Rorug05G0403200

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002214
Physical Location & Seq
Reverse (-)
55420011 .. 55421509
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0403200.1

Sequence Viewer

Length: 945 bp
ATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTCGAGATATTGATTCTTTTACACAACAATCTGCTTCTCGTATCGACGAATTAGAAGAGATGTTAACTGGCAACCGTATCTGGAAACAACGATTAGTGGATATTGGTACTATCACTGCACAGGAAGCAAAGGATTGGGGATTCTATGGTGTAATGTTAAGAGGTTCAGGGGTATGCTGGGATTTGCGAAGAGCAGCACCTTACGATGTTTATGACCAGTTGGATTTTGACGTACCAGTAGGTACTAGAGGAGATTGCTATGATCGTTACTGTATTCGTATTGAAGAGATGCAACAAAGTGTTCGGATCATTGTGCAATGTCTTAATAAAATGCCTAGTGGCATGATCAAAGCTGATGATTGTAAACTTTGTCCTCCATCACGAGTTAAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTCTGCTAGGGCGTGTGGTTGACGGGTTGGGAGTTCCTATTGATGGAAGAGGAGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGCATTATTGAACGGAGTGGTGGTGACCCCTTCACTCTTCCACGGACTAATACATGTACCGAATGCTCATACGAGGAAGTTGACTCCTGGGTCTGGGGGCTGCTTCGAGAAATCCTTTCTTTCTCTTCCACTCAGGGGGGTGCGGACACACCTGGGCGGATTACAGGTGATGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATGTAGACCCGTCGGGCAGGGATAATCATTCCGGTCCTGGGAGAGATGGCGACCATTCTCAAGAACCAAAAAGAGTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

314

Amino Acids

34.48

Weight (kDa)

5.66

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_49kDa PF00346 1 - 151 5.9e-60 Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 728
AccI GTMKAC 1 cut(s) 867
AciI CCGC 4 cut(s) 533, 782, 796, 825
AclWI GGATC 2 cut(s) 371, 520
AcsI RAATTY 1 cut(s) 461
AfaI GTAC 5 cut(s) 166, 291, 301, 697, 841
AfiI CCNNNNNNNGG 4 cut(s) 584, 732, 774, 900
AflIII ACRYGT 2 cut(s) 619, 692
AgsI TTSAA 2 cut(s) 341, 650
AjiI CACGTC 1 cut(s) 620
AjnI CCWGG 5 cut(s) 22, 637, 725, 790, 898
AluBI AGCT 3 cut(s) 410, 596, 942
AluI AGCT 3 cut(s) 410, 596, 942
Alw21I GWGCWC 1 cut(s) 598
AlwI GGATC 2 cut(s) 371, 520
ApeKI GCWGC 2 cut(s) 251, 739
ApoI RAATTY 1 cut(s) 461
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 896
AsuHPI GGTGA 2 cut(s) 674, 818
AvaII GGWCC 1 cut(s) 896
BanII GRGCYC 1 cut(s) 598
BauI CACGAG 2 cut(s) 438, 608
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 263, 726
BccI CCATC 5 cut(s) 442, 578, 803, 853, 902
BciT130I CCWGG 5 cut(s) 24, 639, 727, 792, 900
BclI TGATCA 1 cut(s) 402
BfaI CTAG 3 cut(s) 303, 393, 548
BglII AGATCT 2 cut(s) 40, 493
BisI GCNGC 2 cut(s) 252, 740
BlsI GCNGC 2 cut(s) 253, 741
Bme1390I CCNGG 5 cut(s) 24, 639, 727, 792, 900
Bme18I GGWCC 1 cut(s) 896
BmgBI CACGTC 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 896
BmrFI CCNGG 5 cut(s) 24, 639, 727, 792, 900
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 622
BpuEI CTTGAG 1 cut(s) 906
BsaJI CCNNGG 5 cut(s) 637, 680, 726, 791, 899
BsaWI WCCGGW 1 cut(s) 893
BsaXI ACNNNNNCTCC 4 cut(s) 483, 513, 646, 676
Bsc4I CCNNNNNNNGG 4 cut(s) 584, 732, 774, 900
Bse1I ACTGG 5 cut(s) 9, 130, 274, 293, 514
Bse3DI GCAATG 1 cut(s) 380
BseBI CCWGG 5 cut(s) 24, 639, 727, 792, 900
BseDI CCNNGG 5 cut(s) 637, 680, 726, 791, 899
BseGI GGATG 3 cut(s) 529, 864, 868
BseLI CCNNNNNNNGG 4 cut(s) 584, 732, 774, 900
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 785
BseNI ACTGG 5 cut(s) 9, 130, 274, 293, 514
BseRI GAGGAG 2 cut(s) 321, 606
BseXI GCAGC 2 cut(s) 263, 726
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 1 cut(s) 894
BslI CCNNNNNNNGG 4 cut(s) 584, 732, 774, 900
BsmI GAATGC 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 7 cut(s) 40, 319, 363, 402, 493, 512, 604
BspACI CCGC 4 cut(s) 533, 782, 796, 825
BspCNI CTCAG 1 cut(s) 784
BspPI GGATC 2 cut(s) 371, 520
BspQI GCTCTTC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 380
BsrI ACTGG 5 cut(s) 9, 130, 274, 293, 514
BssECI CCNNGG 5 cut(s) 637, 680, 726, 791, 899
BssMI GATC 7 cut(s) 40, 319, 363, 402, 493, 512, 604
BssSI CACGAG 2 cut(s) 438, 608
Bst2BI CACGAG 2 cut(s) 438, 608
Bst2UI CCWGG 5 cut(s) 24, 639, 727, 792, 900
Bst4CI ACNGT 3 cut(s) 134, 329, 839
Bst6I CTCTTC 6 cut(s) 108, 241, 336, 583, 681, 769
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 599, 771
BstDSI CCRYGG 1 cut(s) 680
BstEII GGTNACC 1 cut(s) 662
BstF5I GGATG 3 cut(s) 529, 864, 868
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 7 cut(s) 43, 322, 366, 405, 496, 515, 607
BstMBI GATC 7 cut(s) 40, 319, 363, 402, 493, 512, 604
BstMWI GCNNNNNNNGC 2 cut(s) 182, 539
BstNI CCWGG 5 cut(s) 24, 639, 727, 792, 900
BstNSI RCATGY 2 cut(s) 8, 696
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 5 cut(s) 22, 637, 725, 790, 898
BstV1I GCAGC 2 cut(s) 263, 726
BstV2I GAAGAC 1 cut(s) 622
BstX2I RGATCY 3 cut(s) 40, 493, 512
BstYI RGATCY 3 cut(s) 40, 493, 512
BtgI CCRYGG 1 cut(s) 680
BtrI CACGTC 1 cut(s) 620
BtsCI GGATG 3 cut(s) 529, 864, 868
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 507
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 507
Cfr13I GGNCC 1 cut(s) 896
CsiI ACCWGGT 1 cut(s) 22
Csp6I GTAC 5 cut(s) 165, 290, 300, 696, 840
CviAII CATG 3 cut(s) 5, 400, 693
CviJI RGCY 8 cut(s) 54, 410, 479, 542, 596, 635, 739, 942
CviKI_1 RGCY 8 cut(s) 54, 410, 479, 542, 596, 635, 739, 942
CviQI GTAC 5 cut(s) 165, 290, 300, 696, 840
DdeI CTNAG 2 cut(s) 599, 771
DpnI GATC 7 cut(s) 42, 321, 365, 404, 495, 514, 606
DpnII GATC 7 cut(s) 40, 319, 363, 402, 493, 512, 604
DrdI GACNNNNNNGTC 1 cut(s) 728
DseDI GACNNNNNNGTC 1 cut(s) 728
Eam1104I CTCTTC 6 cut(s) 108, 241, 336, 583, 681, 769
EarI CTCTTC 6 cut(s) 108, 241, 336, 583, 681, 769
EciI GGCGGA 1 cut(s) 811
Ecl136II GAGCTC 1 cut(s) 596
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 896
Eco53kI GAGCTC 1 cut(s) 596
Eco91I GGTNACC 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 662
EcoRII CCWGG 5 cut(s) 22, 637, 725, 790, 898
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 598
FaeI CATG 3 cut(s) 8, 403, 696
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 3 cut(s) 4, 399, 692
FauI CCCGC 2 cut(s) 526, 818
FbaI TGATCA 1 cut(s) 402
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 2 cut(s) 252, 740
FokI GGATG 3 cut(s) 536, 871, 875
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 2 cut(s) 252, 740
FspBI CTAG 3 cut(s) 303, 393, 548
GlaI GCGC 1 cut(s) 506
GluI GCNGC 2 cut(s) 252, 740
GsaI CCCAGC 1 cut(s) 238
HapII CCGG 1 cut(s) 894
HhaI GCGC 1 cut(s) 507
Hin1II CATG 3 cut(s) 8, 403, 696
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 3 cut(s) 123, 562, 721
HindII GTYRAC 3 cut(s) 123, 562, 721
HinfI GANTC 3 cut(s) 71, 198, 722
HpaI GTTAAC 1 cut(s) 123
HpaII CCGG 1 cut(s) 894
HphI GGTGA 2 cut(s) 674, 818
Hpy166II GTNNAC 6 cut(s) 123, 422, 562, 721, 835, 868
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 6 cut(s) 62, 139, 438, 608, 746, 923
Hpy8I GTNNAC 6 cut(s) 123, 422, 562, 721, 835, 868
Hpy99I CGWCG 3 cut(s) 107, 849, 877
HpyAV CCTTC 2 cut(s) 482, 679
HpyCH4III ACNGT 3 cut(s) 134, 329, 839
HpyCH4IV ACGT 2 cut(s) 288, 619
HpyCH4V TGCA 4 cut(s) 4, 176, 349, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 539
HpyF3I CTNAG 2 cut(s) 599, 771
HpySE526I ACGT 2 cut(s) 288, 619
Hsp92II CATG 3 cut(s) 8, 403, 696
HspAI GCGC 1 cut(s) 505
Ksp22I TGATCA 1 cut(s) 402
KspAI GTTAAC 1 cut(s) 123
Kzo9I GATC 7 cut(s) 40, 319, 363, 402, 493, 512, 604
LguI GCTCTTC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 593
Lsp1109I GCAGC 2 cut(s) 263, 726
LweI GCATC 1 cut(s) 336
MabI ACCWGGT 1 cut(s) 22
MaeI CTAG 3 cut(s) 303, 393, 548
MaeII ACGT 2 cut(s) 288, 619
MaeIII GTNAC 3 cut(s) 323, 662, 812
MalI GATC 7 cut(s) 42, 321, 365, 404, 495, 514, 606
MboI GATC 7 cut(s) 40, 319, 363, 402, 493, 512, 604
MboII GAAGA 7 cut(s) 125, 258, 353, 600, 627, 668, 756
MflI RGATCY 3 cut(s) 40, 493, 512
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 2 cut(s) 107, 461
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 6 cut(s) 57, 212, 299, 441, 584, 706
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 122, 215, 381, 444, 483
MspI CCGG 1 cut(s) 894
MspR9I CCNGG 5 cut(s) 24, 639, 727, 792, 900
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 5 cut(s) 24, 639, 727, 792, 900
MwoI GCNNNNNNNGC 2 cut(s) 182, 539
NdeII GATC 7 cut(s) 40, 319, 363, 402, 493, 512, 604
NlaIII CATG 3 cut(s) 8, 403, 696
NmuCI GTSAC 1 cut(s) 662
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 696
PaeI GCATGC 1 cut(s) 8
PciI ACATGT 1 cut(s) 692
PciSI GCTCTTC 1 cut(s) 241
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 2 cut(s) 71, 198
PkrI GCNGC 2 cut(s) 253, 741
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
PscI ACATGT 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 598
Psp6I CCWGG 5 cut(s) 22, 637, 725, 790, 898
PspEI GGTNACC 1 cut(s) 662
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 5 cut(s) 22, 637, 725, 790, 898
PspPI GGNCC 1 cut(s) 896
PsuI RGATCY 3 cut(s) 40, 493, 512
RsaI GTAC 5 cut(s) 166, 291, 301, 697, 841
RsaNI GTAC 5 cut(s) 165, 290, 300, 696, 840
SacI GAGCTC 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 5 cut(s) 122, 215, 381, 444, 483
SatI GCNGC 2 cut(s) 252, 740
Sau3AI GATC 7 cut(s) 40, 319, 363, 402, 493, 512, 604
Sau96I GGNCC 1 cut(s) 896
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 5 cut(s) 24, 639, 727, 792, 900
SduI GDGCHC 1 cut(s) 598
SexAI ACCWGGT 1 cut(s) 22
SfaNI GCATC 1 cut(s) 336
SinI GGWCC 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 921
SmoI CTYRAG 1 cut(s) 921
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 107, 461
SsiI CCGC 4 cut(s) 533, 782, 796, 825
SspMI CTAG 3 cut(s) 303, 393, 548
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 5 cut(s) 22, 637, 725, 790, 898
TaaI ACNGT 3 cut(s) 134, 329, 839
TaiI ACGT 2 cut(s) 291, 622
TaqI TCGA 4 cut(s) 61, 102, 624, 745
TasI AATT 2 cut(s) 107, 461
TfiI GAWTC 2 cut(s) 71, 198
Tru1I TTAA 5 cut(s) 122, 215, 381, 444, 483
Tru9I TTAA 5 cut(s) 122, 215, 381, 444, 483
TscAI CASTG 2 cut(s) 178, 514
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 2 cut(s) 251, 739
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 2 cut(s) 667, 697
TspRI CASTG 2 cut(s) 178, 514
VpaK11BI GGWCC 1 cut(s) 896
XapI RAATTY 1 cut(s) 461
XceI RCATGY 2 cut(s) 8, 696
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 3 cut(s) 303, 393, 548
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.