
Eco147I AGGCCT 1 cut(s) 1531
Eco24I GRGCYC 1 cut(s) 609
Eco32I GATATC 1 cut(s) 501
Eco47I GGWCC 3 cut(s) 845, 900, 1233
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 2 cut(s) 555, 1113
EcoICRI GAGCTC 1 cut(s) 607
EcoO109I RGGNCCY 2 cut(s) 845, 1233
EcoRII CCWGG 6 cut(s) 1102, 1174, 1197, 1261, 1439, 1519
EcoRV GATATC 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 609
Esp3I CGTCTC 2 cut(s) 145, 1260
FaeI CATG 2 cut(s) 710, 1319
FalI AAGNNNNNCTT 2 cut(s) 562, 594
FaqI GGGAC 2 cut(s) 1219, 1538
FatI CATG 2 cut(s) 706, 1315
Fnu4HI GCNGC 3 cut(s) 400, 925, 1808
FokI GGATG 3 cut(s) 742, 1048, 1613
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 3 cut(s) 400, 925, 1808
FspBI CTAG 2 cut(s) 261, 864
GlaI GCGC 1 cut(s) 332
GluI GCNGC 3 cut(s) 400, 925, 1808
GsaI CCCAGC 1 cut(s) 1494
GsuI CTGGAG 5 cut(s) 939, 972, 1033, 1086, 1284
HaeIII GGCC 3 cut(s) 451, 620, 1531
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 710, 1319
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 9 cut(s) 221, 272, 716, 941, 955, 1227, 1340, 1424, 1611
HphI GGTGA 5 cut(s) 224, 446, 690, 1399, 1578
Hpy166II GTNNAC 1 cut(s) 1437
Hpy188I TCNGA 8 cut(s) 721, 969, 1066, 1159, 1647, 1702, 1722, 1832
Hpy8I GTNNAC 1 cut(s) 1437
HpyAV CCTTC 6 cut(s) 55, 154, 449, 539, 858, 1137
HpyCH4III ACNGT 3 cut(s) 512, 949, 1183
HpyCH4IV ACGT 1 cut(s) 1242
HpyCH4V TGCA 7 cut(s) 351, 1029, 1168, 1193, 1255, 1364, 1795
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 441, 805, 1026
HpyF3I CTNAG 6 cut(s) 465, 608, 852, 972, 1719, 1788
HpySE526I ACGT 1 cut(s) 1242
Hsp92II CATG 2 cut(s) 710, 1319
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 6 cut(s) 35, 430, 784, 793, 1303, 1642
LguI GCTCTTC 1 cut(s) 919
LmnI GCTCC 2 cut(s) 604, 1005
Lsp1109I GCAGC 3 cut(s) 386, 936, 1819
LweI GCATC 3 cut(s) 352, 1155, 1281
MabI ACCWGGT 1 cut(s) 1439
MaeI CTAG 2 cut(s) 261, 864
MaeII ACGT 1 cut(s) 1242
MaeIII GTNAC 2 cut(s) 476, 1453
MalI GATC 6 cut(s) 37, 432, 786, 795, 1305, 1644
MboI GATC 6 cut(s) 35, 430, 784, 793, 1303, 1642
MflI RGATCY 1 cut(s) 1303
MhlI GDGCHC 1 cut(s) 609
MluI ACGCGT 1 cut(s) 357
MlyI GAGTC 1 cut(s) 964
MmeI TCCRAC 2 cut(s) 762, 1163
MroXI GAANNNNTTC 1 cut(s) 1206
MseI TTAA 3 cut(s) 630, 762, 1347
MslI CAYNNNNRTG 1 cut(s) 1591
MspA1I CMGCKG 3 cut(s) 533, 662, 927
MspR9I CCNGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
MvaI CCWGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
MvnI CGCG 3 cut(s) 333, 359, 388
MwoI GCNNNNNNNGC 4 cut(s) 328, 441, 805, 1026
NdeII GATC 6 cut(s) 35, 430, 784, 793, 1303, 1642
NlaIII CATG 2 cut(s) 710, 1319
NlaIV GGNNCC 3 cut(s) 643, 1180, 1235
NmeAIII GCCGAG 1 cut(s) 427
NruI TCGCGA 1 cut(s) 388
OliI CACNNNNGTG 1 cut(s) 1591
PagI TCATGA 1 cut(s) 706
PceI AGGCCT 1 cut(s) 1531
PciSI GCTCTTC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 1206
PfeI GAWTC 8 cut(s) 221, 272, 716, 941, 1227, 1340, 1424, 1611
PflMI CCANNNNNTGG 1 cut(s) 1596
PfoI TCCNGGA 1 cut(s) 1102
PkrI GCNGC 3 cut(s) 401, 926, 1809
Ple19I CGATCG 2 cut(s) 38, 433
PleI GAGTC 1 cut(s) 963
PpsI GAGTC 1 cut(s) 963
Ppu21I YACGTR 1 cut(s) 1243
PpuMI RGGWCCY 2 cut(s) 845, 1233
PsiI TTATAA 1 cut(s) 1074
Psp124BI GAGCTC 1 cut(s) 609
Psp5II RGGWCCY 2 cut(s) 845, 1233
Psp6I CCWGG 6 cut(s) 1102, 1174, 1197, 1261, 1439, 1519
PspFI CCCAGC 1 cut(s) 1490
PspGI CCWGG 6 cut(s) 1102, 1174, 1197, 1261, 1439, 1519
PspN4I GGNNCC 3 cut(s) 643, 1180, 1235
PspPI GGNCC 3 cut(s) 845, 900, 1233
PspPPI RGGWCCY 2 cut(s) 845, 1233
PsuI RGATCY 1 cut(s) 1303
PvuI CGATCG 2 cut(s) 38, 433
PvuII CAGCTG 2 cut(s) 533, 662
RruI TCGCGA 1 cut(s) 388
RsaI GTAC 6 cut(s) 17, 24, 43, 937, 1241, 1290
RsaNI GTAC 6 cut(s) 16, 23, 42, 936, 1240, 1289
RseI CAYNNNNRTG 1 cut(s) 1591
SacI GAGCTC 1 cut(s) 609
SapI GCTCTTC 1 cut(s) 919
SaqAI TTAA 3 cut(s) 630, 762, 1347
SatI GCNGC 3 cut(s) 400, 925, 1808
Sau3AI GATC 6 cut(s) 35, 430, 784, 793, 1303, 1642
Sau96I GGNCC 3 cut(s) 845, 900, 1233
SchI GAGTC 1 cut(s) 964
ScrFI CCNGG 6 cut(s) 1104, 1176, 1199, 1263, 1441, 1521
SduI GDGCHC 1 cut(s) 609
SexAI ACCWGGT 1 cut(s) 1439
SfaNI GCATC 3 cut(s) 352, 1155, 1281
SinI GGWCC 3 cut(s) 845, 900, 1233
SmiMI CAYNNNNRTG 1 cut(s) 1591
SmlI CTYRAG 1 cut(s) 1458
SmoI CTYRAG 1 cut(s) 1458
SseBI AGGCCT 1 cut(s) 1531
SsiI CCGC 2 cut(s) 333, 927
SspI AATATT 2 cut(s) 979, 1732
SspMI CTAG 2 cut(s) 261, 864
SstI GAGCTC 1 cut(s) 609
StuI AGGCCT 1 cut(s) 1531
StyD4I CCNGG 6 cut(s) 1102, 1174, 1197, 1261, 1439, 1519
TaaI ACNGT 3 cut(s) 512, 949, 1183
TaiI ACGT 1 cut(s) 1245
TaqI TCGA 7 cut(s) 34, 38, 308, 380, 505, 878, 1225
TatI WGTACW 2 cut(s) 15, 1288
TfiI GAWTC 8 cut(s) 221, 272, 716, 941, 1227, 1340, 1424, 1611
Tru1I TTAA 3 cut(s) 630, 762, 1347
Tru9I TTAA 3 cut(s) 630, 762, 1347
TscAI CASTG 4 cut(s) 1257, 1358, 1562, 1824
TseI GCWGC 3 cut(s) 399, 924, 1807
TspDTI ATGAA 5 cut(s) 837, 1050, 1389, 1702, 1791
TspGWI ACGGA 3 cut(s) 73, 503, 1623
TspRI CASTG 4 cut(s) 1257, 1358, 1562, 1824
Van91I CCANNNNNTGG 1 cut(s) 1596
VpaK11BI GGWCC 3 cut(s) 845, 900, 1233
XapI RAATTY 6 cut(s) 109, 666, 731, 766, 1042, 1395
XcmI CCANNNNNNNNNTGG 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 2 cut(s) 261, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.