FvH4_3g38910

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002214
Physical Location & Seq
Reverse (-)
33175939 .. 33178026
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38910.t1

Sequence Viewer

Length: 333 bp
ATGGCCAAGCATCACCCTGATTTAATCATGTGCCGGAAGCAACCAGGAATTGCCATCGGGCGGCTCTGCGAGAAGTGTGACGGTAAGTGTGTTATATGCGACTCTTATGTGCGCCCTTGCACGCTTGTGAGGGTTTGTGATGAATGCAACTACGGATCATTTCAGGGTCGTTGTGTTATTTGTGGAGGAGTCGGGATTTCTGATGCTTACTATTGCAAAGAGTGTACGCAGCAGGAGAAAGACAGAGATGGATGCCCAAAGATTGTCAATTTAGGGAGTGCCAAAACGGATCTCTTTTATGAACGGAAGAAATATGGTTTTAAGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

8.79

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 6.9e-50 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AclWI GGATC 2 cut(s) 163, 297
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 60
AjnI CCWGG 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 125
AlwI GGATC 2 cut(s) 163, 297
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 229
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 5
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 241
BccI CCATC 2 cut(s) 62, 242
BciT130I CCWGG 1 cut(s) 45
BisI GCNGC 2 cut(s) 62, 230
BlsI GCNGC 2 cut(s) 63, 231
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 3 cut(s) 19, 193, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 60
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 155, 289
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 5
BspPI GGATC 2 cut(s) 163, 297
BssMI GATC 2 cut(s) 155, 289
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 122
BstF5I GGATG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 158, 292
BstMBI GATC 2 cut(s) 155, 289
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 28
CviJI RGCY 2 cut(s) 5, 64
CviKI_1 RGCY 2 cut(s) 5, 64
CviQI GTAC 1 cut(s) 225
DpnI GATC 2 cut(s) 157, 291
DpnII GATC 2 cut(s) 155, 289
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 31
FaiI YATR 6 cut(s) 29, 95, 97, 108, 300, 315
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 62, 230
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 62, 230
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 62, 230
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 2 cut(s) 101, 189
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 3 cut(s) 120, 147, 216
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 155, 289
LpnPI CCDG 6 cut(s) 30, 30, 47, 57, 149, 218
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 3 cut(s) 19, 193, 242
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 157, 291
MboI GATC 2 cut(s) 155, 289
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 48, 268
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 95, 198
MnlI CCTC 2 cut(s) 123, 179
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 23, 321
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 1 cut(s) 45
NdeII GATC 2 cut(s) 155, 289
NlaIII CATG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 125
PctI GAATGC 1 cut(s) 149
PkrI GCNGC 2 cut(s) 63, 231
PleI GAGTC 2 cut(s) 95, 197
PpsI GAGTC 2 cut(s) 95, 197
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 2 cut(s) 23, 321
SatI GCNGC 2 cut(s) 62, 230
Sau3AI GATC 2 cut(s) 155, 289
SchI GAGTC 2 cut(s) 95, 198
ScrFI CCNGG 1 cut(s) 45
SfaNI GCATC 3 cut(s) 19, 193, 242
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 2 cut(s) 48, 268
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 83
TasI AATT 2 cut(s) 48, 268
TauI GCSGC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 23, 321
Tru9I TTAA 2 cut(s) 23, 321
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 156, 315
TspGWI ACGGA 3 cut(s) 168, 302, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.