MD12G1169600.v1.1

PHF5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0002214
Physical Location & Seq
Reverse (-)
25068078 .. 25071118
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1169600.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGCGAAGCATCATCCTGACCTGATTATGTGCTGGAAGCAACCTGGAATAGCTATTGGAAGGTTGTGTGAAAAGTGCGACGGTAAGTGTGTAATTTGTGACTCTTATGTGTGTCCTTGCACACTTGTTCTGGTTTGCGATGAGTGCAACTATGGATCTTTCCATGGAAGGTGTGTTATTTGTGGAGGGGTTGGAATTTCTTATGCTTATTACTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGAGATGGGTGCCCAAAAATTGTGAATCTGGGAAGTGCCAAAACAGATCTGTTCTATGAATGGAAAAAGTATGGTTTCAAGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

111

Amino Acids

12.44

Weight (kDa)

8.36

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 1.6e-46 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 1 cut(s) 226
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 252
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 45
BglII AGATCT 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 2 cut(s) 155, 289
Bsp19I CCATGG 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 254
BspPI GGATC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 155, 289
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 2 cut(s) 158, 292
BstMBI GATC 2 cut(s) 155, 289
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 155, 289
BstYI RGATCY 2 cut(s) 155, 289
BtgI CCRYGG 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 13
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 164
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 157, 291
DpnII GATC 2 cut(s) 155, 289
Eco130I CCWWGG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 167
FaiI YATR 7 cut(s) 29, 108, 153, 165, 204, 300, 315
FatI CATG 1 cut(s) 163
Hin1II CATG 1 cut(s) 167
HinfI GANTC 2 cut(s) 101, 268
Hpy166II GTNNAC 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 17, 322
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 54, 162
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 3 cut(s) 120, 147, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 2 cut(s) 155, 289
LpnPI CCDG 8 cut(s) 19, 30, 30, 35, 57, 116, 218, 257
LweI GCATC 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 157, 291
MboI GATC 2 cut(s) 155, 289
MflI RGATCY 2 cut(s) 155, 289
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 3 cut(s) 93, 195, 261
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 144
NcoI CCATGG 1 cut(s) 163
NdeII GATC 2 cut(s) 155, 289
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 268
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 254
PsuI RGATCY 2 cut(s) 155, 289
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 155, 289
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 257
SetI ASST 5 cut(s) 24, 46, 55, 65, 173
SfaNI GCATC 1 cut(s) 19
Sse9I AATT 3 cut(s) 93, 195, 261
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 83
TasI AATT 3 cut(s) 93, 195, 261
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 1 cut(s) 268
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 315
XapI RAATTY 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.