Rh2AG493900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
71534674 .. 71538799
4126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG493900.1

Sequence Viewer

Length: 1524 bp
ATGTTATGCTTCAATCGTGAATTAGGGTTTGTGTGCAGATCGGTGTTGAGGTTTCTTGACAGATCGGTTGCCGGAGCTATGGGTTGCTTCTTCGGTTGCTTCAGAGTCAGGGACGATCGCCATCTCCGCTCTCGGCCTCACCTCGTTTCTCAGCCCTCGCGCTCGGGAGCTGTGGCGTCTCAGAATCGTTTGTCATCTCTATTTTTAGCTGAAGAGAGAGGAGATTCTCCAGCCAGAGATCGGGAAAGCCCTAGTTATGGGACTCCACAAATTGACAAGGAGCTCAAGAACGAGGCCAAATTTCTTAAGGCTTGTGGTACTATAGTTGAGACCCCAGTTGAAATTCGGAAAGCTTCAAAGTTAATTGGCTCACCCCATCATGATAGAGATTCAGAGCCCTCAAAATTCAACTCATGGCTTCCCAACACATCCATTAAAAAGCTTCAGCAGGAGAATCAACCAGAGCAGCCTCCTACACCTGTTAAACTTTTTGAAGAGTGGGGAAAGGGGTCAGAGCATACACCTATCAGTTATGAGACAAACCAACAGGGTACTGGAAGAAGCTCTCTCAGCTCTACTGAAGGTAGTGGACTAGGTACTGATTCATCAGTAAAGATTCATTCTAATCGGGCTGAGAACACTGTAACTCTAACTTCACCTTTGCACTCAGCCACAGATGTCCAGTGCAGGGGCAAGTCTGTTCGCTTTGAATGTGATTTTGATACAGCATCCTCAAAAGGTTCTTCATCTGGTAACTGTAGCAGGAGTGCAAAAATAGCTGAAACTCCAGGAAAACAGGGCACATCAAAGTATTCAGATTATCCAACCCCCCTGACTCTTTCTGACGAGATGCAGACACCTGGAACAGTTTACCCATCAAGCCAGAGAACTTTTCCTAATGGAAAGTCTCGAATCAGGTCCCAGTATGTGTATTCAGTTCCAAACCCTGAGGGCATCTCTCGGTGGAATGTGCTGACAGAGGAAGATTCTAACTCACATGGGTTTTCAGGTGAGCCTAGTGAGTCTCTCAAACAATCCGGAAATGCAACCCCCATATCAGAAGAGGGGCAAAAAGAAATTTCATCTGGAAAAGACTTACAGGCGGAATCAAGTATGTCCTCCTGGCAGAAGCCAGTGAAATCTACTCAAGATGACAACAATCTGAAGTTGGGAGACGCTTCTGGCAGAAATCGTTATTTTGGCAGAACTCCTGGGGACAGGCCTATAATTGGGTTGGTTGCTACTCACTGGAATGAAGATGACGCTACTCGTATCTCCCCCAAGTGGTGGGACGGGAAGGGAATCCCAAATTCAACCAATAAATACAAAGAGGATCAGAAAGTGAGTTGGCATGCAACACCGTTTGAGGAGAGGTTGGAGAAGGCATTGTCTGAAGAAAGTTTCATTTCTCAGAGAAAAAACATAGGGGGAATGCCCATTGTGTTCGATGAGAACGAAGAAAGTGATACTGCTCTTTCTCAGTTGCAATCTTCATCCCAGCCAAAGTCAGTGGTTTCATTCTGA

Protein Analysis

507

Amino Acids

55.99

Weight (kDa)

6.82

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1287
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 1037
AciI CCGC 2 cut(s) 127, 1103
AclWI GGATC 1 cut(s) 1341
AcsI RAATTY 5 cut(s) 299, 342, 404, 1077, 1309
AcuI CTGAAG 6 cut(s) 85, 231, 428, 600, 1184, 1413
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 3 cut(s) 319, 553, 598
AfiI CCNNNNNNNGG 6 cut(s) 240, 257, 688, 1229, 1284, 1287
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 7 cut(s) 13, 341, 357, 409, 494, 710, 1314
AjnI CCWGG 4 cut(s) 787, 859, 1121, 1210
AluBI AGCT 9 cut(s) 77, 170, 209, 283, 353, 442, 564, 573, 779
AluI AGCT 9 cut(s) 77, 170, 209, 283, 353, 442, 564, 573, 779
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 6 cut(s) 183, 323, 530, 912, 1029, 1167
AlwI GGATC 1 cut(s) 1341
Ama87I CYCGRG 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 1037
AoxI GGCC 3 cut(s) 134, 294, 1220
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 5 cut(s) 299, 342, 404, 1077, 1309
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 918
AsuHPI GGTGA 4 cut(s) 131, 363, 648, 1022
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 918
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 803
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BanII GRGCYC 2 cut(s) 285, 399
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 478
BccI CCATC 3 cut(s) 129, 384, 883
BciT130I CCWGG 4 cut(s) 789, 861, 1123, 1212
BcoDI GTCTC 6 cut(s) 183, 323, 530, 912, 1029, 1167
BfaI CTAG 3 cut(s) 252, 593, 1017
BfmI CTRYAG 2 cut(s) 321, 757
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
Bme1390I CCNGG 4 cut(s) 789, 861, 1123, 1212
Bme18I GGWCC 1 cut(s) 918
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 918
BmiI GGNNCC 1 cut(s) 920
BmrFI CCNGG 4 cut(s) 789, 861, 1123, 1212
BmrI ACTGGG 2 cut(s) 329, 916
BmsI GCATC 3 cut(s) 737, 840, 963
BmuI ACTGGG 2 cut(s) 329, 916
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpmI CTGGAG 2 cut(s) 213, 771
BpuEI CTTGAG 2 cut(s) 269, 1131
BsaBI GATNNNNATC 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 1211
BsaWI WCCGGW 1 cut(s) 1037
Bsc4I CCNNNNNNNGG 6 cut(s) 240, 257, 688, 1229, 1284, 1287
Bse1I ACTGG 6 cut(s) 335, 559, 682, 922, 1133, 1253
Bse21I CCTNAGG 1 cut(s) 948
Bse8I GATNNNNATC 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 1037
BseBI CCWGG 4 cut(s) 789, 861, 1123, 1212
BseDI CCNNGG 1 cut(s) 1211
BseGI GGATG 3 cut(s) 428, 728, 1493
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 6 cut(s) 240, 257, 688, 1229, 1284, 1287
BseMII CTCAG 8 cut(s) 164, 194, 583, 624, 681, 939, 1424, 1493
BseNI ACTGG 6 cut(s) 335, 559, 682, 922, 1133, 1253
BseRI GAGGAG 2 cut(s) 234, 1382
BseSI GKGCMC 1 cut(s) 803
BseXI GCAGC 1 cut(s) 478
BseYI CCCAGC 1 cut(s) 1497
BsgI GTGCAG 2 cut(s) 55, 706
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 3 cut(s) 136, 296, 1222
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 2 cut(s) 72, 1038
BslFI GGGAC 5 cut(s) 125, 274, 904, 1229, 1304
BslI CCNNNNNNNGG 6 cut(s) 240, 257, 688, 1229, 1284, 1287
BsmAI GTCTC 6 cut(s) 183, 323, 530, 912, 1029, 1167
BsmBI CGTCTC 2 cut(s) 183, 1167
BsmFI GGGAC 5 cut(s) 125, 274, 904, 1229, 1304
BsmI GAATGC 1 cut(s) 1437
BsnI GGCC 3 cut(s) 136, 296, 1222
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 3 cut(s) 285, 399, 803
Bsp13I TCCGGA 1 cut(s) 1037
Bsp143I GATC 5 cut(s) 38, 62, 115, 238, 1333
BspACI CCGC 2 cut(s) 127, 1103
BspANI GGCC 3 cut(s) 136, 296, 1222
BspCNI CTCAG 8 cut(s) 163, 193, 582, 625, 680, 940, 1423, 1492
BspEI TCCGGA 1 cut(s) 1037
BspFNI CGCG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 920
BspPI GGATC 1 cut(s) 1341
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 129
BsrI ACTGG 6 cut(s) 335, 559, 682, 922, 1133, 1253
BssECI CCNNGG 1 cut(s) 1211
BssMI GATC 5 cut(s) 38, 62, 115, 238, 1333
BssNI GRCGYC 1 cut(s) 176
Bst2UI CCWGG 4 cut(s) 789, 861, 1123, 1212
Bst4CI ACNGT 4 cut(s) 643, 758, 868, 1362
Bst6I CTCTTC 3 cut(s) 207, 489, 1056
BstACI GRCGYC 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 1353
BstDEI CTNAG 8 cut(s) 150, 180, 569, 633, 667, 948, 1410, 1479
BstF5I GGATG 3 cut(s) 428, 728, 1493
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 5 cut(s) 41, 65, 118, 241, 1336
BstMAI GTCTC 6 cut(s) 183, 323, 530, 912, 1029, 1167
BstMBI GATC 5 cut(s) 38, 62, 115, 238, 1333
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 126, 570, 776
BstNI CCWGG 4 cut(s) 789, 861, 1123, 1212
BstNSI RCATGY 1 cut(s) 1355
BstSCI CCNGG 4 cut(s) 787, 859, 1121, 1210
BstSFI CTRYAG 2 cut(s) 321, 757
BstSLI GKGCMC 1 cut(s) 803
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 3 cut(s) 136, 296, 1222
BtsCI GGATG 3 cut(s) 428, 728, 1493
BtsIMutI CAGTG 5 cut(s) 639, 689, 1140, 1246, 1515
Cac8I GCNNGC 1 cut(s) 1353
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 918
CseI GACGC 3 cut(s) 165, 1184, 1271
Csp6I GTAC 3 cut(s) 318, 552, 597
CspCI CAANNNNNGTGG 1 cut(s) 1491
CviAII CATG 4 cut(s) 380, 414, 998, 1352
CviQI GTAC 3 cut(s) 318, 552, 597
DdeI CTNAG 8 cut(s) 150, 180, 569, 633, 667, 948, 1410, 1479
DpnI GATC 5 cut(s) 40, 64, 117, 240, 1335
DpnII GATC 5 cut(s) 38, 62, 115, 238, 1333
Eam1104I CTCTTC 3 cut(s) 207, 489, 1056
EarI CTCTTC 3 cut(s) 207, 489, 1056
EciI GGCGGA 1 cut(s) 1118
Ecl136II GAGCTC 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 1222
Eco24I GRGCYC 2 cut(s) 285, 399
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 918
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 6 cut(s) 85, 231, 428, 600, 1184, 1413
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 918
EcoRII CCWGG 4 cut(s) 787, 859, 1121, 1210
EcoT38I GRGCYC 2 cut(s) 285, 399
Esp3I CGTCTC 2 cut(s) 183, 1167
FaeI CATG 4 cut(s) 383, 417, 1001, 1355
FaqI GGGAC 5 cut(s) 125, 274, 904, 1229, 1304
FatI CATG 4 cut(s) 379, 413, 997, 1351
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 3 cut(s) 415, 715, 1480
FriOI GRGCYC 2 cut(s) 285, 399
Fsp4HI GCNGC 1 cut(s) 467
FspBI CTAG 3 cut(s) 252, 593, 1017
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 467
GsaI CCCAGC 1 cut(s) 1501
GsuI CTGGAG 2 cut(s) 213, 771
HaeIII GGCC 3 cut(s) 136, 296, 1222
HapII CCGG 2 cut(s) 72, 1038
HgaI GACGC 3 cut(s) 165, 1184, 1271
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 4 cut(s) 383, 417, 1001, 1355
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 2 cut(s) 351, 440
HpaII CCGG 2 cut(s) 72, 1038
HphI GGTGA 4 cut(s) 131, 363, 648, 1022
Hpy166II GTNNAC 2 cut(s) 590, 871
Hpy8I GTNNAC 2 cut(s) 590, 871
HpyAV CCTTC 3 cut(s) 575, 1291, 1375
HpyCH4III ACNGT 4 cut(s) 643, 758, 868, 1362
HpyCH4V TGCA 8 cut(s) 36, 664, 687, 770, 853, 1046, 1355, 1486
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 570, 776
HpyF3I CTNAG 8 cut(s) 150, 180, 569, 633, 667, 948, 1410, 1479
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 4 cut(s) 383, 417, 1001, 1355
HspAI GCGC 1 cut(s) 160
Kpn2I TCCGGA 1 cut(s) 1037
Kzo9I GATC 5 cut(s) 38, 62, 115, 238, 1333
LmnI GCTCC 3 cut(s) 74, 167, 280
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 3 cut(s) 737, 840, 963
MaeI CTAG 3 cut(s) 252, 593, 1017
MaeIII GTNAC 2 cut(s) 643, 752
MalI GATC 5 cut(s) 40, 64, 117, 240, 1335
MbiI CCGCTC 1 cut(s) 129
MboI GATC 5 cut(s) 38, 62, 115, 238, 1333
MhlI GDGCHC 3 cut(s) 285, 399, 803
MluCI AATT 9 cut(s) 20, 270, 299, 342, 363, 404, 1077, 1227, 1309
MlyI GAGTC 4 cut(s) 114, 256, 829, 1031
MmeI TCCRAC 2 cut(s) 848, 1356
MroI TCCGGA 1 cut(s) 1037
MseI TTAA 4 cut(s) 306, 362, 435, 483
MslI CAYNNNNRTG 1 cut(s) 1251
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 2 cut(s) 72, 1038
MspR9I CCNGG 4 cut(s) 789, 861, 1123, 1212
Mva1269I GAATGC 1 cut(s) 1437
MvaI CCWGG 4 cut(s) 789, 861, 1123, 1212
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 126, 570, 776
NdeII GATC 5 cut(s) 38, 62, 115, 238, 1333
NlaIII CATG 4 cut(s) 383, 417, 1001, 1355
NlaIV GGNNCC 1 cut(s) 920
NmeAIII GCCGAG 1 cut(s) 112
NspI RCATGY 1 cut(s) 1355
PaeI GCATGC 1 cut(s) 1355
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 1 cut(s) 1222
PcsI WCGNNNNNNNCGW 1 cut(s) 1452
PctI GAATGC 1 cut(s) 1437
PflMI CCANNNNNTGG 1 cut(s) 1287
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 1 cut(s) 468
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 4 cut(s) 113, 256, 829, 1030
PpsI GAGTC 4 cut(s) 113, 256, 829, 1030
PpuMI RGGWCCY 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 918
Psp6I CCWGG 4 cut(s) 787, 859, 1121, 1210
PspFI CCCAGC 1 cut(s) 1497
PspGI CCWGG 4 cut(s) 787, 859, 1121, 1210
PspN4I GGNNCC 1 cut(s) 920
PspPI GGNCC 1 cut(s) 918
PspPPI RGGWCCY 1 cut(s) 918
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 3 cut(s) 319, 553, 598
RsaNI GTAC 3 cut(s) 318, 552, 597
RseI CAYNNNNRTG 1 cut(s) 1251
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 4 cut(s) 306, 362, 435, 483
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 5 cut(s) 38, 62, 115, 238, 1333
Sau96I GGNCC 1 cut(s) 918
SchI GAGTC 4 cut(s) 114, 256, 829, 1031
ScrFI CCNGG 4 cut(s) 789, 861, 1123, 1212
SduI GDGCHC 3 cut(s) 285, 399, 803
SfaNI GCATC 3 cut(s) 737, 840, 963
SfcI CTRYAG 2 cut(s) 321, 757
SinI GGWCC 1 cut(s) 918
SmiMI CAYNNNNRTG 1 cut(s) 1251
SmlI CTYRAG 3 cut(s) 284, 305, 1146
SmoI CTYRAG 3 cut(s) 284, 305, 1146
SphI GCATGC 1 cut(s) 1355
Sse9I AATT 9 cut(s) 20, 270, 299, 342, 363, 404, 1077, 1227, 1309
SseBI AGGCCT 1 cut(s) 1222
SsiI CCGC 2 cut(s) 127, 1103
SspMI CTAG 3 cut(s) 252, 593, 1017
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 1 cut(s) 1222
StyD4I CCNGG 4 cut(s) 787, 859, 1121, 1210
TaaI ACNGT 4 cut(s) 643, 758, 868, 1362
TaqI TCGA 2 cut(s) 910, 1446
TasI AATT 9 cut(s) 20, 270, 299, 342, 363, 404, 1077, 1227, 1309
Tru1I TTAA 4 cut(s) 306, 362, 435, 483
Tru9I TTAA 4 cut(s) 306, 362, 435, 483
TscAI CASTG 5 cut(s) 646, 689, 1140, 1253, 1515
TseI GCWGC 1 cut(s) 466
TspDTI ATGAA 8 cut(s) 594, 608, 735, 1071, 1269, 1393, 1482, 1506
TspRI CASTG 5 cut(s) 646, 689, 1140, 1253, 1515
Van91I CCANNNNNTGG 1 cut(s) 1287
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 918
XapI RAATTY 5 cut(s) 299, 342, 404, 1077, 1309
XceI RCATGY 1 cut(s) 1355
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XspI CTAG 3 cut(s) 252, 593, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.