FvH4_4g10642

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002214
Physical Location & Seq
Reverse (-)
14372804 .. 14373278
475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10642.t1

Sequence Viewer

Length: 390 bp
ATGTTTCAGCTAGTTATAAGATATTATATATGCACACATTTGACAATTATCCGTGGCCAACAACATCATCCGGACCTGATAATGTGTCGAAAACAACCCGGAATAGCGATCGGAAGGTTGTGCGAAAAGTGTGATGGTAAGTGTGTGTTGTGCGACTCTATGGTGCGTCCTTTCACTCTTGTTCGGATCTGCGATGAATGCAACTACGGATCGTTCCAAGGGCGGTGCGTCGTGTGTGGAGGGGTTGGAATTTCTGATGCTTATTACTGTAAAGAGTGTAGTCAGCTAGAGAAGGATAGAGATGGGTGTCCTAAGATTGTGAATCTTGGAACTGCAAGAACAGATCTAATTTATGAACGCAAAAAGTATGGTTTCAAGAAAAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

130

Amino Acids

14.74

Weight (kDa)

8.9

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 21 - 122 4.7e-48 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 1 cut(s) 223
AclWI GGATC 2 cut(s) 194, 217
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 1 cut(s) 249
AgsI TTSAA 1 cut(s) 376
AluBI AGCT 2 cut(s) 10, 286
AluI AGCT 2 cut(s) 10, 286
AlwI GGATC 2 cut(s) 194, 217
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 73
BalI TGGCCA 1 cut(s) 57
BccI CCATC 2 cut(s) 128, 296
BcnI CCSGG 1 cut(s) 99
BfaI CTAG 2 cut(s) 11, 287
BglII AGATCT 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 52, 217
BsaWI WCCGGW 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 52, 217
BseGI GGATG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 111
BsiSI CCGG 2 cut(s) 71, 99
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 5 cut(s) 108, 186, 209, 343, 383
BspACI CCGC 1 cut(s) 223
BspANI GGCC 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 70
BspHI TCATGA 1 cut(s) 386
BspPI GGATC 2 cut(s) 194, 217
BssECI CCNNGG 2 cut(s) 52, 217
BssMI GATC 5 cut(s) 108, 186, 209, 343, 383
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 5 cut(s) 111, 189, 212, 346, 386
BstMBI GATC 5 cut(s) 108, 186, 209, 343, 383
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 186, 343
BstYI RGATCY 2 cut(s) 186, 343
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 67
CciI TCATGA 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 2 cut(s) 155, 217
CviAII CATG 1 cut(s) 387
CviJI RGCY 3 cut(s) 10, 57, 286
CviKI_1 RGCY 3 cut(s) 10, 57, 286
DdeI CTNAG 1 cut(s) 312
DpnI GATC 5 cut(s) 110, 188, 211, 345, 385
DpnII GATC 5 cut(s) 108, 186, 209, 343, 383
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 390
FaiI YATR 8 cut(s) 17, 27, 29, 31, 161, 354, 369, 388
FatI CATG 1 cut(s) 386
FokI GGATG 1 cut(s) 54
FspBI CTAG 2 cut(s) 11, 287
HaeIII GGCC 1 cut(s) 57
HapII CCGG 2 cut(s) 71, 99
HgaI GACGC 2 cut(s) 155, 217
Hin1II CATG 1 cut(s) 390
HinfI GANTC 2 cut(s) 155, 322
HpaII CCGG 2 cut(s) 71, 99
Hpy188I TCNGA 3 cut(s) 113, 186, 256
Hpy188III TCNNGA 3 cut(s) 71, 376, 387
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 108, 286
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 33, 201, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 1 cut(s) 390
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 5 cut(s) 108, 186, 209, 343, 383
LpnPI CCDG 3 cut(s) 84, 89, 112
LweI GCATC 1 cut(s) 247
MaeI CTAG 2 cut(s) 11, 287
MalI GATC 5 cut(s) 110, 188, 211, 345, 385
MboI GATC 5 cut(s) 108, 186, 209, 343, 383
MflI RGATCY 2 cut(s) 186, 343
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 3 cut(s) 45, 249, 348
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 1 cut(s) 233
Mox20I TGGCCA 1 cut(s) 57
MroI TCCGGA 1 cut(s) 70
MscI TGGCCA 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 2 cut(s) 71, 99
MspR9I CCNGG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 99
NdeII GATC 5 cut(s) 108, 186, 209, 343, 383
NlaIII CATG 1 cut(s) 390
PagI TCATGA 1 cut(s) 386
PctI GAATGC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 322
Ple19I CGATCG 1 cut(s) 111
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PsiI TTATAA 1 cut(s) 17
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 186, 343
PvuI CGATCG 1 cut(s) 111
Sau3AI GATC 5 cut(s) 108, 186, 209, 343, 383
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 99
SetI ASST 4 cut(s) 12, 78, 119, 288
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 73
Sse9I AATT 3 cut(s) 45, 249, 348
SsiI CCGC 1 cut(s) 223
SspMI CTAG 2 cut(s) 11, 287
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 88
TasI AATT 3 cut(s) 45, 249, 348
TfiI GAWTC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 210, 369
TspGWI ACGGA 2 cut(s) 41, 222
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 1 cut(s) 249
XspI CTAG 2 cut(s) 11, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.