Rh7DG440000

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002214
Physical Location & Seq
Reverse (-)
62564635 .. 62565601
967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG440000.1

Sequence Viewer

Length: 339 bp
ATGGCAGCGAAGCATCATCCAGACTTGATAATGTGTCGAAAGCAAACGGGAATAGCAATTGGAAGATTGTGCGAAAAGTGTGATGGTAAGTGTGTGCTGTGCGATTCTATGGTACGTCCTTGCACTCTAGTTCGGATCTGCGATCAGTGCAACTATGGATCGTTCCAAGGGCGGTGTGTCGTGTGTGGAGGGGTTGGAATTTCTGATGCTTATTATTGTAAAGAGTGTAGTCAGCTGGAAAAGGATAGAGATGGGTGTCCTAAAATTGTGAATTTGGGAACTGCAAGAACGGATCTATTTTATGAAAGCAAAAAATATGGTTTCAAAAAAAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

112

Amino Acids

12.5

Weight (kDa)

8.8

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 3 - 105 3.1e-47 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 3 cut(s) 143, 166, 300
AcsI RAATTY 2 cut(s) 198, 271
AfaI GTAC 1 cut(s) 114
AgsI TTSAA 1 cut(s) 325
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
AlwI GGATC 3 cut(s) 143, 166, 300
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 198, 271
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 77, 245
BfaI CTAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmsI GCATC 2 cut(s) 22, 196
BsaJI CCNNGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 135, 142, 158, 292
BspACI CCGC 1 cut(s) 172
BspPI GGATC 3 cut(s) 143, 166, 300
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 4 cut(s) 135, 142, 158, 292
BssT1I CCWWGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 4 cut(s) 138, 145, 161, 295
BstMBI GATC 4 cut(s) 135, 142, 158, 292
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 135, 292
BstYI RGATCY 2 cut(s) 135, 292
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 152
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 336
CviJI RGCY 1 cut(s) 235
CviKI_1 RGCY 1 cut(s) 235
CviQI GTAC 1 cut(s) 113
DpnI GATC 4 cut(s) 137, 144, 160, 294
DpnII GATC 4 cut(s) 135, 142, 158, 292
Eco130I CCWWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 339
FaiI YATR 5 cut(s) 110, 156, 303, 318, 337
FatI CATG 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 3
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 339
HinfI GANTC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 135, 205
Hpy188III TCNNGA 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 123, 150, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 1 cut(s) 339
Kzo9I GATC 4 cut(s) 135, 142, 158, 292
LpnPI CCDG 2 cut(s) 33, 221
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 22, 196
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 115
MalI GATC 4 cut(s) 137, 144, 160, 294
MboI GATC 4 cut(s) 135, 142, 158, 292
MboII GAAGA 1 cut(s) 75
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 2 cut(s) 135, 292
MluCI AATT 4 cut(s) 57, 198, 264, 271
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 235
MunI CAATTG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 4 cut(s) 135, 142, 158, 292
NlaIII CATG 1 cut(s) 339
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 7
PsuI RGATCY 2 cut(s) 135, 292
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 135, 142, 158, 292
SetI ASST 2 cut(s) 118, 237
SfaNI GCATC 2 cut(s) 22, 196
SgeI CNNG 9 cut(s) 32, 37, 60, 132, 140, 179, 193, 248, 297
Sse9I AATT 4 cut(s) 57, 198, 264, 271
SsiI CCGC 1 cut(s) 172
SspMI CTAG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 166
TaiI ACGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 37
TasI AATT 4 cut(s) 57, 198, 264, 271
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 1 cut(s) 152
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 152
XapI RAATTY 2 cut(s) 198, 271
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.