Rh3DG122700

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002214
Physical Location & Seq
Forward (+)
10384652 .. 10384984
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG122700.1

Sequence Viewer

Length: 333 bp
ATGGCAAAGCATCATCCTGACCTGATTATGTGCCGGAAACAACCAGGAATAGCTATTGGAAGGTTGTGCGAAAAGTGTGATGGTAAGTGTGTGATCTGTGACTCCTATGTGCGTCCCTGCACGCTGGTTAGGGTCTGCGATGAGTGCAACTACGGATCCTTCCAGGGACGTTGTGTTATCTGTGGAGGTGTTGGAATTTCTGATGCTTATTACTGCAAAGAGTGTACTCAGCAGGAGAAAGATAGAGATGGGTGTCCAAAAATTGTGAATCTGGGAAGTGCCAAAACAGATTTATTCTATGAACGGAAGAAGTATGGTTTCAAGAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

8.79

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 6.9e-50 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 150, 163
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 1 cut(s) 226
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 2 cut(s) 43, 162
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 2 cut(s) 150, 163
ApoI RAATTY 1 cut(s) 195
BamHI GGATCC 1 cut(s) 155
BccI CCATC 2 cut(s) 74, 242
BciT130I CCWGG 2 cut(s) 45, 164
Bme1390I CCNGG 2 cut(s) 45, 164
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 45, 164
BmsI GCATC 2 cut(s) 19, 193
BsaJI CCNNGG 1 cut(s) 163
BseBI CCWGG 2 cut(s) 45, 164
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 99, 180
BsmFI GGGAC 2 cut(s) 99, 180
Bsp143I GATC 2 cut(s) 93, 155
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 2 cut(s) 150, 163
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 93, 155
Bst2UI CCWGG 2 cut(s) 45, 164
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 2 cut(s) 96, 158
BstMBI GATC 2 cut(s) 93, 155
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 2 cut(s) 45, 164
BstSCI CCNGG 2 cut(s) 43, 162
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 122
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 225
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 95, 157
DpnII GATC 2 cut(s) 93, 155
EcoRII CCWGG 2 cut(s) 43, 162
FaiI YATR 4 cut(s) 29, 108, 300, 315
FaqI GGGAC 2 cut(s) 99, 180
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 101
HinfI GANTC 2 cut(s) 101, 268
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 17, 322
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 54, 169
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 120, 147, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 169
Kzo9I GATC 2 cut(s) 93, 155
LweI GCATC 2 cut(s) 19, 193
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 95, 157
MboI GATC 2 cut(s) 93, 155
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 155
MluCI AATT 2 cut(s) 195, 261
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 179
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 45, 164
MvaI CCWGG 2 cut(s) 45, 164
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 2 cut(s) 93, 155
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 268
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 43, 162
PspGI CCWGG 2 cut(s) 43, 162
PspN4I GGNNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 93, 155
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 45, 164
SetI ASST 6 cut(s) 24, 55, 65, 172, 190, 332
SfaNI GCATC 2 cut(s) 19, 193
Sse9I AATT 2 cut(s) 195, 261
StyD4I CCNGG 2 cut(s) 43, 162
TaiI ACGT 1 cut(s) 172
TasI AATT 2 cut(s) 195, 261
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 1 cut(s) 268
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 2 cut(s) 168, 319
XapI RAATTY 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.