Rorug05G0403100

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002214
Physical Location & Seq
Reverse (-)
55406232 .. 55406630
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0403100.1

Sequence Viewer

Length: 399 bp
ATGGATGGGATGGGCGCATCTGGAAACCATGATCTTAGAGGTCACAGCGTCATTAATGACTTTGAGTCACAAGACTTCATAGATGATGCAAACTTCGACCAGTTCATCGATCTTATTCGTGGAGAAAATGAAGATCCAGCAGCTGAGTTTAATCTTGACCTTACCAGCGGGTCATTCTTTGATAACCAGCTTTGTCCAACTACTTATCCGGTCAGTTGTTTTGGTTTTGATCATAATATTACAATCCTGTGCGATCCAGCTCCCTTTCTTAGTACGTTACCGAGTTTTGGTGGAGAAATGAACGACATTGGGGAAGAAGATAATGATGGGGGGGGATTCGTGTGGGACAACGACAACAACAAACACCACAGCCACAGCAACAAAGAAGCCAAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

132

Amino Acids

14.51

Weight (kDa)

4.05

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AclWI GGATC 2 cut(s) 128, 248
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 287
AhdI GACNNNNNGTC 1 cut(s) 64
AluBI AGCT 3 cut(s) 143, 190, 260
AluI AGCT 3 cut(s) 143, 190, 260
AlwI GGATC 2 cut(s) 128, 248
AlwNI CAGNNNCTG 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 140
AseI ATTAAT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 152
BccI CCATC 2 cut(s) 4, 320
BclI TGATCA 1 cut(s) 229
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmeRI GACNNNNNGTC 1 cut(s) 64
BmsI GCATC 2 cut(s) 26, 76
Bsa29I ATCGAT 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 100
BseCI ATCGAT 1 cut(s) 108
BseGI GGATG 2 cut(s) 10, 15
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 108
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 359
Bsp143I GATC 5 cut(s) 31, 109, 133, 229, 253
BspACI CCGC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 108
BspPI GGATC 2 cut(s) 128, 248
BsrI ACTGG 1 cut(s) 100
BssMI GATC 5 cut(s) 31, 109, 133, 229, 253
BstDEI CTNAG 3 cut(s) 35, 144, 269
BstF5I GGATG 2 cut(s) 10, 15
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 5 cut(s) 34, 112, 136, 232, 256
BstMBI GATC 5 cut(s) 31, 109, 133, 229, 253
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 2 cut(s) 10, 15
CaiI CAGNNNCTG 1 cut(s) 143
CfoI GCGC 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 273
CviAII CATG 1 cut(s) 29
CviJI RGCY 5 cut(s) 143, 190, 260, 372, 389
CviKI_1 RGCY 5 cut(s) 143, 190, 260, 372, 389
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 3 cut(s) 35, 144, 269
DpnI GATC 5 cut(s) 33, 111, 135, 231, 255
DpnII GATC 5 cut(s) 31, 109, 133, 229, 253
DriI GACNNNNNGTC 1 cut(s) 64
Eam1105I GACNNNNNGTC 1 cut(s) 64
FaeI CATG 1 cut(s) 32
FaiI YATR 3 cut(s) 30, 80, 234
FaqI GGGAC 1 cut(s) 359
FatI CATG 1 cut(s) 28
FauI CCCGC 1 cut(s) 161
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 2 cut(s) 17, 22
Fsp4HI GCNGC 1 cut(s) 141
GlaI GCGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 141
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 37
HhaI GCGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 2 cut(s) 65, 336
HpaII CCGG 1 cut(s) 209
Hpy188III TCNNGA 2 cut(s) 21, 155
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 35, 144, 269
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 5 cut(s) 31, 109, 133, 229, 253
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 6, 113, 150, 178, 200, 222, 260, 270
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 2 cut(s) 26, 76
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 41, 66, 276
MalI GATC 5 cut(s) 33, 111, 135, 231, 255
MboI GATC 5 cut(s) 31, 109, 133, 229, 253
MboII GAAGA 3 cut(s) 143, 326, 329
MflI RGATCY 1 cut(s) 133
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 1 cut(s) 32
MseI TTAA 2 cut(s) 54, 150
MspA1I CMGCKG 2 cut(s) 143, 168
MspI CCGG 1 cut(s) 209
NdeII GATC 5 cut(s) 31, 109, 133, 229, 253
NlaIII CATG 1 cut(s) 32
NmuCI GTSAC 2 cut(s) 41, 66
PfeI GAWTC 1 cut(s) 336
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PshBI ATTAAT 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 54, 150
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 5 cut(s) 31, 109, 133, 229, 253
SchI GAGTC 1 cut(s) 74
SetI ASST 7 cut(s) 43, 145, 162, 192, 262, 278, 397
SfaNI GCATC 2 cut(s) 26, 76
SsiI CCGC 1 cut(s) 168
SspI AATATT 1 cut(s) 238
TaiI ACGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 96, 108
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 2 cut(s) 54, 150
Tru9I TTAA 2 cut(s) 54, 150
TseFI GTSAC 2 cut(s) 41, 66
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 41, 66
TspDTI ATGAA 4 cut(s) 67, 94, 144, 314
VspI ATTAAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.