Rorug07G0235400

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002214
Physical Location & Seq
Reverse (-)
21610165 .. 21612572
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0235400.1

Sequence Viewer

Length: 708 bp
ATGGCTTATTACTTCTCAAACACTGTCTCTTCTGGTTCTGGATGGAAGAGAAGCCCTTATAGCTTGTTTGGGTGGAATATAGGCAAGCCAAAACTTGATGAAGATCCAAGGCCACAGATCAAGTACCATGATACTACTGATCTTCCATTTCCACCTTCTCTTCTGGACAAAACATTCTTAAGAGGTAGGGAACTCAAATGTTGCTATAAGGCCACCATTGATGGATTTAGTGCAGCTGATTTCCATAACTGTTGTGACTTCAAGGGGCCATGTGCCATAGTTGGCTACACAAACAAGTCCTTCAAGTTTGGTGCATTCAACCCTGAAGGCTATAGAAGCACAGATGATTACTATGACAGTTTTGATCCATTTCTATTCTACTGGACAGATAATGAGAAAACTGATGACCCAATTGTTCTGCCCAAAGTAGGAGGCAGTGGTGCAGCCCTTTTTGACTATGCTCGGGGTGGGCCACAATTTGGGGCCGATGGGCTCCTCATTGGCCCACCTCTAGCGCCGGTTATGGGTGGGTTTGCTGGCCCGGATACTAATTCGGGTATTGGTGATTTAAGGCAAGCCAAATCTAGATTAGGATTGTCATATGCAAAGAGAAAAGATGGAAAGGAGTCACTTTTTGGGGATGAGAATAGAGCAACCCTTGAAGAAGTAGAAGTCTATTGTAGTCCTCAAATTGCAAGCTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

235

Amino Acids

25.93

Weight (kDa)

5.28

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 60 - 226 1.4e-09 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 479
AclWI GGATC 2 cut(s) 98, 359
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 2 cut(s) 125, 704
AfiI CCNNNNNNNGG 3 cut(s) 428, 479, 524
AflII CTTAAG 1 cut(s) 178
AgsI TTSAA 4 cut(s) 262, 304, 319, 662
AluBI AGCT 3 cut(s) 63, 236, 699
AluI AGCT 3 cut(s) 63, 236, 699
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 2 cut(s) 98, 359
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 7 cut(s) 110, 210, 266, 470, 483, 502, 538
ApeKI GCWGC 2 cut(s) 233, 443
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 5 cut(s) 266, 470, 483, 503, 539
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 462
BanII GRGCYC 1 cut(s) 495
BbvI GCAGC 2 cut(s) 245, 455
BccI CCATC 4 cut(s) 36, 215, 482, 611
BciVI GTATCC 1 cut(s) 538
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 2 cut(s) 512, 585
BfmI CTRYAG 1 cut(s) 331
BfoI RGCGCY 1 cut(s) 518
BfrI CTTAAG 1 cut(s) 178
BfuI GTATCC 1 cut(s) 538
BisI GCNGC 2 cut(s) 234, 444
BlsI GCNGC 2 cut(s) 235, 445
Bme1390I CCNGG 1 cut(s) 542
BmeT110I CYCGRG 1 cut(s) 462
BmgT120I GGNCC 5 cut(s) 266, 470, 483, 503, 539
BmiI GGNNCC 3 cut(s) 267, 484, 494
BmrFI CCNGG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 3 cut(s) 428, 479, 524
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 47, 646
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 428, 479, 524
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 2 cut(s) 245, 455
BsgI GTGCAG 2 cut(s) 252, 462
BshFI GGCC 7 cut(s) 112, 212, 268, 472, 485, 504, 540
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 2 cut(s) 518, 542
BslI CCNNNNNNNGG 3 cut(s) 428, 479, 524
BsmAI GTCTC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 7 cut(s) 112, 212, 268, 472, 485, 504, 540
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 4 cut(s) 103, 117, 139, 364
BspANI GGCC 7 cut(s) 112, 212, 268, 472, 485, 504, 540
BspLI GGNNCC 3 cut(s) 267, 484, 494
BspPI GGATC 2 cut(s) 98, 359
BspTI CTTAAG 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 4 cut(s) 103, 117, 139, 364
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 3 cut(s) 25, 251, 359
Bst6I CTCTTC 3 cut(s) 34, 41, 165
BstAFI CTTAAG 1 cut(s) 178
BstC8I GCNNGC 4 cut(s) 86, 538, 576, 697
BstF5I GGATG 2 cut(s) 47, 646
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 4 cut(s) 106, 120, 142, 367
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 4 cut(s) 103, 117, 139, 364
BstMWI GCNNNNNNNGC 2 cut(s) 60, 336
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 245, 455
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 7 cut(s) 112, 212, 268, 472, 485, 504, 540
BtsCI GGATG 2 cut(s) 47, 646
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 21, 442
Cac8I GCNNGC 4 cut(s) 86, 538, 576, 697
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 5 cut(s) 266, 470, 483, 503, 539
Csp6I GTAC 2 cut(s) 124, 703
CviAII CATG 2 cut(s) 128, 270
CviQI GTAC 2 cut(s) 124, 703
DpnI GATC 4 cut(s) 105, 119, 141, 366
DpnII GATC 4 cut(s) 103, 117, 139, 364
Eam1104I CTCTTC 3 cut(s) 34, 41, 165
EarI CTCTTC 3 cut(s) 34, 41, 165
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 131, 273
FatI CATG 2 cut(s) 127, 269
FauNDI CATATG 1 cut(s) 601
Fnu4HI GCNGC 2 cut(s) 234, 444
FokI GGATG 2 cut(s) 54, 653
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 2 cut(s) 234, 444
FspBI CTAG 2 cut(s) 512, 585
GlaI GCGC 1 cut(s) 516
GluI GCNGC 2 cut(s) 234, 444
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 7 cut(s) 112, 212, 268, 472, 485, 504, 540
HapII CCGG 2 cut(s) 518, 542
HhaI GCGC 1 cut(s) 517
Hin1II CATG 2 cut(s) 131, 273
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 697
HinfI GANTC 1 cut(s) 626
HpaII CCGG 2 cut(s) 518, 542
HphI GGTGA 1 cut(s) 575
Hpy188III TCNNGA 3 cut(s) 39, 164, 585
HpyAV CCTTC 3 cut(s) 165, 310, 320
HpyCH4III ACNGT 3 cut(s) 25, 251, 359
HpyCH4V TGCA 5 cut(s) 233, 314, 443, 605, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 336
Hsp92II CATG 2 cut(s) 131, 273
HspAI GCGC 1 cut(s) 515
Kzo9I GATC 4 cut(s) 103, 117, 139, 364
LmnI GCTCC 1 cut(s) 498
LpnPI CCDG 8 cut(s) 18, 24, 149, 336, 367, 522, 531, 555
Lsp1109I GCAGC 2 cut(s) 245, 455
MaeI CTAG 2 cut(s) 512, 585
MaeIII GTNAC 2 cut(s) 254, 627
MalI GATC 4 cut(s) 105, 119, 141, 366
MboI GATC 4 cut(s) 103, 117, 139, 364
MboII GAAGA 6 cut(s) 21, 58, 113, 134, 152, 674
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 4 cut(s) 411, 476, 550, 690
MlyI GAGTC 1 cut(s) 635
MnlI CCTC 5 cut(s) 176, 425, 506, 519, 696
MseI TTAA 2 cut(s) 179, 569
MspA1I CMGCKG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 178
MspI CCGG 2 cut(s) 518, 542
MspR9I CCNGG 1 cut(s) 542
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 60, 336
NciI CCSGG 1 cut(s) 542
NdeI CATATG 1 cut(s) 601
NdeII GATC 4 cut(s) 103, 117, 139, 364
NlaIII CATG 2 cut(s) 131, 273
NlaIV GGNNCC 3 cut(s) 267, 484, 494
NmuCI GTSAC 2 cut(s) 254, 627
PctI GAATGC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 2 cut(s) 235, 445
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
PspN4I GGNNCC 3 cut(s) 267, 484, 494
PspPI GGNCC 5 cut(s) 266, 470, 483, 503, 539
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 125, 704
RsaNI GTAC 2 cut(s) 124, 703
SaqAI TTAA 2 cut(s) 179, 569
SatI GCNGC 2 cut(s) 234, 444
Sau3AI GATC 4 cut(s) 103, 117, 139, 364
Sau96I GGNCC 5 cut(s) 266, 470, 483, 503, 539
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 495
SetI ASST 6 cut(s) 65, 157, 187, 238, 511, 701
SfcI CTRYAG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 4 cut(s) 411, 476, 550, 690
SspMI CTAG 2 cut(s) 512, 585
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 3 cut(s) 25, 251, 359
TasI AATT 4 cut(s) 411, 476, 550, 690
TatI WGTACW 1 cut(s) 702
Tru1I TTAA 2 cut(s) 179, 569
Tru9I TTAA 2 cut(s) 179, 569
TscAI CASTG 2 cut(s) 28, 442
TseFI GTSAC 2 cut(s) 254, 627
TseI GCWGC 2 cut(s) 233, 443
Tsp45I GTSAC 2 cut(s) 254, 627
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 2 cut(s) 28, 442
Van91I CCANNNNNTGG 1 cut(s) 479
Vha464I CTTAAG 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 584
XspI CTAG 2 cut(s) 512, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.