MD04G1048100.v1.1

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0002214
Physical Location & Seq
Reverse (-)
5638410 .. 5638742
333 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1048100.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGCGAAGCATCATCCTGACCTAATTATGTGCCGGAAGCAACCGGGAATTGCCATTGGAAGGTTGTGTGAGAAGTGTGATGGCAAGTGTGTGATCTGTGATTCTTTGGTTCGTCCATGCACACTTGTTCGGGTGTGGGATGAGTGCAACTACGGATCGTTCCAAGGACGGTGTGTTGTGTGTGGAGGGCTTGGAATTTCTGATGCTTATTACTGCAAAGAGTGTACTCAGCTGGAGAAAGATCGAGATGGCTGTCCCAAAATTGTCAATCTAGGAAGTGCCAAAACAGATCTATTCTATGAACGCAAAAAGTATGGTTTCAAGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

111

Amino Acids

12.46

Weight (kDa)

8.85

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 1.1e-48 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AlwI GGATC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 45
BccI CCATC 2 cut(s) 74, 242
BcnI CCSGG 1 cut(s) 45
BfaI CTAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 19, 193
BpmI CTGGAG 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 13, 145
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 34, 44
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 240
Bsp143I GATC 4 cut(s) 93, 155, 241, 289
BspCNI CTCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 4 cut(s) 93, 155, 241, 289
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 13, 145
BstKTI GATC 4 cut(s) 96, 158, 244, 292
BstMBI GATC 4 cut(s) 93, 155, 241, 289
BstSCI CCNGG 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtsCI GGATG 2 cut(s) 13, 145
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 117
CviJI RGCY 3 cut(s) 190, 232, 252
CviKI_1 RGCY 3 cut(s) 190, 232, 252
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 228
DpnI GATC 4 cut(s) 95, 157, 243, 291
DpnII GATC 4 cut(s) 93, 155, 241, 289
Eco130I CCWWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 120
FaiI YATR 4 cut(s) 29, 118, 300, 315
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 116
FokI GGATG 1 cut(s) 152
FspBI CTAG 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 254
HapII CCGG 2 cut(s) 34, 44
Hin1II CATG 1 cut(s) 120
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 34, 44
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 17, 245, 322
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 120, 147, 216
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 120
Kzo9I GATC 4 cut(s) 93, 155, 241, 289
LpnPI CCDG 4 cut(s) 30, 47, 57, 218
LweI GCATC 2 cut(s) 19, 193
MaeI CTAG 1 cut(s) 272
MalI GATC 4 cut(s) 95, 157, 243, 291
MboI GATC 4 cut(s) 93, 155, 241, 289
MflI RGATCY 1 cut(s) 289
MluCI AATT 4 cut(s) 24, 48, 195, 261
MnlI CCTC 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 2 cut(s) 34, 44
MspR9I CCNGG 1 cut(s) 45
NciI CCSGG 1 cut(s) 45
NdeII GATC 4 cut(s) 93, 155, 241, 289
NlaIII CATG 1 cut(s) 120
PfeI GAWTC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
Sau3AI GATC 4 cut(s) 93, 155, 241, 289
ScrFI CCNGG 1 cut(s) 45
SetI ASST 3 cut(s) 24, 65, 234
SfaNI GCATC 2 cut(s) 19, 193
Sse9I AATT 4 cut(s) 24, 48, 195, 261
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 244
TasI AATT 4 cut(s) 24, 48, 195, 261
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 168
XapI RAATTY 1 cut(s) 195
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.