Prupe.6G055400_v2.0.a1

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002214
Physical Location & Seq
Forward (+)
3912716 .. 3914498
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G055400.2

Sequence Viewer

Length: 333 bp
ATGGCCAAGCATCACCCTGATCTGATTATGTGCAGGAAGCAACCCGGGATCGCCATCGGGCGGCTGTGCGAGAAGTGTGATGGCAAGTGCGTCATCTGTGATTCCTACGTTCGTCCTTGCACACTTGTGAGGGTTTGTGATGAATGCAACTACGGATCTTTTCAAGGCCGGTGCGTTATCTGTGGAGGAGTTGGAATTTCAGATGCCTACTATTGCAAAGAGTGTACACAACAAGAGAAGGATAGGGATGGATGTCCAAAGATAGTAAATTTAGGCAGTGCCAAAACTGACCTCTTTTATGAAAGAAAGAAATATGGATTTAAGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

8.79

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AclWI GGATC 2 cut(s) 56, 163
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 195, 268
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 164
AleI CACNNNNGTG 1 cut(s) 125
AlwI GGATC 2 cut(s) 56, 163
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 2 cut(s) 3, 166
ApoI RAATTY 2 cut(s) 195, 268
AsuC2I CCSGG 2 cut(s) 45, 46
AsuHPI GGTGA 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 44
BalI TGGCCA 1 cut(s) 5
BccI CCATC 3 cut(s) 62, 74, 242
BcnI CCSGG 2 cut(s) 45, 46
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 2 cut(s) 45, 46
BmeT110I CYCGRG 1 cut(s) 44
BmrFI CCNGG 2 cut(s) 45, 46
BmsI GCATC 2 cut(s) 19, 193
BpuMI CCSGG 2 cut(s) 45, 46
BsaBI GATNNNNATC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse118I RCCGGY 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 253, 257
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 2 cut(s) 5, 168
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 45, 169
BslI CCNNNNNNNGG 1 cut(s) 60
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 5, 168
BsoBI CYCGRG 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 19, 48, 155
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 5, 168
BspPI GGATC 2 cut(s) 56, 163
BsrFI RCCGGY 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 3 cut(s) 19, 48, 155
BstAUI TGTACA 1 cut(s) 224
BstF5I GGATG 2 cut(s) 253, 257
BstKTI GATC 3 cut(s) 22, 51, 158
BstMBI GATC 3 cut(s) 19, 48, 155
BstSCI CCNGG 2 cut(s) 43, 44
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 2 cut(s) 5, 168
BtsCI GGATG 2 cut(s) 253, 257
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 168
Cfr9I CCCGGG 1 cut(s) 44
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 225
CviJI RGCY 3 cut(s) 5, 64, 168
CviKI_1 RGCY 3 cut(s) 5, 64, 168
CviQI GTAC 1 cut(s) 225
DpnI GATC 3 cut(s) 21, 50, 157
DpnII GATC 3 cut(s) 19, 48, 155
EaeI YGGCCR 1 cut(s) 3
Eco88I CYCGRG 1 cut(s) 44
FaiI YATR 3 cut(s) 29, 300, 315
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 2 cut(s) 260, 264
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 2 cut(s) 5, 168
HapII CCGG 2 cut(s) 45, 169
HgaI GACGC 1 cut(s) 79
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 45, 169
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 225, 227
Hpy188I TCNGA 2 cut(s) 24, 202
Hpy8I GTNNAC 2 cut(s) 225, 227
HpyAV CCTTC 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 4 cut(s) 33, 120, 147, 216
HpySE526I ACGT 1 cut(s) 108
Kzo9I GATC 3 cut(s) 19, 48, 155
LpnPI CCDG 4 cut(s) 19, 30, 58, 182
LweI GCATC 2 cut(s) 19, 193
MaeII ACGT 1 cut(s) 108
MalI GATC 3 cut(s) 21, 50, 157
MboI GATC 3 cut(s) 19, 48, 155
MflI RGATCY 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 195, 268
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 3 cut(s) 123, 179, 302
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 45, 169
MspR9I CCNGG 2 cut(s) 45, 46
Mva1269I GAATGC 1 cut(s) 149
NciI CCSGG 2 cut(s) 45, 46
NdeII GATC 3 cut(s) 19, 48, 155
OliI CACNNNNGTG 1 cut(s) 125
PctI GAATGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 63
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 3 cut(s) 19, 48, 155
ScrFI CCNGG 2 cut(s) 45, 46
SetI ASST 2 cut(s) 111, 294
SfaNI GCATC 2 cut(s) 19, 193
SmaI CCCGGG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 2 cut(s) 195, 268
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 43, 44
TaiI ACGT 1 cut(s) 111
TasI AATT 2 cut(s) 195, 268
TatI WGTACW 1 cut(s) 224
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 156, 315
TspGWI ACGGA 1 cut(s) 168
TspMI CCCGGG 1 cut(s) 44
TspRI CASTG 1 cut(s) 283
XapI RAATTY 2 cut(s) 195, 268
XmaI CCCGGG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.