Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

57112449 .. 57113553

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGACTCTGTTACCCACATCTTCTCTTAGGAGTTCTGAGTGTGTTAGTGATGCAGGCCTGGTTCTCAGGGAATTTTTTCAGTCAGGAGAAACTGCAGGTTCACTATTTGGACAATATCAATCCTTCGAACAGAAATCGCCTTTTTACCATCCTAATGGAGCTACACCACCAGTAGAGGAAGAAACCCAAAATGGAGAGCAGTTTACCTATCTGGCTACGGGAGACGCTGGCTTTCAAGAGATGTCTGCAATCACATCTCAAACTAGTGGTATTCAATGCTCTTCGAAATCTTTTGGAGTTGAGAGTTCGTATAACTTGGGGATGTCTGAACAGGCACCAAATGGAAACATTGATGCATCCCCTGACCGATCAGTTTGTGCCTCTGATCTTTCTGAAGGCATAGAGATCATTGAAAATGGTGCAGTTAGAGAAGATTTAGGTCCAGGCCAGAAAGAAGAAAGGGATGTACAAAATTATCCATCATTGGACAGTGTCACGTGTGTGGTAGATGGCCTTGTTTCTGGTTTGGGTGAGGTGCAGAGCAGATCCTTGATTGAAGAAGGTTCTCAGGATCATGAAGGGGTGCATGACGGACTTGAAAATGGAGGTCCAAGTCGGAAAGAAGAAAGGGATGTACAGACCCATCCATCAACAGAAGATGTCTTGTGTCTAGCAGATGGCCTTGTATCTGGTTCAGGCAATATGCAGAACACTTCTGTTACTGAAGAAAGTTCTCTGGACCAAAAAAAGGTGCATGTTGGAAATGAAAATAGAGGTTCACTTCCCTCATCCCAAGAAATTTCTGATACACCCGTTCTTGAAGACGTTGACATGGTAGGCAATGGTACAATCTCATGTGATAATGGTTTGGTGGGCGAGTCACAGGAGCCAGAGTCTGAAGAGCAACGAGCTGCAAAAAGAATGAGGCTTACACCTCCAGTTGAAGGGGAAAAATGTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

321

Amino Acids

34.24

Weight (kDa)

4.22

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	334
AclWI	GGATC	2 cut(s)	540, 579
AcsI	RAATTY	2 cut(s)	71, 798
AcuI	CTGAAG	3 cut(s)	414, 744, 918
AcvI	CACGTG	1 cut(s)	498
AfaI	GTAC	3 cut(s)	468, 636, 847
AfiI	CCNNNNNNNGG	2 cut(s)	748, 944
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	7 cut(s)	236, 275, 413, 557, 599, 821, 944
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	2 cut(s)	57, 442
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	161, 911
AluI	AGCT	2 cut(s)	161, 911
Alw26I	GTCTC	2 cut(s)	216, 962
AlwI	GGATC	2 cut(s)	540, 579
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	4 cut(s)	55, 445, 511, 679
ApeKI	GCWGC	1 cut(s)	911
ApoI	RAATTY	2 cut(s)	71, 798
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	440, 608, 739
AsuHPI	GGTGA	1 cut(s)	542
AsuII	TTCGAA	2 cut(s)	126, 284
AvaII	GGWCC	3 cut(s)	440, 608, 739
BaeI	ACNNNNGTAYC	2 cut(s)	798, 831
BanI	GGYRCC	1 cut(s)	334
BbrPI	CACGTG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	828
BbvI	GCAGC	1 cut(s)	898
BccI	CCATC	6 cut(s)	156, 487, 503, 651, 655, 671
BciT130I	CCWGG	2 cut(s)	59, 444
BcoDI	GTCTC	2 cut(s)	216, 962
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	2 cut(s)	264, 671
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	912
BlsI	GCNGC	1 cut(s)	913
Bme1390I	CCNGG	2 cut(s)	59, 444
Bme18I	GGWCC	3 cut(s)	440, 608, 739
BmgT120I	GGNCC	3 cut(s)	440, 608, 739
BmiI	GGNNCC	2 cut(s)	336, 888
BmrFI	CCNGG	2 cut(s)	59, 444
BmsI	GCATC	3 cut(s)	40, 343, 365
BpiI	GAAGAC	1 cut(s)	828
BpmI	CTGGAG	1 cut(s)	921
Bpu14I	TTCGAA	2 cut(s)	126, 284
BsaAI	YACGTR	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	878, 908
Bsc4I	CCNNNNNNNGG	2 cut(s)	748, 944
Bse1I	ACTGG	2 cut(s)	170, 938
Bse3DI	GCAATG	1 cut(s)	847
BseBI	CCWGG	2 cut(s)	59, 444
BseGI	GGATG	7 cut(s)	148, 327, 356, 469, 637, 643, 788
BseLI	CCNNNNNNNGG	2 cut(s)	748, 944
BseMI	GCAATG	1 cut(s)	847
BseMII	CTCAG	3 cut(s)	27, 79, 581
BseNI	ACTGG	2 cut(s)	170, 938
BseXI	GCAGC	1 cut(s)	898
BsgI	GTGCAG	2 cut(s)	441, 557
BshFI	GGCC	4 cut(s)	57, 447, 513, 681
BshNI	GGYRCC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	748, 944
BsmAI	GTCTC	2 cut(s)	216, 962
BsmBI	CGTCTC	1 cut(s)	216
BsnI	GGCC	4 cut(s)	57, 447, 513, 681
Bsp119I	TTCGAA	2 cut(s)	126, 284
Bsp1407I	TGTACA	2 cut(s)	466, 634
Bsp143I	GATC	5 cut(s)	368, 385, 405, 545, 571
BspANI	GGCC	4 cut(s)	57, 447, 513, 681
BspCNI	CTCAG	3 cut(s)	28, 78, 580
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	336, 888
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	2 cut(s)	540, 579
BspQI	GCTCTTC	2 cut(s)	286, 894
BspT104I	TTCGAA	2 cut(s)	126, 284
BspT107I	GGYRCC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	847
BsrGI	TGTACA	2 cut(s)	466, 634
BsrI	ACTGG	2 cut(s)	170, 938
BssMI	GATC	5 cut(s)	368, 385, 405, 545, 571
Bst2UI	CCWGG	2 cut(s)	59, 444
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	286, 894
BstAUI	TGTACA	2 cut(s)	466, 634
BstBAI	YACGTR	1 cut(s)	498
BstBI	TTCGAA	2 cut(s)	126, 284
BstC8I	GCNNGC	2 cut(s)	55, 229
BstDEI	CTNAG	4 cut(s)	26, 36, 65, 567
BstF5I	GGATG	7 cut(s)	148, 327, 356, 469, 637, 643, 788
BstKTI	GATC	5 cut(s)	371, 388, 408, 548, 574
BstMAI	GTCTC	2 cut(s)	216, 962
BstMBI	GATC	5 cut(s)	368, 385, 405, 545, 571
BstNI	CCWGG	2 cut(s)	59, 444
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	57, 442
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	898
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	545
BsuRI	GGCC	4 cut(s)	57, 447, 513, 681
BtsCI	GGATG	7 cut(s)	148, 327, 356, 469, 637, 643, 788
BtsIMutI	CAGTG	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	55, 229
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	574
Cfr13I	GGNCC	3 cut(s)	440, 608, 739
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	467, 635, 846
CviAII	CATG	6 cut(s)	575, 587, 755, 832, 855, 963
CviQI	GTAC	3 cut(s)	467, 635, 846
DdeI	CTNAG	4 cut(s)	26, 36, 65, 567
DpnI	GATC	5 cut(s)	370, 387, 407, 547, 573
DpnII	GATC	5 cut(s)	368, 385, 405, 545, 571
Eam1104I	CTCTTC	2 cut(s)	286, 894
EarI	CTCTTC	2 cut(s)	286, 894
Eco147I	AGGCCT	1 cut(s)	57
Eco47I	GGWCC	3 cut(s)	440, 608, 739
Eco57I	CTGAAG	3 cut(s)	414, 744, 918
Eco72I	CACGTG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	57, 442
EcoT22I	ATGCAT	1 cut(s)	358
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	6 cut(s)	578, 590, 758, 835, 858, 966
FaiI	YATR	9 cut(s)	312, 401, 576, 588, 704, 756, 833, 856, 964
FatI	CATG	6 cut(s)	574, 586, 754, 831, 854, 962
Fnu4HI	GCNGC	1 cut(s)	912
FokI	GGATG	7 cut(s)	135, 334, 343, 476, 630, 644, 775
Fsp4HI	GCNGC	1 cut(s)	912
FspBI	CTAG	2 cut(s)	264, 671
GluI	GCNGC	1 cut(s)	912
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	4 cut(s)	57, 447, 513, 681
HgaI	GACGC	1 cut(s)	233
Hin1II	CATG	6 cut(s)	578, 590, 758, 835, 858, 966
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	3 cut(s)	4, 878, 893
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	4 cut(s)	101, 204, 779, 829
Hpy188I	TCNGA	7 cut(s)	37, 328, 385, 394, 618, 805, 898
Hpy188III	TCNNGA	6 cut(s)	84, 236, 569, 575, 737, 818
Hpy8I	GTNNAC	4 cut(s)	101, 204, 779, 829
HpyAV	CCTTC	5 cut(s)	133, 389, 554, 572, 938
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	2 cut(s)	497, 825
HpyF3I	CTNAG	4 cut(s)	26, 36, 65, 567
HpySE526I	ACGT	2 cut(s)	497, 825
Hsp92II	CATG	6 cut(s)	578, 590, 758, 835, 858, 966
Kzo9I	GATC	5 cut(s)	368, 385, 405, 545, 571
LguI	GCTCTTC	2 cut(s)	286, 894
LmnI	GCTCC	2 cut(s)	158, 886
Lsp1109I	GCAGC	1 cut(s)	898
LweI	GCATC	3 cut(s)	40, 343, 365
MaeI	CTAG	2 cut(s)	264, 671
MaeII	ACGT	2 cut(s)	497, 825
MaeIII	GTNAC	4 cut(s)	9, 493, 718, 879
MalI	GATC	5 cut(s)	370, 387, 407, 547, 573
MboI	GATC	5 cut(s)	368, 385, 405, 545, 571
MflI	RGATCY	1 cut(s)	545
MluCI	AATT	3 cut(s)	71, 472, 798
MlyI	GAGTC	2 cut(s)	887, 902
MmeI	TCCRAC	2 cut(s)	596, 739
MnlI	CCTC	8 cut(s)	169, 391, 526, 599, 767, 796, 918, 945
Mph1103I	ATGCAT	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	153, 500
MspR9I	CCNGG	2 cut(s)	59, 444
MvaI	CCWGG	2 cut(s)	59, 444
NdeII	GATC	5 cut(s)	368, 385, 405, 545, 571
NlaIII	CATG	6 cut(s)	578, 590, 758, 835, 858, 966
NlaIV	GGNNCC	2 cut(s)	336, 888
NmuCI	GTSAC	2 cut(s)	493, 879
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	758
NspV	TTCGAA	2 cut(s)	126, 284
OliI	CACNNNNGTG	1 cut(s)	500
PagI	TCATGA	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	57
PciSI	GCTCTTC	2 cut(s)	286, 894
PdmI	GAANNNNTTC	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	913
PleI	GAGTC	2 cut(s)	886, 901
PmaCI	CACGTG	1 cut(s)	498
PmlI	CACGTG	1 cut(s)	498
PpsI	GAGTC	2 cut(s)	886, 901
Ppu21I	YACGTR	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	57, 442
PspCI	CACGTG	1 cut(s)	498
PspGI	CCWGG	2 cut(s)	57, 442
PspN4I	GGNNCC	2 cut(s)	336, 888
PspPI	GGNCC	3 cut(s)	440, 608, 739
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	3 cut(s)	468, 636, 847
RsaNI	GTAC	3 cut(s)	467, 635, 846
RseI	CAYNNNNRTG	2 cut(s)	153, 500
SapI	GCTCTTC	2 cut(s)	286, 894
SatI	GCNGC	1 cut(s)	912
Sau3AI	GATC	5 cut(s)	368, 385, 405, 545, 571
Sau96I	GGNCC	3 cut(s)	440, 608, 739
SchI	GAGTC	2 cut(s)	887, 902
ScrFI	CCNGG	2 cut(s)	59, 444
SfaNI	GCATC	3 cut(s)	40, 343, 365
SfcI	CTRYAG	1 cut(s)	93
SfuI	TTCGAA	2 cut(s)	126, 284
SinI	GGWCC	3 cut(s)	440, 608, 739
SmiMI	CAYNNNNRTG	2 cut(s)	153, 500
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	3 cut(s)	71, 472, 798
SseBI	AGGCCT	1 cut(s)	57
SspMI	CTAG	2 cut(s)	264, 671
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	57, 442
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	2 cut(s)	500, 828
TaqI	TCGA	2 cut(s)	126, 284
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	71, 472, 798
TatI	WGTACW	2 cut(s)	466, 634
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	493, 879
TseI	GCWGC	1 cut(s)	911
Tsp45I	GTSAC	2 cut(s)	493, 879
TspDTI	ATGAA	2 cut(s)	591, 780
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	496
Tth111I	GACNNNGTC	1 cut(s)	491
VpaK11BI	GGWCC	3 cut(s)	440, 608, 739
XapI	RAATTY	2 cut(s)	71, 798
XceI	RCATGY	1 cut(s)	758
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	264, 671
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.