pycom04g04210

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0002214
Physical Location & Seq
Reverse (-)
3789482 .. 3789814
333 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04210.1

Sequence Viewer

Length: 333 bp
ATGGCGAAGCATCATCCTGACCTAATTATGTGCCGGAAGCAACCGGGGATAGCCATCGGAAGGTTGTGTGAGAAGTGTGATGGCAAGTGTGTGATCTGTGATTCTTTGGTTCGGCCATGCACACTTGTTCGGGTGTGCGATGAGTGCAACTACGGATCGTTCCAGGGACGGTGTGTTGTGTGTGGAGGGCTTGGAATTTCTGATGCTTATTACTGCAAAGAGTGTACTCAGCTGGAGAAAGATCGAGATGGCTGTCCCAAAATTGTCAATCTAGGAAGTGCCAAAACAGATCTATTCTATGAACGCAAAAAGTATGGTTTCAAGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

111

Amino Acids

12.38

Weight (kDa)

8.8

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 9.7e-50 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AlwI GGATC 1 cut(s) 163
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 45
BccI CCATC 3 cut(s) 62, 74, 242
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 1 cut(s) 45
BfaI CTAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 45, 164
BmrFI CCNGG 2 cut(s) 45, 164
BmsI GCATC 2 cut(s) 19, 193
BpmI CTGGAG 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 44, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 44, 163
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 242
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 34, 44
BslFI GGGAC 2 cut(s) 180, 240
BslI CCNNNNNNNGG 1 cut(s) 60
BsmFI GGGAC 2 cut(s) 180, 240
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 4 cut(s) 93, 155, 241, 289
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 44, 163
BssMI GATC 4 cut(s) 93, 155, 241, 289
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 4 cut(s) 96, 158, 244, 292
BstMBI GATC 4 cut(s) 93, 155, 241, 289
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 43, 162
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 13
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 117
CviJI RGCY 5 cut(s) 53, 115, 190, 232, 252
CviKI_1 RGCY 5 cut(s) 53, 115, 190, 232, 252
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 228
DpnI GATC 4 cut(s) 95, 157, 243, 291
DpnII GATC 4 cut(s) 93, 155, 241, 289
EaeI YGGCCR 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 120
FaiI YATR 4 cut(s) 29, 118, 300, 315
FaqI GGGAC 2 cut(s) 180, 240
FatI CATG 1 cut(s) 116
FspBI CTAG 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 115
HapII CCGG 2 cut(s) 34, 44
Hin1II CATG 1 cut(s) 120
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 34, 44
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 59, 202
Hpy188III TCNNGA 3 cut(s) 17, 245, 322
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 120, 147, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 120
Kzo9I GATC 4 cut(s) 93, 155, 241, 289
LpnPI CCDG 6 cut(s) 30, 47, 57, 149, 176, 218
LweI GCATC 2 cut(s) 19, 193
MaeI CTAG 1 cut(s) 272
MalI GATC 4 cut(s) 95, 157, 243, 291
MboI GATC 4 cut(s) 93, 155, 241, 289
MflI RGATCY 1 cut(s) 289
MluCI AATT 3 cut(s) 24, 195, 261
MnlI CCTC 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 2 cut(s) 34, 44
MspR9I CCNGG 2 cut(s) 45, 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 45
NdeII GATC 4 cut(s) 93, 155, 241, 289
NlaIII CATG 1 cut(s) 120
PfeI GAWTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
Sau3AI GATC 4 cut(s) 93, 155, 241, 289
ScrFI CCNGG 2 cut(s) 45, 164
SetI ASST 3 cut(s) 24, 65, 234
SfaNI GCATC 2 cut(s) 19, 193
Sse9I AATT 3 cut(s) 24, 195, 261
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 43, 162
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 244
TasI AATT 3 cut(s) 24, 195, 261
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 168
XapI RAATTY 1 cut(s) 195
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.