AT1G07170

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002214
Physical Location & Seq
Forward (+)
2199997 .. 2201272
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07170.5

Sequence Viewer

Length: 333 bp
ATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAACAACCTGGCATTGCTATTGGGCGACTGTGCGAGAAGTGTGATGGAAAATGCGTCATATGTGATTCCTATGTCCGCCCGTGTACTCTGGTTAGGATTTGCGATGAATGCAACTATGGTTCGTTCCAAGGGCGGTGTGTCATATGCGGAGGAGTTGGAATCTCGGATGCTTACTACTGCAAAGAGTGTACACAACAGGAGAAAGATAGAGATGGTTGTCCTAAGATAGTCAATCTTGGCAGTGCCAAAACTGATCTGTTCTATGAACGTAAGAAATATGGATTCAAAAAACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

110

Amino Acids

12.43

Weight (kDa)

8.79

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 4e-50 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 112, 169, 183
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 121, 226
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 43
AoxI GGCC 1 cut(s) 3
BalI TGGCCA 1 cut(s) 5
BccI CCATC 2 cut(s) 74, 242
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 19, 193
BsaJI CCNNGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 13, 208
BseMI GCAATG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 34
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 2 cut(s) 24, 289
BspACI CCGC 3 cut(s) 112, 169, 183
BspANI GGCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 24, 289
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 66
BstAUI TGTACA 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 13, 208
BstKTI GATC 2 cut(s) 27, 292
BstMBI GATC 2 cut(s) 24, 289
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 13, 208
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 120, 225
CviAII CATG 1 cut(s) 28
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 2 cut(s) 120, 225
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 26, 291
DpnII GATC 2 cut(s) 24, 289
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 31
FaiI YATR 9 cut(s) 29, 95, 97, 108, 153, 179, 181, 300, 315
FatI CATG 1 cut(s) 27
FauNDI CATATG 2 cut(s) 95, 179
FbaI TGATCA 1 cut(s) 24
FokI GGATG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 31
HinfI GANTC 3 cut(s) 101, 195, 318
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 120, 225, 227
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 3 cut(s) 120, 225, 227
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 147, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 24, 289
LpnPI CCDG 6 cut(s) 30, 30, 47, 57, 110, 218
LweI GCATC 2 cut(s) 19, 193
MaeII ACGT 1 cut(s) 304
MalI GATC 2 cut(s) 26, 291
MboI GATC 2 cut(s) 24, 289
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 179
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeI CATATG 2 cut(s) 95, 179
NdeII GATC 2 cut(s) 24, 289
NlaIII CATG 1 cut(s) 31
PctI GAATGC 1 cut(s) 149
PfeI GAWTC 3 cut(s) 101, 195, 318
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
RsaI GTAC 2 cut(s) 121, 226
RsaNI GTAC 2 cut(s) 120, 225
Sau3AI GATC 2 cut(s) 24, 289
ScrFI CCNGG 1 cut(s) 45
SetI ASST 2 cut(s) 46, 307
SfaNI GCATC 2 cut(s) 19, 193
SsiI CCGC 3 cut(s) 112, 169, 183
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 307
TatI WGTACW 2 cut(s) 119, 224
TfiI GAWTC 3 cut(s) 101, 195, 318
TscAI CASTG 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 156, 315
TspRI CASTG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.