Prupe.1G204600_v2.0.a1

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0002214
Physical Location & Seq
Forward (+)
20510179 .. 20510511
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G204600.1

Sequence Viewer

Length: 333 bp
ATGGCCAAGCATAATCCTGACCTAATTATGTGCCGCAAGCAACCCGGAATAGCCATCGGAAGGTTGTGTGAAAAGTGTGACGGCAAGTGCGTAATCTGCGATTCTTTGGTGCGCCCTTGCACGCTTGTTCGGGTGTGCGATGAGTGCAACTATGGATCATTCCAGGGCCGGTGTGTTGTGTGTGGAGGGGTTGGAATTTCTGACGCTTACTACTGCAAAGAGTGTACTCAGCTGGAAAAAGACAGAGACGGGTGTCCCAAAATTGTGAATTTGGGAAGTGCCAAAACCGATCTGTTCTATGAACGTAAAAAGTATGGTTTCAAGAACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

111

Amino Acids

12.3

Weight (kDa)

8.69

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 195, 268
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 163
AoxI GGCC 2 cut(s) 3, 166
ApoI RAATTY 2 cut(s) 195, 268
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 45
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 240
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 45, 164
BmgT120I GGNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 45, 164
BoxI GACNNNNGTC 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse118I RCCGGY 1 cut(s) 168
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 242
BshFI GGCC 2 cut(s) 5, 168
BsiSI CCGG 2 cut(s) 45, 169
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 240
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 2 cut(s) 5, 168
Bsp143I GATC 2 cut(s) 155, 289
BspACI CCGC 1 cut(s) 34
BspANI GGCC 2 cut(s) 5, 168
BspCNI CTCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 155, 289
Bst2UI CCWGG 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 38, 122
BstDEI CTNAG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 158, 292
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 155, 289
BstMWI GCNNNNNNNGC 2 cut(s) 96, 144
BstNI CCWGG 1 cut(s) 164
BstPAI GACNNNNGTC 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 43, 162
BsuRI GGCC 2 cut(s) 5, 168
BtgZI GCGATG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 38, 122
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 225
CviJI RGCY 4 cut(s) 5, 53, 168, 232
CviKI_1 RGCY 4 cut(s) 5, 53, 168, 232
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 157, 291
DpnII GATC 2 cut(s) 155, 289
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 240
FaiI YATR 5 cut(s) 12, 29, 153, 300, 315
FaqI GGGAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 34
HaeIII GGCC 2 cut(s) 5, 168
HapII CCGG 2 cut(s) 45, 169
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 45, 169
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 59, 202
Hpy188III TCNNGA 2 cut(s) 17, 322
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 120, 147, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 144
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 304
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 155, 289
LpnPI CCDG 6 cut(s) 30, 58, 149, 176, 182, 218
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 157, 291
MboI GATC 2 cut(s) 155, 289
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 24, 195, 261, 268
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 179
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 2 cut(s) 45, 169
MspR9I CCNGG 2 cut(s) 45, 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 96, 144
NciI CCSGG 1 cut(s) 45
NdeII GATC 2 cut(s) 155, 289
NmuCI GTSAC 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 35
PshAI GACNNNNGTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspPI GGNCC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 155, 289
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 45, 164
SetI ASST 4 cut(s) 24, 65, 234, 307
Sse9I AATT 4 cut(s) 24, 195, 261, 268
SsiI CCGC 1 cut(s) 34
StyD4I CCNGG 2 cut(s) 43, 162
TaiI ACGT 1 cut(s) 307
TasI AATT 4 cut(s) 24, 195, 261, 268
TatI WGTACW 1 cut(s) 224
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 1 cut(s) 101
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 315
XapI RAATTY 2 cut(s) 195, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.