Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

63455992 .. 63470998

Gene Structure 15007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG472900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3567 bp

ATGAAGAGCGCACCGCCGCGGAGAGGCCTCGAAGTCTACGATTTCGTCGAAGAGGACGAGTTTCAGGACCCGGTCGTGAAATTTTCCGGCAAACTCAAAAACCCTAGCAGCGAGGACCATCGGAATTCGAAGGACGAGTTTCTCCAACCTGGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGAAGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCGGTATACAATTGAAGAGAGGCTTTCCATCATAAATGATTTGAAACTCAGTGCTGCCACAGACTCCAGTCGTGAACAATCTGATTTATGTTCGAAAGAAGCCAATGTTCAAGCCAAAGAAATCAGTAGCATACCTTGCGTAGGTGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCGTGTTATCATAAACGATTTGAAATTGAGTGCTGCCACAGACTCCAATCATGAACAACAATCTGATTTATGTTCGAAAGAAGCCAACGTTCAAGCCAAAGAAATCAGTAGCATACCTTGTGTAGATGTTGATGAAGTTGACACTGACCACTGTTGTAAAAATGCTATTTCTCATTCTCCTCTGTATACAATTGAAGAGAGGCTTGCTATCATAAATGATTTGAAATTGAGTGCTGCCACAGACTCCAGTCATGAACAACAATCTGATTTAGACAAAGTCAGTAGCATACCTTATGTAGGGGTTGATGCAATGGACCATGATCATTGCAGTGATAGTGCTAGCTTAGATTCCCGCCTGGGCACAATGGAAGAGGATCTGGCTACGAAAAAGGATTATGTGGAATTGGATGCTGCTACACAATCCAAATTTTTGAGTCATGAACAACAGTCTGAATTAGATGACAATGGACGCAGAAAGTTTCTTTCTGAAACAGAGACCGGCGGTTCAGATGCTCCCTCACCTCCCCCCCAGACAAGCCAGTTAGACTGTGGCATTACAGTGTCCCCTTCCAGTAACGACCCAGTTGATGTCATTTCTGATGCTGATGAAAGCACAAGTTCTTTGGGTACTTATGAATTGGGTCATTGCTCGGGCAATTTTGAAATGGATAACGTAAATATGACGGTTGTTCTTTATCCGGATTATGTTGTATATGGGGATAGTTATTGTACAGGAGCCCAGCAGTTAACCTTCTCTCACAGTTGCATCAAAATCCGTGGTTTAGCACCGTCTGAAAACGACAAAACTTTGAATTTTGAATGGGGAGTTGGTGATCTTGTCAATGTTGAGTGTCAGTGGGTTCAAAATGCTGAGTTTGTCATGATAAAACTCCGTGTACTATCAAAGGATGCAGATGGAGATGATAATGCACTTGGTATTTCAGGCATTGAGGAGTTGAAGATTGGAGTTGTTGAACCCAACTGGTCACAGCAACAAGAAAGAATAGCATGTTTGAATGATAAATATTTGGATCTATTGGAACCGGTGCAAATCATGGAAGCGGACGATTCACTTGGCCAGAGGCATCATTTTCCAAATTTTGACGCGGATTTTGAAACTGTTGTATATCCGGAGGGGGATCCTGATGCCGTTTCCATCAGTAAGAGAGATGTTGATCTCTTACAGCCAGAGATATTTATTAACGATACATTGATCGACTTCTATATCAAGTATTTGGAAAATCGGATTCAACCCGAGGAAAAGCACAGGTTCTACTTTTTCAATAGTTTTTTCTTTCGAAAGCTGGCTGACCTGGACAAGGATCCATCTAGTGTTCCTGGTGGCAGGGCTGCTTTCCAACGTGTTCGGAAATGGACTAGGAAAGTGGATTTGTTCGAAAAGGATTACATCTTCATCCCTGTAAACTTCAATCTACACTGGACTCTAATTGTTATATGTCATCCTGGTGAAGTGCCTAGATATAAGGGTAAGATATCTATGAATGGACCTAGGCACATAGATTCTACATTAGTCTTCCTATCATTTATGTGCTTTTGTCATGTTTCAGTTGGAGACTCAGGCAAGTCAGTTAAGGTACCTTGTATATTGCACTTGGATTCTCTCAAAGGAAGTCATACAGGTCTCAAAAATCATGTTCAAAGTTATTTGTGGGAAGAGTGGAAAGAAAAGAAAAAGGAGACATCGGAAGAAATCTCATCAAACTTCCACAACCTGCGGTTTCTCTCACTGGAGCTACCACAACAGGAAAATACATATGATTGTGGCCTGTTTTTGCTTCACTATCTAGAGCTGTTTTTGGAAGAAGCTCCTGCTATCTTCAATCCATTCGACATAAACAAGTTCTCCACCTTTCTTAATGGAAATTGGTTTCTTCCTTCCGAGGCTTCTCTCAAGCGCACTCTTATCCAGAGATTAATTTTTGATCTCATTGAAAATCGTTACCGGGAAGTCTGTTTGCCAGCTTGCAGTGATGGAGATCAGGCTAAATATCCGGGATGTAATCAGCTTGAAATAGGTGCAAAGTTTCTTTCTGGAAGATCCAGTCCTGCTATAGCTTGCCAAGAAAATATATCAACTTCTCAAGCAGACCACGGAATCGAAATGACTCTGTTACCCACATCTTCTCTTAGGAGTTCCGAGTGTGTTAATGATGCGGGCCTGGTTCTCAGGGAATTTTTTCAGTCAGGAGAAACTGCAGGTTCACTATTTGGACAATATCAATCCTTCGAACAGAAATCGCCTTTTTACCATCCTAATGGAGCTACACCACCAGTAGAGGAAGAAACCCAAACTGGAGAGCAGTTTACCTATCTGGCTACGGGAGACACTGGCTTTCAAGAGATGTCTGCAATCACATCTCAAACTTGTGGTATTCAATGCTCTTCGAAATCTTATGGAGTTGAGACTTCGTATAACTTGGGGATGTCTGAACAGGCACCAAATGGAAACATTGATGCATCCCCTGACCGATCAGTTTGTGCCTCTGATCTTTCTGAAGGCATAGAGATCATTGAAAATGGTGCAGTTAGAGAAGATTTAGGTCCAGGCCAGAAAGAAGAAATGGATGTACAAAATTATCCATCATTGGACAGTGTCACGTGTGTGGTAGATGGCCTTGTTTCTGGTTTGGGTGAGGTGCAGAGCGGATCCTTGATTGAAGAAGGTTCTCAGGATCATGAAGGGGTGCATGACGGACTTGAAAATGGAGGTCCAAGTCGGAAAGAAGAAAGGGATATACAGACCCATTCATCAACAGAAGATGTCTTGTGTCTAGCAGATGGCCTTGTATCTGGTTCAGGCAATATGCAGAGCACTTTTGTTACTGAAGAAATTTCTCTGGACCAAAAAAAGGTGCATGTTGGAAATGAAAATAGAGGTTCACTTCCCTCATCCCAAGAAATTTCTGATATACCCGTTCTTGAAGACGTTGACATGGTAGGCAATGGTACAATCTCATGTGATAATGGTTTGGTGGGTGAGTCACAGGAGCCAGAGTCTGAAGAGCAACGAGCTGCAAAAAGAATGAGGCTTACACCTCCAGTTGAAGGGGAAAAATGTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

1188

Amino Acids

131.68

Weight (kDa)

4.54

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_ULP	PF25352	387 - 505	3.1e-43	Ubiquitin-like protease PH domain
Peptidase_C48	PF02902	560 - 783	9.8e-35	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	2220, 2687
Acc65I	GGTACC	1 cut(s)	2074
AccB1I	GGYRCC	2 cut(s)	2074, 2935
AccBSI	CCGCTC	1 cut(s)	3144
AccI	GTMKAC	4 cut(s)	36, 266, 464, 665
AccII	CGCG	2 cut(s)	19, 1586
AccIII	TCCGGA	2 cut(s)	1177, 1609
AclI	AACGTT	2 cut(s)	168, 567
AcoI	YGGCCR	1 cut(s)	1555
AcsI	RAATTY	8 cut(s)	80, 124, 905, 1291, 1576, 2672, 3330, 3399
AcuI	CTGAAG	3 cut(s)	3015, 3345, 3519
AcvI	CACGTG	1 cut(s)	3099
AfaI	GTAC	6 cut(s)	1108, 1210, 1377, 2076, 3069, 3448
AfiI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1798, 3349, 3545
AflIII	ACRYGT	2 cut(s)	1840, 3098
AgeI	ACCGGT	1 cut(s)	1522
AjnI	CCWGG	7 cut(s)	148, 834, 1791, 1816, 1942, 2658, 3043
AjuI	GAANNNNNNNTTGG	2 cut(s)	1290, 1322
AleI	CACNNNNGTG	1 cut(s)	3101
Alw21I	GWGCWC	1 cut(s)	3314
Alw26I	GTCTC	7 cut(s)	968, 2046, 2126, 2171, 2817, 2897, 3563
AlwNI	CAGNNNCTG	1 cut(s)	3497
Ama87I	CYCGRG	2 cut(s)	1129, 1733
Aor13HI	TCCGGA	2 cut(s)	1177, 1609
AoxI	GGCC	7 cut(s)	25, 1555, 2263, 2656, 3046, 3112, 3280
ApeKI	GCWGC	7 cut(s)	108, 314, 512, 713, 890, 1829, 3512
ApoI	RAATTY	8 cut(s)	80, 124, 905, 1291, 1576, 2672, 3330, 3399
ArsI	GACNNNNNNTTYG	2 cut(s)	1574, 1606
AseI	ATTAAT	1 cut(s)	2414
AsiGI	ACCGGT	1 cut(s)	1522
Asp700I	GAANNNNTTC	1 cut(s)	2676
Asp718I	GGTACC	1 cut(s)	2074
AspA2I	CCTAGG	1 cut(s)	1988
AspLEI	GCGC	2 cut(s)	11, 2397
AspS9I	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
AsuC2I	CCSGG	3 cut(s)	71, 2444, 2493
AsuHPI	GGTGA	5 cut(s)	990, 1322, 1958, 3143, 3488
AsuII	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
AsuNHI	GCTAGC	1 cut(s)	818
AvaI	CYCGRG	2 cut(s)	1129, 1733
AvaII	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
AvrII	CCTAGG	1 cut(s)	1988
BaeGI	GKGCMC	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	1557
BamHI	GGATCC	3 cut(s)	1618, 1801, 3146
BanI	GGYRCC	2 cut(s)	2074, 2935
BanII	GRGCYC	1 cut(s)	1219
BbrPI	CACGTG	1 cut(s)	3099
BbsI	GAAGAC	2 cut(s)	2005, 3429
Bbv12I	GWGCWC	1 cut(s)	3314
BbvI	GCAGC	7 cut(s)	120, 301, 499, 700, 877, 1816, 3499
BceAI	ACGGC	1 cut(s)	1613
BciT130I	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	3 cut(s)	71, 2444, 2493
BcoDI	GTCTC	7 cut(s)	968, 2046, 2126, 2171, 2817, 2897, 3563
BfaI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
BfmI	CTRYAG	2 cut(s)	2550, 2694
BfuAI	ACCTGC	2 cut(s)	2220, 2687
BisI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
BlnI	CCTAGG	1 cut(s)	1988
BlsI	GCNGC	8 cut(s)	18, 110, 316, 514, 715, 892, 1831, 3514
Bme18I	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
BmeT110I	CYCGRG	2 cut(s)	1129, 1733
BmgT120I	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
BmiI	GGNNCC	9 cut(s)	69, 1216, 1521, 1620, 1803, 2076, 2937, 3148, 3489
BmrI	ACTGGG	1 cut(s)	1055
BmtI	GCTAGC	1 cut(s)	822
BmuI	ACTGGG	1 cut(s)	1055
BoxI	GACNNNNGTC	2 cut(s)	327, 726
BpiI	GAAGAC	2 cut(s)	2005, 3429
BpmI	CTGGAG	5 cut(s)	310, 709, 2249, 2814, 3522
Bpu14I	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
BpuEI	CTTGAG	2 cut(s)	2375, 2565
BpuMI	CCSGG	3 cut(s)	71, 2444, 2493
BsaAI	YACGTR	1 cut(s)	3099
BsaBI	GATNNNNATC	2 cut(s)	1653, 2475
BsaI	GGTCTC	2 cut(s)	968, 2126
BsaJI	CCNNGG	8 cut(s)	17, 260, 835, 1255, 1734, 1988, 2379, 2590
BsaWI	WCCGGW	3 cut(s)	1177, 1522, 1609
BsaXI	ACNNNNNCTCC	4 cut(s)	2327, 2357, 3479, 3509
Bsc4I	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1798, 3349, 3545
Bse118I	RCCGGY	2 cut(s)	977, 1522
Bse3DI	GCAATG	4 cut(s)	795, 802, 1123, 3448
Bse8I	GATNNNNATC	2 cut(s)	1653, 2475
BseAI	TCCGGA	2 cut(s)	1177, 1609
BseBI	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
BseDI	CCNNGG	8 cut(s)	17, 260, 835, 1255, 1734, 1988, 2379, 2590
BseJI	GATNNNNATC	2 cut(s)	1653, 2475
BseLI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1798, 3349, 3545
BseMI	GCAATG	4 cut(s)	795, 802, 1123, 3448
BseMII	CTCAG	5 cut(s)	322, 1341, 2070, 2680, 3182
BseRI	GAGGAG	4 cut(s)	249, 447, 648, 1445
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	7 cut(s)	120, 301, 499, 700, 877, 1816, 3499
BseYI	CCCAGC	1 cut(s)	1218
BsgI	GTGCAG	2 cut(s)	3042, 3158
Bsh1236I	CGCG	2 cut(s)	19, 1586
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
BshNI	GGYRCC	2 cut(s)	2074, 2935
BshTI	ACCGGT	1 cut(s)	1522
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	3314
BsiHKCI	CYCGRG	2 cut(s)	1129, 1733
BsiSI	CCGG	8 cut(s)	71, 87, 978, 1178, 1523, 1610, 2443, 2492
BslFI	GGGAC	1 cut(s)	1027
BslI	CCNNNNNNNGG	6 cut(s)	23, 401, 776, 1798, 3349, 3545
BsmAI	GTCTC	7 cut(s)	968, 2046, 2126, 2171, 2817, 2897, 3563
BsmFI	GGGAC	1 cut(s)	1027
BsnI	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
Bso31I	GGTCTC	2 cut(s)	968, 2126
BsoBI	CYCGRG	2 cut(s)	1129, 1733
Bsp119I	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
Bsp1286I	GDGCHC	3 cut(s)	842, 1219, 3314
Bsp13I	TCCGGA	2 cut(s)	1177, 1609
Bsp1407I	TGTACA	2 cut(s)	1208, 3067
BspANI	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
BspCNI	CTCAG	5 cut(s)	321, 1342, 2069, 2679, 3181
BspEI	TCCGGA	2 cut(s)	1177, 1609
BspFNI	CGCG	2 cut(s)	19, 1586
BspHI	TCATGA	5 cut(s)	529, 730, 916, 1359, 3175
BspLI	GGNNCC	9 cut(s)	69, 1216, 1521, 1620, 1803, 2076, 2937, 3148, 3489
BspMAI	CTGCAG	1 cut(s)	2698
BspMI	ACCTGC	2 cut(s)	2220, 2687
BspOI	GCTAGC	1 cut(s)	822
BspQI	GCTCTTC	2 cut(s)	2887, 3495
BspT104I	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
BspT107I	GGYRCC	2 cut(s)	2074, 2935
BspTNI	GGTCTC	2 cut(s)	968, 2126
BsrBI	CCGCTC	1 cut(s)	3144
BsrDI	GCAATG	4 cut(s)	795, 802, 1123, 3448
BsrFI	RCCGGY	2 cut(s)	977, 1522
BsrGI	TGTACA	2 cut(s)	1208, 3067
BssAI	RCCGGY	2 cut(s)	977, 1522
BssECI	CCNNGG	8 cut(s)	17, 260, 835, 1255, 1734, 1988, 2379, 2590
BssNAI	GTATAC	3 cut(s)	267, 465, 666
BssT1I	CCWWGG	1 cut(s)	1988
Bst1107I	GTATAC	3 cut(s)	267, 465, 666
Bst2UI	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
Bst6I	CTCTTC	8 cut(s)	45, 270, 468, 669, 843, 2148, 2887, 3495
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstAUI	TGTACA	2 cut(s)	1208, 3067
BstBAI	YACGTR	1 cut(s)	3099
BstBI	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
BstC8I	GCNNGC	7 cut(s)	684, 820, 1785, 2460, 2464, 2557, 2656
BstDEI	CTNAG	7 cut(s)	308, 823, 1350, 2056, 2627, 2666, 3168
BstDSI	CCRYGG	3 cut(s)	17, 1255, 2590
BstENI	CCTNNNNNAGG	3 cut(s)	399, 774, 1796
BstFNI	CGCG	2 cut(s)	19, 1586
BstHHI	GCGC	2 cut(s)	11, 2397
BstMAI	GTCTC	7 cut(s)	968, 2046, 2126, 2171, 2817, 2897, 3563
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
BstNSI	RCATGY	2 cut(s)	1491, 3359
BstPAI	GACNNNNGTC	2 cut(s)	327, 726
BstSFI	CTRYAG	2 cut(s)	2550, 2694
BstSLI	GKGCMC	1 cut(s)	842
BstUI	CGCG	2 cut(s)	19, 1586
BstV1I	GCAGC	7 cut(s)	120, 301, 499, 700, 877, 1816, 3499
BstV2I	GAAGAC	2 cut(s)	2005, 3429
BstX2I	RGATCY	6 cut(s)	853, 1510, 1618, 1801, 2537, 3146
BstXI	CCANNNNNNTGG	1 cut(s)	2756
BstYI	RGATCY	6 cut(s)	853, 1510, 1618, 1801, 2537, 3146
BstZ17I	GTATAC	3 cut(s)	267, 465, 666
BsuRI	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
BtgI	CCRYGG	3 cut(s)	17, 1255, 2590
BtsI	GCAGTG	2 cut(s)	814, 2473
BveI	ACCTGC	2 cut(s)	2220, 2687
Cac8I	GCNNGC	7 cut(s)	684, 820, 1785, 2460, 2464, 2557, 2656
CaiI	CAGNNNCTG	1 cut(s)	3497
CciI	TCATGA	5 cut(s)	529, 730, 916, 1359, 3175
CfoI	GCGC	2 cut(s)	11, 2397
Cfr10I	RCCGGY	2 cut(s)	977, 1522
Cfr13I	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	2 cut(s)	957, 1592
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	6 cut(s)	1107, 1209, 1376, 2075, 3068, 3447
CspAI	ACCGGT	1 cut(s)	1522
CspCI	CAANNNNNGTGG	2 cut(s)	1237, 1272
CviQI	GTAC	6 cut(s)	1107, 1209, 1376, 2075, 3068, 3447
DdeI	CTNAG	7 cut(s)	308, 823, 1350, 2056, 2627, 2666, 3168
EaeI	YGGCCR	1 cut(s)	1555
Eam1104I	CTCTTC	8 cut(s)	45, 270, 468, 669, 843, 2148, 2887, 3495
EarI	CTCTTC	8 cut(s)	45, 270, 468, 669, 843, 2148, 2887, 3495
Eco130I	CCWWGG	1 cut(s)	1988
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	1219
Eco31I	GGTCTC	2 cut(s)	968, 2126
Eco32I	GATATC	1 cut(s)	1974
Eco47I	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
Eco57I	CTGAAG	3 cut(s)	3015, 3345, 3519
Eco72I	CACGTG	1 cut(s)	3099
Eco88I	CYCGRG	2 cut(s)	1129, 1733
EcoNI	CCTNNNNNAGG	3 cut(s)	399, 774, 1796
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	7 cut(s)	148, 834, 1791, 1816, 1942, 2658, 3043
EcoRV	GATATC	1 cut(s)	1974
EcoT14I	CCWWGG	1 cut(s)	1988
EcoT22I	ATGCAT	1 cut(s)	2959
EcoT38I	GRGCYC	1 cut(s)	1219
ErhI	CCWWGG	1 cut(s)	1988
FalI	AAGNNNNNCTT	4 cut(s)	267, 299, 666, 698
FaqI	GGGAC	1 cut(s)	1027
FauI	CCCGC	2 cut(s)	839, 2647
FauNDI	CATATG	1 cut(s)	2254
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	4 cut(s)	36, 266, 464, 665
Fnu4HI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
FriOI	GRGCYC	1 cut(s)	1219
Fsp4HI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
FspBI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
GlaI	GCGC	2 cut(s)	10, 2396
GluI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
GsaI	CCCAGC	1 cut(s)	1222
GsuI	CTGGAG	5 cut(s)	310, 709, 2249, 2814, 3522
HaeIII	GGCC	7 cut(s)	27, 1557, 2265, 2658, 3048, 3114, 3282
HapII	CCGG	8 cut(s)	71, 87, 978, 1178, 1523, 1610, 2443, 2492
HgaI	GACGC	2 cut(s)	957, 1592
HhaI	GCGC	2 cut(s)	11, 2397
Hin6I	GCGC	2 cut(s)	9, 2395
HinP1I	GCGC	2 cut(s)	9, 2395
HincII	GTYRAC	5 cut(s)	220, 418, 619, 1227, 3430
HindII	GTYRAC	5 cut(s)	220, 418, 619, 1227, 3430
HpaI	GTTAAC	1 cut(s)	1227
HpaII	CCGG	8 cut(s)	71, 87, 978, 1178, 1523, 1610, 2443, 2492
HphI	GGTGA	5 cut(s)	990, 1322, 1958, 3143, 3488
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	9 cut(s)	124, 1056, 1240, 2385, 2734, 2990, 3155, 3173, 3539
HpyCH4IV	ACGT	6 cut(s)	168, 567, 1152, 1840, 3098, 3426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	7 cut(s)	308, 823, 1350, 2056, 2627, 2666, 3168
HpySE526I	ACGT	6 cut(s)	168, 567, 1152, 1840, 3098, 3426
HspAI	GCGC	2 cut(s)	9, 2395
Kpn2I	TCCGGA	2 cut(s)	1177, 1609
KpnI	GGTACC	1 cut(s)	2078
Ksp22I	TGATCA	1 cut(s)	799
KspAI	GTTAAC	1 cut(s)	1227
KspI	CCGCGG	1 cut(s)	20
LguI	GCTCTTC	2 cut(s)	2887, 3495
LmnI	GCTCC	6 cut(s)	997, 1214, 2230, 2311, 2759, 3487
Lsp1109I	GCAGC	7 cut(s)	120, 301, 499, 700, 877, 1816, 3499
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
MaeII	ACGT	6 cut(s)	168, 567, 1152, 1840, 3098, 3426
MaeIII	GTNAC	7 cut(s)	1052, 1464, 2438, 2610, 3094, 3319, 3480
MbiI	CCGCTC	1 cut(s)	3144
MfeI	CAATTG	3 cut(s)	270, 468, 669
MflI	RGATCY	6 cut(s)	853, 1510, 1618, 1801, 2537, 3146
MhlI	GDGCHC	3 cut(s)	842, 1219, 3314
MlsI	TGGCCA	1 cut(s)	1557
MluNI	TGGCCA	1 cut(s)	1557
MlyI	GAGTC	9 cut(s)	317, 515, 716, 922, 1915, 2048, 2599, 3488, 3503
MmeI	TCCRAC	5 cut(s)	169, 1861, 2029, 3197, 3340
Mox20I	TGGCCA	1 cut(s)	1557
Mph1103I	ATGCAT	1 cut(s)	2959
MroI	TCCGGA	2 cut(s)	1177, 1609
MroXI	GAANNNNTTC	1 cut(s)	2676
MscI	TGGCCA	1 cut(s)	1557
MseI	TTAA	6 cut(s)	1226, 1680, 2070, 2355, 2414, 2646
MslI	CAYNNNNRTG	6 cut(s)	807, 1037, 1944, 2026, 2754, 3101
Msp20I	TGGCCA	1 cut(s)	1557
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	8 cut(s)	71, 87, 978, 1178, 1523, 1610, 2443, 2492
MunI	CAATTG	3 cut(s)	270, 468, 669
MvaI	CCWGG	7 cut(s)	150, 836, 1793, 1818, 1944, 2660, 3045
MvnI	CGCG	2 cut(s)	19, 1586
MwoI	GCNNNNNNNGC	1 cut(s)	396
NciI	CCSGG	3 cut(s)	71, 2444, 2493
NdeI	CATATG	1 cut(s)	2254
NheI	GCTAGC	1 cut(s)	818
NlaIV	GGNNCC	9 cut(s)	69, 1216, 1521, 1620, 1803, 2076, 2937, 3148, 3489
NmuCI	GTSAC	3 cut(s)	1464, 3094, 3480
NsiI	ATGCAT	1 cut(s)	2959
NspI	RCATGY	2 cut(s)	1491, 3359
NspV	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
OliI	CACNNNNGTG	1 cut(s)	3101
PagI	TCATGA	5 cut(s)	529, 730, 916, 1359, 3175
PceI	AGGCCT	1 cut(s)	27
PciSI	GCTCTTC	2 cut(s)	2887, 3495
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 45, 54
PdmI	GAANNNNTTC	1 cut(s)	2676
PfeI	GAWTC	6 cut(s)	827, 1547, 1726, 2000, 2096, 2595
PflFI	GACNNNGTC	3 cut(s)	71, 755, 3092
PfoI	TCCNGGA	1 cut(s)	2491
PinAI	ACCGGT	1 cut(s)	1522
PkrI	GCNGC	8 cut(s)	18, 110, 316, 514, 715, 892, 1831, 3514
PleI	GAGTC	9 cut(s)	317, 515, 716, 921, 1915, 2048, 2599, 3487, 3502
PmaCI	CACGTG	1 cut(s)	3099
PmlI	CACGTG	1 cut(s)	3099
PpsI	GAGTC	9 cut(s)	317, 515, 716, 921, 1915, 2048, 2599, 3487, 3502
Ppu21I	YACGTR	1 cut(s)	3099
PpuMI	RGGWCCY	1 cut(s)	67
PshAI	GACNNNNGTC	2 cut(s)	327, 726
PshBI	ATTAAT	1 cut(s)	2414
Psp1406I	AACGTT	2 cut(s)	168, 567
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	7 cut(s)	148, 834, 1791, 1816, 1942, 2658, 3043
PspCI	CACGTG	1 cut(s)	3099
PspFI	CCCAGC	1 cut(s)	1218
PspGI	CCWGG	7 cut(s)	148, 834, 1791, 1816, 1942, 2658, 3043
PspN4I	GGNNCC	9 cut(s)	69, 1216, 1521, 1620, 1803, 2076, 2937, 3148, 3489
PspPI	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	2698
PstNI	CAGNNNCTG	1 cut(s)	3497
PsuI	RGATCY	6 cut(s)	853, 1510, 1618, 1801, 2537, 3146
PsyI	GACNNNGTC	3 cut(s)	71, 755, 3092
RsaI	GTAC	6 cut(s)	1108, 1210, 1377, 2076, 3069, 3448
RsaNI	GTAC	6 cut(s)	1107, 1209, 1376, 2075, 3068, 3447
RseI	CAYNNNNRTG	6 cut(s)	807, 1037, 1944, 2026, 2754, 3101
SacII	CCGCGG	1 cut(s)	20
SapI	GCTCTTC	2 cut(s)	2887, 3495
SaqAI	TTAA	6 cut(s)	1226, 1680, 2070, 2355, 2414, 2646
SatI	GCNGC	8 cut(s)	17, 109, 315, 513, 714, 891, 1830, 3513
Sau96I	GGNCC	8 cut(s)	67, 115, 793, 1985, 2656, 3041, 3209, 3340
SchI	GAGTC	9 cut(s)	317, 515, 716, 922, 1915, 2048, 2599, 3488, 3503
SduI	GDGCHC	3 cut(s)	842, 1219, 3314
SexAI	ACCWGGT	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	2550, 2694
Sfr303I	CCGCGG	1 cut(s)	20
SfuI	TTCGAA	8 cut(s)	128, 155, 353, 554, 1777, 1875, 2727, 2885
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
SmiMI	CAYNNNNRTG	6 cut(s)	807, 1037, 1944, 2026, 2754, 3101
SmlI	CTYRAG	2 cut(s)	2390, 2580
SmoI	CTYRAG	2 cut(s)	2390, 2580
SseBI	AGGCCT	1 cut(s)	27
SspI	AATATT	1 cut(s)	1505
SspMI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
StuI	AGGCCT	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	1988
TaiI	ACGT	6 cut(s)	171, 570, 1155, 1843, 3101, 3429
TaqII	GACCGA	1 cut(s)	2982
TatI	WGTACW	3 cut(s)	1208, 1375, 3067
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	6 cut(s)	827, 1547, 1726, 2000, 2096, 2595
Tru1I	TTAA	6 cut(s)	1226, 1680, 2070, 2355, 2414, 2646
Tru9I	TTAA	6 cut(s)	1226, 1680, 2070, 2355, 2414, 2646
TseFI	GTSAC	3 cut(s)	1464, 3094, 3480
TseI	GCWGC	7 cut(s)	108, 314, 512, 713, 890, 1829, 3512
Tsp45I	GTSAC	3 cut(s)	1464, 3094, 3480
TspGWI	ACGGA	4 cut(s)	1244, 1361, 2607, 3207
Tth111I	GACNNNGTC	3 cut(s)	71, 755, 3092
VpaK11BI	GGWCC	7 cut(s)	67, 115, 793, 1985, 3041, 3209, 3340
VspI	ATTAAT	1 cut(s)	2414
XagI	CCTNNNNNAGG	3 cut(s)	399, 774, 1796
XapI	RAATTY	8 cut(s)	80, 124, 905, 1291, 1576, 2672, 3330, 3399
XbaI	TCTAGA	1 cut(s)	2284
XceI	RCATGY	2 cut(s)	1491, 3359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XmaJI	CCTAGG	1 cut(s)	1988
XmiI	GTMKAC	4 cut(s)	36, 266, 464, 665
XmnI	GAANNNNTTC	1 cut(s)	2676
XspI	CTAG	8 cut(s)	105, 819, 1809, 1857, 1956, 1989, 2285, 3272
Zsp2I	ATGCAT	1 cut(s)	2959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.