pycom11g05980

PHD finger-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002214
Physical Location & Seq
Forward (+)
4598483 .. 4598788
306 bp
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UTR
Exon/CDS
Intron
pycom11g05980.1

Sequence Viewer

Length: 306 bp
ATGTGCCGGAAACAACCGGGGATCGCCATTGGACGGCTTTGCGAGAAGTGTGATGGCAAGTGTGTGGTCTGCGACTCCTACGTCCGTCCTTGCACGCTTGTGAGGGTTTGTGATGAATGCAACTACGGATCTTTCCAAGGCCGGTGTGTAATCTGCGGCGGGGTTGGAATTTCCGATGCCTACTATTGCAAAGAGTGTACGCAGCAGGAGAAGGATAGGGATGGATGTCCAAAGATTGTGAATTTAGGTAGTGCGAAAACCGACCTCTTTTACGAACGCAAGAAATATGGCTTTAAGAAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

102

Amino Acids

11.36

Weight (kDa)

8.8

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 95 6.9e-44 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AciI CCGC 2 cut(s) 156, 159
AclWI GGATC 2 cut(s) 29, 136
AcsI RAATTY 2 cut(s) 168, 241
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 33
AleI CACNNNNGTG 1 cut(s) 98
AlwI GGATC 2 cut(s) 29, 136
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 2 cut(s) 168, 241
AsuC2I CCSGG 1 cut(s) 18
BbvI GCAGC 1 cut(s) 214
BccI CCATC 2 cut(s) 47, 215
BceAI ACGGC 1 cut(s) 50
BcnI CCSGG 1 cut(s) 18
BisI GCNGC 2 cut(s) 157, 203
BlsI GCNGC 2 cut(s) 158, 204
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 17, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 17, 136
BseGI GGATG 2 cut(s) 226, 230
BseLI CCNNNNNNNGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 214
BshFI GGCC 1 cut(s) 141
BsiSI CCGG 3 cut(s) 7, 17, 142
BslI CCNNNNNNNGG 1 cut(s) 33
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 21, 128
BspACI CCGC 2 cut(s) 156, 159
BspANI GGCC 1 cut(s) 141
BspPI GGATC 2 cut(s) 29, 136
BsrFI RCCGGY 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 17, 136
BssMI GATC 2 cut(s) 21, 128
BssT1I CCWWGG 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 2 cut(s) 226, 230
BstKTI GATC 2 cut(s) 24, 131
BstMBI GATC 2 cut(s) 21, 128
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 2 cut(s) 226, 230
Cac8I GCNNGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 141
Csp6I GTAC 1 cut(s) 198
CviJI RGCY 3 cut(s) 37, 141, 291
CviKI_1 RGCY 3 cut(s) 37, 141, 291
CviQI GTAC 1 cut(s) 198
DpnI GATC 2 cut(s) 23, 130
DpnII GATC 2 cut(s) 21, 128
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaiI YATR 1 cut(s) 288
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 2 cut(s) 157, 203
FokI GGATG 2 cut(s) 233, 237
Fsp4HI GCNGC 2 cut(s) 157, 203
GluI GCNGC 2 cut(s) 157, 203
HaeIII GGCC 1 cut(s) 141
HapII CCGG 3 cut(s) 7, 17, 142
HinfI GANTC 1 cut(s) 74
HpaII CCGG 3 cut(s) 7, 17, 142
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 93, 120, 189
HpySE526I ACGT 1 cut(s) 81
Kzo9I GATC 2 cut(s) 21, 128
LpnPI CCDG 4 cut(s) 20, 30, 155, 191
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 23, 130
MboI GATC 2 cut(s) 21, 128
MflI RGATCY 1 cut(s) 128
MluCI AATT 2 cut(s) 168, 241
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 2 cut(s) 96, 275
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 3 cut(s) 7, 17, 142
MspR9I CCNGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 18
NdeII GATC 2 cut(s) 21, 128
OliI CACNNNNGTG 1 cut(s) 98
PctI GAATGC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 158, 204
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 157, 203
Sau3AI GATC 2 cut(s) 21, 128
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 18
SetI ASST 3 cut(s) 84, 250, 267
SfaNI GCATC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 2 cut(s) 168, 241
SsiI CCGC 2 cut(s) 156, 159
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 136
TaiI ACGT 1 cut(s) 84
TasI AATT 2 cut(s) 168, 241
TauI GCSGC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 2 cut(s) 74, 141
XapI RAATTY 2 cut(s) 168, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.