MD12G1170100.v1.1

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0002214
Physical Location & Seq
Reverse (-)
25106274 .. 25106606
333 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1170100.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGCGAAGCATCATCCTGACTTGATTATGTGTCGGAAGCAACCTGGAATAGCTATTGGAAGGTTGTGTGAAAAGTGCGACGGTAAGTGTGTAATTTGTGACTCTTATGTGCGCCCTTGCACGCTTGTTCGGGTTTGCGATGAGTGCAACTATGGATCTTTCCAGGGAAGGTGTGTTATTTGTGGTGGGGTTGGAATTTCTGATGCTTATTACTGCAAAGAGTGTACTCAGCAGGAGAAAGATAGAGATGGCTGCCCGAAAATTGTGAATCTGGGAAGTGCCAAAACAGATCTGTTCTATGAACGGAAAAAGTATGGTTTCAAGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

8.79

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 6.9e-50 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 1 cut(s) 226
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 2 cut(s) 43, 162
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 195
AspLEI GCGC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 2 cut(s) 45, 164
BglII AGATCT 1 cut(s) 289
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 45, 164
BmrFI CCNGG 2 cut(s) 45, 164
BmsI GCATC 2 cut(s) 19, 193
BsaJI CCNNGG 1 cut(s) 163
BseBI CCWGG 2 cut(s) 45, 164
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 155, 289
BspCNI CTCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 155, 289
Bst2UI CCWGG 2 cut(s) 45, 164
Bst4CI ACNGT 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 158, 292
BstMBI GATC 2 cut(s) 155, 289
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 2 cut(s) 45, 164
BstSCI CCNGG 2 cut(s) 43, 162
BstV1I GCAGC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 155, 289
BstYI RGATCY 2 cut(s) 155, 289
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 225
CviJI RGCY 2 cut(s) 53, 252
CviKI_1 RGCY 2 cut(s) 53, 252
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 157, 291
DpnII GATC 2 cut(s) 155, 289
EcoRII CCWGG 2 cut(s) 43, 162
FaiI YATR 5 cut(s) 29, 108, 153, 300, 315
Fnu4HI GCNGC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 253
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 253
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 2 cut(s) 101, 268
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 36, 202
Hpy188III TCNNGA 2 cut(s) 17, 322
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 54, 162
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 3 cut(s) 120, 147, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 228
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 155, 289
LpnPI CCDG 7 cut(s) 30, 30, 57, 149, 176, 218, 257
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 2 cut(s) 19, 193
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 157, 291
MboI GATC 2 cut(s) 155, 289
MflI RGATCY 2 cut(s) 155, 289
MluCI AATT 3 cut(s) 93, 195, 261
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 14, 172
MspR9I CCNGG 2 cut(s) 45, 164
MvaI CCWGG 2 cut(s) 45, 164
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 2 cut(s) 155, 289
NmuCI GTSAC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 43, 162
PspGI CCWGG 2 cut(s) 43, 162
PsuI RGATCY 2 cut(s) 155, 289
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 2 cut(s) 155, 289
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 45, 164
SetI ASST 4 cut(s) 46, 55, 65, 173
SfaNI GCATC 2 cut(s) 19, 193
Sse9I AATT 3 cut(s) 93, 195, 261
StyD4I CCNGG 2 cut(s) 43, 162
TaaI ACNGT 1 cut(s) 83
TasI AATT 3 cut(s) 93, 195, 261
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 1 cut(s) 268
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 319
XapI RAATTY 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.