MD00G1079900.v1.1

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0002214
Physical Location & Seq
Reverse (-)
16026281 .. 16027695
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1079900.v1.1.491

Sequence Viewer

Length: 306 bp
ATGTGTCGGAAGCAACCTGGAATAGCTATTGGAAGGTTGTGTGAAAAGTGCGACGGTAAGTGTGTAATTTGTGACTCTTATGTGCGCCCTTGCACGCTTGTTCGGGTTTGCGATGAGTGCAACTATGGATCTTTCCAGGGAAGGTGTGTTATTTGTGGAGGGGTTGGAATTTCTGATGCTTATTACTGCAAAGAGTGTACTCAGCAGGAGAAAGATAGAGATGGCTGCCCGAAAATTGTGAATCTGGGAAGTGCCAAAACAGATCTGTTCTATGAACGCAAAAAGTATGGTTTCAAGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

102

Amino Acids

11.37

Weight (kDa)

8.8

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 95 4.4e-44 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 2 cut(s) 16, 135
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 168
AspLEI GCGC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 212
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 2 cut(s) 18, 137
BglII AGATCT 1 cut(s) 262
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 18, 137
BmrFI CCNGG 2 cut(s) 18, 137
BmsI GCATC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 18, 137
BseDI CCNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 212
Bsp143I GATC 2 cut(s) 128, 262
BspCNI CTCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 128, 262
Bst2UI CCWGG 2 cut(s) 18, 137
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 131, 265
BstMBI GATC 2 cut(s) 128, 262
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 2 cut(s) 18, 137
BstSCI CCNGG 2 cut(s) 16, 135
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 2 cut(s) 128, 262
BstYI RGATCY 2 cut(s) 128, 262
BtgZI GCGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 198
CviJI RGCY 2 cut(s) 26, 225
CviKI_1 RGCY 2 cut(s) 26, 225
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 130, 264
DpnII GATC 2 cut(s) 128, 262
EcoRII CCWGG 2 cut(s) 16, 135
FaiI YATR 4 cut(s) 81, 126, 273, 288
Fnu4HI GCNGC 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 226
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 2 cut(s) 74, 241
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 2 cut(s) 9, 175
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 198
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 27, 135
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 93, 120, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 201
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 128, 262
LpnPI CCDG 6 cut(s) 3, 30, 122, 149, 191, 230
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 130, 264
MboI GATC 2 cut(s) 128, 262
MflI RGATCY 2 cut(s) 128, 262
MluCI AATT 3 cut(s) 66, 168, 234
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 18, 137
MvaI CCWGG 2 cut(s) 18, 137
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 2 cut(s) 128, 262
NmuCI GTSAC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 16, 135
PspGI CCWGG 2 cut(s) 16, 135
PsuI RGATCY 2 cut(s) 128, 262
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 128, 262
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 18, 137
SetI ASST 4 cut(s) 19, 28, 38, 146
SfaNI GCATC 1 cut(s) 166
Sse9I AATT 3 cut(s) 66, 168, 234
StyD4I CCNGG 2 cut(s) 16, 135
TaaI ACNGT 1 cut(s) 56
TasI AATT 3 cut(s) 66, 168, 234
TatI WGTACW 1 cut(s) 197
TfiI GAWTC 1 cut(s) 241
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 288
XapI RAATTY 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.