RLG00000024832

PHF5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002214
Physical Location & Seq
Reverse (-)
39497019 .. 39497885
867 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024832

Sequence Viewer

Length: 429 bp
ATGGCAAAGCATCATCCTGACCTGATTATGTGCCGGAAACAACCAGGAATAGCTATTGGAAGGTTGTGCGAAAAGTGTGATGGTAAGTGTGTGATCTGTGACTCCTATGTGCGTCCCTGCACACTGGTTAGGGTCTGCGATGAGTGCAACTACGGATCCTTCCAGGGACGGTGTGTTATCTGTGGAGGTGTTGGAATTTCTGATGCTTATTACTGCAAAGAGTGTACTCAGCAGGAGAAAGATAGAGATGGGTGTCCAAAAATTGTGAATCTGGGAAGTGCCAAAACAGATTTATTCTATGAACGGAAGAAGTACGGTTCAAAGTTTTGCAGTATTCAATCCCACACCAGACGTGCGATTTTAGAGTCCGTCGATAAACTTACCAATTTCTCTGTTACAAATGTATATCTTTGTCCAGATGCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PHF5

Protein Analysis

143

Amino Acids

15.89

Weight (kDa)

8.48

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 1.7e-49 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 150, 163
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 2 cut(s) 226, 314
AgsI TTSAA 2 cut(s) 321, 338
AjiI CACGTC 1 cut(s) 353
AjnI CCWGG 2 cut(s) 43, 162
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 2 cut(s) 150, 163
ApoI RAATTY 1 cut(s) 195
BamHI GGATCC 1 cut(s) 155
BccI CCATC 2 cut(s) 74, 242
BciT130I CCWGG 2 cut(s) 45, 164
BfaI CTAG 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 45, 164
BmgBI CACGTC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 45, 164
BmsI GCATC 3 cut(s) 19, 193, 409
BsaJI CCNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 45, 164
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 99, 180
BsmFI GGGAC 2 cut(s) 99, 180
Bsp143I GATC 2 cut(s) 93, 155
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 2 cut(s) 150, 163
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 93, 155
Bst2UI CCWGG 2 cut(s) 45, 164
Bst4CI ACNGT 2 cut(s) 171, 317
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 2 cut(s) 96, 158
BstMBI GATC 2 cut(s) 93, 155
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 2 cut(s) 45, 164
BstSCI CCNGG 2 cut(s) 43, 162
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 122
CseI GACGC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 225, 313
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
CviQI GTAC 2 cut(s) 225, 313
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 95, 157
DpnII GATC 2 cut(s) 93, 155
EcoRII CCWGG 2 cut(s) 43, 162
FaiI YATR 4 cut(s) 29, 108, 300, 406
FaqI GGGAC 2 cut(s) 99, 180
FspBI CTAG 1 cut(s) 427
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 101
HinfI GANTC 3 cut(s) 101, 268, 365
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 17, 416
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 2 cut(s) 54, 169
HpyCH4III ACNGT 2 cut(s) 171, 317
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 5 cut(s) 120, 147, 216, 330, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 352
Kzo9I GATC 2 cut(s) 93, 155
LweI GCATC 3 cut(s) 19, 193, 409
MaeI CTAG 1 cut(s) 427
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 98, 394
MalI GATC 2 cut(s) 95, 157
MboI GATC 2 cut(s) 93, 155
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 195, 261, 385
MlyI GAGTC 2 cut(s) 95, 374
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 179
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 45, 164
MvaI CCWGG 2 cut(s) 45, 164
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 2 cut(s) 93, 155
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 268
PleI GAGTC 2 cut(s) 95, 373
PpsI GAGTC 2 cut(s) 95, 373
Psp6I CCWGG 2 cut(s) 43, 162
PspGI CCWGG 2 cut(s) 43, 162
PspN4I GGNNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 2 cut(s) 226, 314
RsaNI GTAC 2 cut(s) 225, 313
Sau3AI GATC 2 cut(s) 93, 155
SchI GAGTC 2 cut(s) 95, 374
ScrFI CCNGG 2 cut(s) 45, 164
SetI ASST 5 cut(s) 24, 55, 65, 190, 355
SfaNI GCATC 3 cut(s) 19, 193, 409
Sse9I AATT 3 cut(s) 195, 261, 385
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 43, 162
TaaI ACNGT 2 cut(s) 171, 317
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 372
TasI AATT 3 cut(s) 195, 261, 385
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 3 cut(s) 168, 319, 358
TspRI CASTG 1 cut(s) 129
XapI RAATTY 1 cut(s) 195
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.