Ulp1 protease family, C-terminal catalytic domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09730 AT1G09730 |
| fragaria_vesca | FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 |
| malus_domestica | MD08G1197400.v1.1 MD15G1385000.v1.1 |
| prunus_persica | Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 |
| pyrus_communis | pycom08g16950 pycom08g16970 pycom15g34500 |
| rosa_chinensis | RchiOBHm_Chr7g0236781 |
| rosa_laevigata | RLG00000001062 |
| rosa_multiflora | Rmu_sc0003720.1_g000028 |
| rosa_roxburghii | Rroxscaffold_3G00224860 |
| rosa_rugosa | Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200 |
| rosa_samantha | Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100 |
| rosa_wichuraiana | Rw7G037660 Rw7G037720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 824 |
| AbsI | CCTCGAGG | 1 cut(s) | 1163 |
| Acc65I | GGTACC | 1 cut(s) | 990 |
| AccB1I | GGYRCC | 1 cut(s) | 990 |
| AccIII | TCCGGA | 1 cut(s) | 1422 |
| AciI | CCGC | 4 cut(s) | 495, 816, 1079, 1780 |
| AclWI | GGATC | 8 cut(s) | 468, 721, 1442, 2238, 2251, 2266, 2288, 2301 |
| AcoI | YGGCCR | 1 cut(s) | 2843 |
| AcsI | RAATTY | 4 cut(s) | 80, 950, 1020, 1774 |
| AcuI | CTGAAG | 3 cut(s) | 387, 1055, 1887 |
| AfaI | GTAC | 6 cut(s) | 670, 992, 1609, 1641, 1963, 2220 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 379, 2008 |
| AflII | CTTAAG | 2 cut(s) | 808, 848 |
| AflIII | ACRYGT | 3 cut(s) | 154, 1486, 1515 |
| AgeI | ACCGGT | 1 cut(s) | 2001 |
| AjiI | CACGTC | 1 cut(s) | 1174 |
| AjnI | CCWGG | 3 cut(s) | 372, 1588, 2469 |
| AleI | CACNNNNGTG | 1 cut(s) | 1590 |
| Alw21I | GWGCWC | 3 cut(s) | 48, 333, 1305 |
| Alw26I | GTCTC | 6 cut(s) | 1310, 1736, 1792, 2483, 2597, 2614 |
| AlwI | GGATC | 8 cut(s) | 468, 721, 1442, 2238, 2251, 2266, 2288, 2301 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 197, 1274 |
| Ama87I | CYCGRG | 1 cut(s) | 1163 |
| Aor13HI | TCCGGA | 1 cut(s) | 1422 |
| AoxI | GGCC | 3 cut(s) | 1097, 1828, 2843 |
| ApeKI | GCWGC | 9 cut(s) | 59, 866, 1126, 1309, 1475, 1840, 2097, 2198, 2834 |
| ApoI | RAATTY | 4 cut(s) | 80, 950, 1020, 1774 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1520, 1552 |
| AseI | ATTAAT | 1 cut(s) | 1353 |
| AsiGI | ACCGGT | 1 cut(s) | 2001 |
| Asp718I | GGTACC | 1 cut(s) | 990 |
| AspLEI | GCGC | 1 cut(s) | 757 |
| AspS9I | GGNCC | 1 cut(s) | 179 |
| AsuC2I | CCSGG | 1 cut(s) | 1142 |
| AsuHPI | GGTGA | 4 cut(s) | 540, 1274, 1604, 2372 |
| AsuII | TTCGAA | 1 cut(s) | 2513 |
| AvaI | CYCGRG | 1 cut(s) | 1163 |
| AvaII | GGWCC | 1 cut(s) | 179 |
| BamHI | GGATCC | 2 cut(s) | 2243, 2293 |
| BanI | GGYRCC | 1 cut(s) | 990 |
| BanII | GRGCYC | 3 cut(s) | 48, 1305, 2673 |
| BbsI | GAAGAC | 7 cut(s) | 375, 441, 969, 1062, 2292, 2490, 2553 |
| Bbv12I | GWGCWC | 3 cut(s) | 48, 333, 1305 |
| BbvCI | CCTCAGC | 1 cut(s) | 2874 |
| BbvI | GCAGC | 9 cut(s) | 71, 853, 1113, 1321, 1462, 1827, 2109, 2185, 2821 |
| BccI | CCATC | 4 cut(s) | 1459, 1460, 2710, 2875 |
| BceAI | ACGGC | 2 cut(s) | 2039, 2858 |
| BciT130I | CCWGG | 3 cut(s) | 374, 1590, 2471 |
| BclI | TGATCA | 2 cut(s) | 1008, 2794 |
| BcnI | CCSGG | 1 cut(s) | 1142 |
| BcoDI | GTCTC | 6 cut(s) | 1310, 1736, 1792, 2483, 2597, 2614 |
| BfaI | CTAG | 5 cut(s) | 93, 491, 875, 1616, 1697 |
| BfmI | CTRYAG | 2 cut(s) | 57, 207 |
| BfrI | CTTAAG | 2 cut(s) | 808, 848 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 492 |
| BglII | AGATCT | 2 cut(s) | 1612, 2174 |
| BisI | GCNGC | 9 cut(s) | 60, 867, 1127, 1310, 1476, 1841, 2098, 2199, 2835 |
| BlsI | GCNGC | 9 cut(s) | 61, 868, 1128, 1311, 1477, 1842, 2099, 2200, 2836 |
| Bme1390I | CCNGG | 4 cut(s) | 374, 1142, 1590, 2471 |
| Bme18I | GGWCC | 1 cut(s) | 179 |
| BmeT110I | CYCGRG | 1 cut(s) | 1163 |
| BmgBI | CACGTC | 1 cut(s) | 1174 |
| BmgT120I | GGNCC | 1 cut(s) | 179 |
| BmiI | GGNNCC | 6 cut(s) | 992, 1676, 2245, 2295, 2456, 2805 |
| BmrFI | CCNGG | 4 cut(s) | 374, 1142, 1590, 2471 |
| BmsI | GCATC | 9 cut(s) | 138, 313, 878, 906, 1261, 1958, 2084, 2415, 2441 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2589 |
| BpiI | GAAGAC | 7 cut(s) | 375, 441, 969, 1062, 2292, 2490, 2553 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 464, 496, 2069, 2101, 2594, 2626 |
| BpmI | CTGGAG | 3 cut(s) | 1585, 1871, 2406 |
| Bpu10I | CCTNAGC | 2 cut(s) | 261, 2874 |
| Bpu14I | TTCGAA | 1 cut(s) | 2513 |
| BpuEI | CTTGAG | 2 cut(s) | 634, 1814 |
| BpuMI | CCSGG | 1 cut(s) | 1142 |
| Bsa29I | ATCGAT | 1 cut(s) | 622 |
| BsaAI | YACGTR | 1 cut(s) | 1487 |
| BsaBI | GATNNNNATC | 3 cut(s) | 393, 459, 2793 |
| BsaI | GGTCTC | 1 cut(s) | 2597 |
| BsaJI | CCNNGG | 7 cut(s) | 406, 1588, 1944, 2458, 2469, 2628, 2846 |
| BsaWI | WCCGGW | 3 cut(s) | 109, 1422, 2001 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2407, 2437 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 379, 2008 |
| Bse118I | RCCGGY | 1 cut(s) | 2001 |
| Bse1I | ACTGG | 7 cut(s) | 570, 1568, 1934, 2032, 2048, 2362, 2869 |
| Bse3DI | GCAATG | 3 cut(s) | 151, 778, 898 |
| Bse8I | GATNNNNATC | 3 cut(s) | 393, 459, 2793 |
| BseAI | TCCGGA | 1 cut(s) | 1422 |
| BseBI | CCWGG | 3 cut(s) | 374, 1590, 2471 |
| BseCI | ATCGAT | 1 cut(s) | 622 |
| BseDI | CCNNGG | 7 cut(s) | 406, 1588, 1944, 2458, 2469, 2628, 2846 |
| BseGI | GGATG | 9 cut(s) | 129, 566, 774, 869, 1045, 1174, 1249, 1630, 1756 |
| BseJI | GATNNNNATC | 3 cut(s) | 393, 459, 2793 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 379, 2008 |
| BseMI | GCAATG | 3 cut(s) | 151, 778, 898 |
| BseMII | CTCAG | 5 cut(s) | 42, 1030, 2079, 2649, 2865 |
| BseNI | ACTGG | 7 cut(s) | 570, 1568, 1934, 2032, 2048, 2362, 2869 |
| BseRI | GAGGAG | 5 cut(s) | 590, 1079, 1733, 2741, 2891 |
| BseX3I | CGGCCG | 1 cut(s) | 2843 |
| BseXI | GCAGC | 9 cut(s) | 71, 853, 1113, 1321, 1462, 1827, 2109, 2185, 2821 |
| BsgI | GTGCAG | 3 cut(s) | 210, 1826, 2495 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2846 |
| BshFI | GGCC | 3 cut(s) | 1099, 1830, 2845 |
| BshNI | GGYRCC | 1 cut(s) | 990 |
| BshTI | ACCGGT | 1 cut(s) | 2001 |
| BshVI | ATCGAT | 1 cut(s) | 622 |
| BsiEI | CGRYCG | 1 cut(s) | 2846 |
| BsiHKAI | GWGCWC | 3 cut(s) | 48, 333, 1305 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1163 |
| BsiSI | CCGG | 4 cut(s) | 110, 1142, 1423, 2002 |
| BslFI | GGGAC | 1 cut(s) | 2774 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 379, 2008 |
| BsmAI | GTCTC | 6 cut(s) | 1310, 1736, 1792, 2483, 2597, 2614 |
| BsmBI | CGTCTC | 1 cut(s) | 2614 |
| BsmFI | GGGAC | 1 cut(s) | 2774 |
| BsnI | GGCC | 3 cut(s) | 1099, 1830, 2845 |
| Bso31I | GGTCTC | 1 cut(s) | 2597 |
| BsoBI | CYCGRG | 1 cut(s) | 1163 |
| Bsp119I | TTCGAA | 1 cut(s) | 2513 |
| Bsp1286I | GDGCHC | 4 cut(s) | 48, 333, 1305, 2673 |
| Bsp13I | TCCGGA | 1 cut(s) | 1422 |
| Bsp19I | CCATGG | 1 cut(s) | 406 |
| BspACI | CCGC | 4 cut(s) | 495, 816, 1079, 1780 |
| BspANI | GGCC | 3 cut(s) | 1099, 1830, 2845 |
| BspCNI | CTCAG | 5 cut(s) | 43, 1029, 2080, 2650, 2866 |
| BspDI | ATCGAT | 1 cut(s) | 622 |
| BspEI | TCCGGA | 1 cut(s) | 1422 |
| BspHI | TCATGA | 2 cut(s) | 1770, 2569 |
| BspLI | GGNNCC | 6 cut(s) | 992, 1676, 2245, 2295, 2456, 2805 |
| BspMAI | CTGCAG | 1 cut(s) | 61 |
| BspPI | GGATC | 8 cut(s) | 468, 721, 1442, 2238, 2251, 2266, 2288, 2301 |
| BspQI | GCTCTTC | 1 cut(s) | 2661 |
| BspT104I | TTCGAA | 1 cut(s) | 2513 |
| BspT107I | GGYRCC | 1 cut(s) | 990 |
| BspTI | CTTAAG | 2 cut(s) | 808, 848 |
| BspTNI | GGTCTC | 1 cut(s) | 2597 |
| BsrDI | GCAATG | 3 cut(s) | 151, 778, 898 |
| BsrFI | RCCGGY | 1 cut(s) | 2001 |
| BsrI | ACTGG | 7 cut(s) | 570, 1568, 1934, 2032, 2048, 2362, 2869 |
| BssAI | RCCGGY | 1 cut(s) | 2001 |
| BssECI | CCNNGG | 7 cut(s) | 406, 1588, 1944, 2458, 2469, 2628, 2846 |
| BssT1I | CCWWGG | 2 cut(s) | 406, 2458 |
| Bst2UI | CCWGG | 3 cut(s) | 374, 1590, 2471 |
| Bst4CI | ACNGT | 7 cut(s) | 731, 1644, 1826, 2114, 2367, 2608, 2629 |
| Bst6I | CTCTTC | 3 cut(s) | 30, 2452, 2661 |
| BstAFI | CTTAAG | 2 cut(s) | 808, 848 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 197 |
| BstBAI | YACGTR | 1 cut(s) | 1487 |
| BstBI | TTCGAA | 1 cut(s) | 2513 |
| BstC8I | GCNNGC | 5 cut(s) | 48, 198, 488, 539, 2832 |
| BstDEI | CTNAG | 8 cut(s) | 51, 261, 1016, 2088, 2222, 2315, 2658, 2874 |
| BstDSI | CCRYGG | 2 cut(s) | 406, 2628 |
| BstEII | GGTNACC | 1 cut(s) | 1262 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 377 |
| BstF5I | GGATG | 9 cut(s) | 129, 566, 774, 869, 1045, 1174, 1249, 1630, 1756 |
| BstHHI | GCGC | 1 cut(s) | 757 |
| BstMAI | GTCTC | 6 cut(s) | 1310, 1736, 1792, 2483, 2597, 2614 |
| BstMCI | CGRYCG | 1 cut(s) | 2846 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 56, 135, 197, 492, 1105, 1309, 2740 |
| BstNI | CCWGG | 3 cut(s) | 374, 1590, 2471 |
| BstNSI | RCATGY | 3 cut(s) | 675, 1133, 1519 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2589 |
| BstPI | GGTNACC | 1 cut(s) | 1262 |
| BstSCI | CCNGG | 4 cut(s) | 372, 1140, 1588, 2469 |
| BstSFI | CTRYAG | 2 cut(s) | 57, 207 |
| BstV1I | GCAGC | 9 cut(s) | 71, 853, 1113, 1321, 1462, 1827, 2109, 2185, 2821 |
| BstV2I | GAAGAC | 7 cut(s) | 375, 441, 969, 1062, 2292, 2490, 2553 |
| BstX2I | RGATCY | 6 cut(s) | 713, 1447, 1612, 2174, 2243, 2293 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1001 |
| BstYI | RGATCY | 6 cut(s) | 713, 1447, 1612, 2174, 2243, 2293 |
| BstZI | CGGCCG | 1 cut(s) | 2843 |
| Bsu15I | ATCGAT | 1 cut(s) | 622 |
| BsuRI | GGCC | 3 cut(s) | 1099, 1830, 2845 |
| BsuTUI | ATCGAT | 1 cut(s) | 622 |
| BtgI | CCRYGG | 2 cut(s) | 406, 2628 |
| BtrI | CACGTC | 1 cut(s) | 1174 |
| BtsCI | GGATG | 9 cut(s) | 129, 566, 774, 869, 1045, 1174, 1249, 1630, 1756 |
| BtsI | GCAGTG | 1 cut(s) | 2640 |
| BtsIMutI | CAGTG | 6 cut(s) | 300, 577, 1561, 2640, 2655, 2862 |
| Cac8I | GCNNGC | 5 cut(s) | 48, 198, 488, 539, 2832 |
| CaiI | CAGNNNCTG | 2 cut(s) | 197, 1274 |
| CciI | TCATGA | 2 cut(s) | 1770, 2569 |
| CfoI | GCGC | 1 cut(s) | 757 |
| Cfr10I | RCCGGY | 1 cut(s) | 2001 |
| Cfr13I | GGNCC | 1 cut(s) | 179 |
| ClaI | ATCGAT | 1 cut(s) | 622 |
| CseI | GACGC | 1 cut(s) | 2143 |
| Csp6I | GTAC | 6 cut(s) | 669, 991, 1608, 1640, 1962, 2219 |
| CspAI | ACCGGT | 1 cut(s) | 2001 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1491, 1526 |
| CviQI | GTAC | 6 cut(s) | 669, 991, 1608, 1640, 1962, 2219 |
| DdeI | CTNAG | 8 cut(s) | 51, 261, 1016, 2088, 2222, 2315, 2658, 2874 |
| DraI | TTTAAA | 2 cut(s) | 360, 2616 |
| EaeI | YGGCCR | 1 cut(s) | 2843 |
| EagI | CGGCCG | 1 cut(s) | 2843 |
| Eam1104I | CTCTTC | 3 cut(s) | 30, 2452, 2661 |
| EarI | CTCTTC | 3 cut(s) | 30, 2452, 2661 |
| EciI | GGCGGA | 1 cut(s) | 510 |
| Ecl136II | GAGCTC | 2 cut(s) | 46, 1303 |
| EclXI | CGGCCG | 1 cut(s) | 2843 |
| Eco130I | CCWWGG | 2 cut(s) | 406, 2458 |
| Eco24I | GRGCYC | 3 cut(s) | 48, 1305, 2673 |
| Eco31I | GGTCTC | 1 cut(s) | 2597 |
| Eco47I | GGWCC | 1 cut(s) | 179 |
| Eco52I | CGGCCG | 1 cut(s) | 2843 |
| Eco53kI | GAGCTC | 2 cut(s) | 46, 1303 |
| Eco57I | CTGAAG | 3 cut(s) | 387, 1055, 1887 |
| Eco88I | CYCGRG | 1 cut(s) | 1163 |
| Eco91I | GGTNACC | 1 cut(s) | 1262 |
| EcoICRI | GAGCTC | 2 cut(s) | 46, 1303 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 377 |
| EcoO65I | GGTNACC | 1 cut(s) | 1262 |
| EcoRI | GAATTC | 1 cut(s) | 1020 |
| EcoRII | CCWGG | 3 cut(s) | 372, 1588, 2469 |
| EcoT14I | CCWWGG | 2 cut(s) | 406, 2458 |
| EcoT22I | ATGCAT | 2 cut(s) | 861, 2408 |
| EcoT38I | GRGCYC | 3 cut(s) | 48, 1305, 2673 |
| ErhI | CCWWGG | 2 cut(s) | 406, 2458 |
| Esp3I | CGTCTC | 1 cut(s) | 2614 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 28, 791, 823, 1860, 1892 |
| FaqI | GGGAC | 1 cut(s) | 2774 |
| FauNDI | CATATG | 2 cut(s) | 1580, 1656 |
| FbaI | TGATCA | 2 cut(s) | 1008, 2794 |
| Fnu4HI | GCNGC | 9 cut(s) | 60, 867, 1127, 1310, 1476, 1841, 2098, 2199, 2835 |
| FokI | GGATG | 9 cut(s) | 116, 553, 781, 856, 1052, 1181, 1256, 1637, 1763 |
| FriOI | GRGCYC | 3 cut(s) | 48, 1305, 2673 |
| Fsp4HI | GCNGC | 9 cut(s) | 60, 867, 1127, 1310, 1476, 1841, 2098, 2199, 2835 |
| FspBI | CTAG | 5 cut(s) | 93, 491, 875, 1616, 1697 |
| GlaI | GCGC | 1 cut(s) | 756 |
| GluI | GCNGC | 9 cut(s) | 60, 867, 1127, 1310, 1476, 1841, 2098, 2199, 2835 |
| GsuI | CTGGAG | 3 cut(s) | 1585, 1871, 2406 |
| HaeIII | GGCC | 3 cut(s) | 1099, 1830, 2845 |
| HapII | CCGG | 4 cut(s) | 110, 1142, 1423, 2002 |
| HgaI | GACGC | 1 cut(s) | 2143 |
| HhaI | GCGC | 1 cut(s) | 757 |
| Hin6I | GCGC | 1 cut(s) | 755 |
| HinP1I | GCGC | 1 cut(s) | 755 |
| HincII | GTYRAC | 1 cut(s) | 533 |
| HindII | GTYRAC | 1 cut(s) | 533 |
| HindIII | AAGCTT | 4 cut(s) | 136, 610, 639, 1222 |
| HpaII | CCGG | 4 cut(s) | 110, 1142, 1423, 2002 |
| HphI | GGTGA | 4 cut(s) | 540, 1274, 1604, 2372 |
| Hpy166II | GTNNAC | 6 cut(s) | 533, 1500, 1513, 1549, 2347, 2363 |
| Hpy8I | GTNNAC | 6 cut(s) | 533, 1500, 1513, 1549, 2347, 2363 |
| Hpy99I | CGWCG | 2 cut(s) | 2332, 2588 |
| HpyAV | CCTTC | 7 cut(s) | 170, 659, 691, 1030, 1568, 1720, 2473 |
| HpyCH4III | ACNGT | 7 cut(s) | 731, 1644, 1826, 2114, 2367, 2608, 2629 |
| HpyCH4IV | ACGT | 4 cut(s) | 154, 333, 1173, 1486 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 56, 135, 197, 492, 1105, 1309, 2740 |
| HpyF3I | CTNAG | 8 cut(s) | 51, 261, 1016, 2088, 2222, 2315, 2658, 2874 |
| HpySE526I | ACGT | 4 cut(s) | 154, 333, 1173, 1486 |
| HspAI | GCGC | 1 cut(s) | 755 |
| Kpn2I | TCCGGA | 1 cut(s) | 1422 |
| KpnI | GGTACC | 1 cut(s) | 994 |
| Ksp22I | TGATCA | 2 cut(s) | 1008, 2794 |
| LguI | GCTCTTC | 1 cut(s) | 2661 |
| LmnI | GCTCC | 6 cut(s) | 577, 1674, 1852, 1876, 2740, 2803 |
| Lsp1109I | GCAGC | 9 cut(s) | 71, 853, 1113, 1321, 1462, 1827, 2109, 2185, 2821 |
| LweI | GCATC | 9 cut(s) | 138, 313, 878, 906, 1261, 1958, 2084, 2415, 2441 |
| MaeI | CTAG | 5 cut(s) | 93, 491, 875, 1616, 1697 |
| MaeII | ACGT | 4 cut(s) | 154, 333, 1173, 1486 |
| MaeIII | GTNAC | 5 cut(s) | 250, 1262, 2004, 2114, 2318 |
| MfeI | CAATTG | 1 cut(s) | 985 |
| MflI | RGATCY | 6 cut(s) | 713, 1447, 1612, 2174, 2243, 2293 |
| MhlI | GDGCHC | 4 cut(s) | 48, 333, 1305, 2673 |
| MlyI | GAGTC | 7 cut(s) | 62, 221, 275, 1622, 2318, 2599, 2716 |
| MmeI | TCCRAC | 3 cut(s) | 982, 1935, 2761 |
| Mph1103I | ATGCAT | 2 cut(s) | 861, 2408 |
| MroI | TCCGGA | 1 cut(s) | 1422 |
| MslI | CAYNNNNRTG | 3 cut(s) | 228, 1538, 1590 |
| MspA1I | CMGCKG | 2 cut(s) | 62, 818 |
| MspCI | CTTAAG | 2 cut(s) | 808, 848 |
| MspI | CCGG | 4 cut(s) | 110, 1142, 1423, 2002 |
| MspR9I | CCNGG | 4 cut(s) | 374, 1142, 1590, 2471 |
| MunI | CAATTG | 1 cut(s) | 985 |
| MvaI | CCWGG | 3 cut(s) | 374, 1590, 2471 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 56, 135, 197, 492, 1105, 1309, 2740 |
| NciI | CCSGG | 1 cut(s) | 1142 |
| NcoI | CCATGG | 1 cut(s) | 406 |
| NdeI | CATATG | 2 cut(s) | 1580, 1656 |
| NlaIV | GGNNCC | 6 cut(s) | 992, 1676, 2245, 2295, 2456, 2805 |
| NmeAIII | GCCGAG | 2 cut(s) | 1969, 2871 |
| NmuCI | GTSAC | 2 cut(s) | 1262, 2004 |
| NsiI | ATGCAT | 2 cut(s) | 861, 2408 |
| NspI | RCATGY | 3 cut(s) | 675, 1133, 1519 |
| NspV | TTCGAA | 1 cut(s) | 2513 |
| OliI | CACNNNNGTG | 1 cut(s) | 1590 |
| PaeR7I | CTCGAG | 1 cut(s) | 1163 |
| PagI | TCATGA | 2 cut(s) | 1770, 2569 |
| PciI | ACATGT | 1 cut(s) | 1515 |
| PciSI | GCTCTTC | 1 cut(s) | 2661 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1170 |
| PflFI | GACNNNGTC | 1 cut(s) | 731 |
| PinAI | ACCGGT | 1 cut(s) | 2001 |
| PkrI | GCNGC | 9 cut(s) | 61, 868, 1128, 1311, 1477, 1842, 2099, 2200, 2836 |
| PleI | GAGTC | 7 cut(s) | 61, 220, 274, 1622, 2318, 2598, 2715 |
| PpsI | GAGTC | 7 cut(s) | 61, 220, 274, 1622, 2318, 2598, 2715 |
| Ppu21I | YACGTR | 1 cut(s) | 1487 |
| PscI | ACATGT | 1 cut(s) | 1515 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2589 |
| PshBI | ATTAAT | 1 cut(s) | 1353 |
| PsiI | TTATAA | 1 cut(s) | 824 |
| Psp124BI | GAGCTC | 2 cut(s) | 48, 1305 |
| Psp6I | CCWGG | 3 cut(s) | 372, 1588, 2469 |
| PspEI | GGTNACC | 1 cut(s) | 1262 |
| PspGI | CCWGG | 3 cut(s) | 372, 1588, 2469 |
| PspN4I | GGNNCC | 6 cut(s) | 992, 1676, 2245, 2295, 2456, 2805 |
| PspPI | GGNCC | 1 cut(s) | 179 |
| PspXI | VCTCGAGB | 1 cut(s) | 1163 |
| PstI | CTGCAG | 1 cut(s) | 61 |
| PstNI | CAGNNNCTG | 2 cut(s) | 197, 1274 |
| PsuI | RGATCY | 6 cut(s) | 713, 1447, 1612, 2174, 2243, 2293 |
| PsyI | GACNNNGTC | 1 cut(s) | 731 |
| PvuII | CAGCTG | 1 cut(s) | 62 |
| RsaI | GTAC | 6 cut(s) | 670, 992, 1609, 1641, 1963, 2220 |
| RsaNI | GTAC | 6 cut(s) | 669, 991, 1608, 1640, 1962, 2219 |
| RseI | CAYNNNNRTG | 3 cut(s) | 228, 1538, 1590 |
| SacI | GAGCTC | 2 cut(s) | 48, 1305 |
| SapI | GCTCTTC | 1 cut(s) | 2661 |
| SatI | GCNGC | 9 cut(s) | 60, 867, 1127, 1310, 1476, 1841, 2098, 2199, 2835 |
| Sau96I | GGNCC | 1 cut(s) | 179 |
| SchI | GAGTC | 7 cut(s) | 62, 221, 275, 1622, 2318, 2599, 2716 |
| ScrFI | CCNGG | 4 cut(s) | 374, 1142, 1590, 2471 |
| SduI | GDGCHC | 4 cut(s) | 48, 333, 1305, 2673 |
| SfaNI | GCATC | 9 cut(s) | 138, 313, 878, 906, 1261, 1958, 2084, 2415, 2441 |
| SfcI | CTRYAG | 2 cut(s) | 57, 207 |
| Sfr274I | CTCGAG | 1 cut(s) | 1163 |
| SfuI | TTCGAA | 1 cut(s) | 2513 |
| SinI | GGWCC | 1 cut(s) | 179 |
| SlaI | CTCGAG | 1 cut(s) | 1163 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 228, 1538, 1590 |
| SmlI | CTYRAG | 5 cut(s) | 613, 808, 848, 1163, 1793 |
| SmoI | CTYRAG | 5 cut(s) | 613, 808, 848, 1163, 1793 |
| SsiI | CCGC | 4 cut(s) | 495, 816, 1079, 1780 |
| SspI | AATATT | 1 cut(s) | 1983 |
| SspMI | CTAG | 5 cut(s) | 93, 491, 875, 1616, 1697 |
| SstI | GAGCTC | 2 cut(s) | 48, 1305 |
| StyD4I | CCNGG | 4 cut(s) | 372, 1140, 1588, 2469 |
| StyI | CCWWGG | 2 cut(s) | 406, 2458 |
| TaaI | ACNGT | 7 cut(s) | 731, 1644, 1826, 2114, 2367, 2608, 2629 |
| TaiI | ACGT | 4 cut(s) | 157, 336, 1176, 1489 |
| TscAI | CASTG | 6 cut(s) | 307, 577, 1568, 2647, 2662, 2869 |
| TseFI | GTSAC | 2 cut(s) | 1262, 2004 |
| TseI | GCWGC | 9 cut(s) | 59, 866, 1126, 1309, 1475, 1840, 2097, 2198, 2834 |
| Tsp45I | GTSAC | 2 cut(s) | 1262, 2004 |
| TspGWI | ACGGA | 3 cut(s) | 1394, 2286, 2426 |
| TspRI | CASTG | 6 cut(s) | 307, 577, 1568, 2647, 2662, 2869 |
| Tth111I | GACNNNGTC | 1 cut(s) | 731 |
| Vha464I | CTTAAG | 2 cut(s) | 808, 848 |
| VpaK11BI | GGWCC | 1 cut(s) | 179 |
| VspI | ATTAAT | 1 cut(s) | 1353 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 377 |
| XapI | RAATTY | 4 cut(s) | 80, 950, 1020, 1774 |
| XbaI | TCTAGA | 1 cut(s) | 1615 |
| XceI | RCATGY | 3 cut(s) | 675, 1133, 1519 |
| XhoI | CTCGAG | 1 cut(s) | 1163 |
| XspI | CTAG | 5 cut(s) | 93, 491, 875, 1616, 1697 |
| Zsp2I | ATGCAT | 2 cut(s) | 861, 2408 |