Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002627

Physical Location & Seq

Genomic Coordinates Reverse (-)

29556153 .. 29559528

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0299200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGGGTTGGGCTTGAAGTGGTGCTGGTGGTGGTTGACGGTGACGGCGGTTGGAGTAGGAGTGGTGGTTACTTCTGAGACTAAGCATGACAATCTGGTCAGTCGTATTGCTTTTGGATCATGTGCCAACCAATCTGCTCCTCAGCCCATATGGGATGCAGTCATAAAGTTTGATCCCCAAGTTTTCATTTGGCTGGGTGATAACATTTATGGAGACATCAGGTTGCCTAATAAGCTTTTTGGGAGGAAAAGAAATATTGGTCCATGGAAGAATACTGAAAGGTTTGTTCCTGCTAGCGAGCAGGAAATGAAGTCCAAGTATGAGGAAGCCAAGTCTAATCCTGGTTATTCTCGTCTTCGACAGAAGACTAAGGTCATAGGCACATGGGATGACCATGATTATGGATTAAACGATGCAGGAAAAGAATTTGCTGGGAAAGTAACTAATCAAAGGCTTATGCTTGATTTCTTAGATGAGCCTCAAGATAGTCCACGGCGCAAACAAGCTGGTGTATATGCATCTTATACATTTGGCCCCACAGGTAGACAAATCAAGGTTATCCTATTAGATACGAGATACCACCGAGATCCTCTACGTAGTGGCAGAACTATTTTGGGGAGTTCACAGTGGACTTGGTTAGAGAAAGAGCTGTATGGTTCACCAACAGCCGTTACTATTATTGGGTCATCTGTACAGGTCATATCAAATCTCTCAGCAACAACCGGGCCGTTTTTCTACATGGAATCATGGGGACGTTTTCCAAAAGAGAGAGATCGATTATTTAAACTGCTGGCAGATAGTAAGAGGGGTGGAGTGTTTTTCATTAGTGGAGATGTTCATTTTGGAGAAATTACAAGATATGATTGTGCCACTGGATATCCATTGTATGATGTAACTGCAAGCGGAATCACCCAAGCAGTTGAAAAGGTAGTTCCAACGCCGCTGCATTTCTTAGTGAGATTTCTGGCATGGTTTACTCCTGCCACCTTGAGAGTAATGGATGGAAACTGCAGACGCAAGTCATGCACATATGGCATGCCTAATTTTGGAGCAATCGAGATAGACTGGTATGCAACTCCTGTGACATTGAAAATTCAAGTGAGGGATACGGATGGCGATCCTGTGGTAGGTGTAACTGCACCATTATCGGAATTGCAAGCAAGAAATTTCAACTATGTGACTAGCAATAAAGCAGGAAAGCACCAAAGGCACTGCCATCTTGAAATCAATCAACCAGGGATTGTCAGATATCGCTTGGCTATTTTAGCTTATTGTTCTCTATCCGTATTGGTCCTCGCTATGATGGGTGTGATTTGGCTTGCTACATTATGTTGCTGTCGATGTTCCCGCCGCAAGAAAAAGCGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070011 GO:0070137 GO:0070139 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

456

Amino Acids

51.59

Weight (kDa)

9.41

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoD	PF09423	37 - 290	4.9e-23	PhoD-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09730 AT1G09730
fragaria_vesca	FvH4_3g25421 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390 FvH4_5g35390
malus_domestica	MD08G1197400.v1.1 MD15G1385000.v1.1
prunus_persica	Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1 Prupe.6G149300_v2.0.a1
pyrus_communis	pycom08g16950 pycom08g16970 pycom15g34500
rosa_chinensis	RchiOBHm_Chr7g0236781
rosa_laevigata	RLG00000001062
rosa_multiflora	Rmu_sc0003720.1_g000028
rosa_roxburghii	Rroxscaffold_3G00224860
rosa_rugosa	Rorug07G0298800 Rorug07G0298900 Rorug07G0299000.1 Rorug07G0299100 Rorug07G0299200
rosa_samantha	Rh7AG454400 Rh7BG425600 Rh7CG472900 Rh7DG442100
rosa_wichuraiana	Rw7G037660 Rw7G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	544
AccII	CGCG	1 cut(s)	1365
AciI	CCGC	5 cut(s)	47, 903, 941, 1348, 1351
AclWI	GGATC	4 cut(s)	124, 167, 581, 1112
AcsI	RAATTY	3 cut(s)	425, 1092, 1165
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	2 cut(s)	1046, 1127
AgsI	TTSAA	6 cut(s)	16, 923, 1090, 1097, 1171, 1223
AjnI	CCWGG	2 cut(s)	340, 1234
AluBI	AGCT	4 cut(s)	235, 506, 649, 1268
AluI	AGCT	4 cut(s)	235, 506, 649, 1268
Alw26I	GTCTC	2 cut(s)	71, 207
AlwI	GGATC	4 cut(s)	124, 167, 581, 1112
AoxI	GGCC	2 cut(s)	532, 725
ApeKI	GCWGC	1 cut(s)	943
ApoI	RAATTY	3 cut(s)	425, 1092, 1165
AspLEI	GCGC	2 cut(s)	498, 1365
AspS9I	GGNCC	4 cut(s)	260, 533, 725, 1291
AsuC2I	CCSGG	1 cut(s)	724
AsuHPI	GGTGA	4 cut(s)	52, 209, 651, 901
AsuNHI	GCTAGC	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	260, 1291
BbsI	GAAGAC	2 cut(s)	347, 371
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	930
BccI	CCATC	4 cut(s)	995, 1106, 1224, 1297
BceAI	ACGGC	4 cut(s)	60, 509, 653, 712
BcgI	CGANNNNNNTGC	2 cut(s)	1128, 1162
BciT130I	CCWGG	2 cut(s)	342, 1236
BciVI	GTATCC	1 cut(s)	1099
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	2 cut(s)	71, 207
BfaI	CTAG	2 cut(s)	294, 1182
BfmI	CTRYAG	1 cut(s)	1009
BfuI	GTATCC	1 cut(s)	1099
BisI	GCNGC	3 cut(s)	941, 944, 1351
BlsI	GCNGC	3 cut(s)	942, 945, 1352
Bme1390I	CCNGG	3 cut(s)	342, 724, 1236
Bme18I	GGWCC	2 cut(s)	260, 1291
BmgT120I	GGNCC	4 cut(s)	260, 533, 725, 1291
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	3 cut(s)	342, 724, 1236
BmsI	GCATC	3 cut(s)	145, 403, 527
BmtI	GCTAGC	1 cut(s)	297
BoxI	GACNNNNGTC	2 cut(s)	371, 1018
BpiI	GAAGAC	2 cut(s)	347, 371
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	465, 1009
BpuMI	CCSGG	1 cut(s)	724
Bsa29I	ATCGAT	1 cut(s)	775
BsaAI	YACGTR	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	1116
BsaJI	CCNNGG	3 cut(s)	263, 491, 1235
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 51, 75, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	1046, 1127
Bse1I	ACTGG	2 cut(s)	877, 1070
Bse8I	GATNNNNATC	1 cut(s)	1116
BseBI	CCWGG	2 cut(s)	342, 1236
BseCI	ATCGAT	1 cut(s)	775
BseDI	CCNNGG	3 cut(s)	263, 491, 1235
BseGI	GGATG	4 cut(s)	160, 394, 1006, 1117
BseJI	GATNNNNATC	1 cut(s)	1116
BseLI	CCNNNNNNNGG	2 cut(s)	1046, 1127
BseMII	CTCAG	3 cut(s)	66, 155, 726
BseNI	ACTGG	2 cut(s)	877, 1070
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	930
BseYI	CCCAGC	2 cut(s)	193, 431
BsgI	GTGCAG	1 cut(s)	1122
Bsh1236I	CGCG	1 cut(s)	1365
BshFI	GGCC	2 cut(s)	534, 727
BshVI	ATCGAT	1 cut(s)	775
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	2 cut(s)	1046, 1127
BsmAI	GTCTC	2 cut(s)	71, 207
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	2 cut(s)	534, 727
Bsp1407I	TGTACA	1 cut(s)	691
Bsp143I	GATC	5 cut(s)	116, 172, 586, 772, 1117
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	5 cut(s)	47, 903, 941, 1348, 1351
BspANI	GGCC	2 cut(s)	534, 727
BspCNI	CTCAG	3 cut(s)	67, 154, 725
BspDI	ATCGAT	1 cut(s)	775
BspFNI	CGCG	1 cut(s)	1365
BspLI	GGNNCC	1 cut(s)	535
BspMAI	CTGCAG	1 cut(s)	1013
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	4 cut(s)	124, 167, 581, 1112
BsrGI	TGTACA	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	877, 1070
BssECI	CCNNGG	3 cut(s)	263, 491, 1235
BssMI	GATC	5 cut(s)	116, 172, 586, 772, 1117
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	342, 1236
Bst4CI	ACNGT	2 cut(s)	40, 627
BstAPI	GCANNNNNTGC	1 cut(s)	1023
BstAUI	TGTACA	1 cut(s)	691
BstBAI	YACGTR	1 cut(s)	596
BstC8I	GCNNGC	7 cut(s)	295, 299, 792, 901, 1037, 1158, 1320
BstDEI	CTNAG	7 cut(s)	75, 81, 141, 369, 469, 712, 952
BstDSI	CCRYGG	2 cut(s)	263, 491
BstENI	CCTNNNNNAGG	1 cut(s)	1125
BstF5I	GGATG	4 cut(s)	160, 394, 1006, 1117
BstFNI	CGCG	1 cut(s)	1365
BstHHI	GCGC	2 cut(s)	498, 1365
BstKTI	GATC	5 cut(s)	119, 175, 589, 775, 1120
BstMAI	GTCTC	2 cut(s)	71, 207
BstMBI	GATC	5 cut(s)	116, 172, 586, 772, 1117
BstMWI	GCNNNNNNNGC	5 cut(s)	232, 1023, 1032, 1207, 1265
BstNI	CCWGG	2 cut(s)	342, 1236
BstNSI	RCATGY	1 cut(s)	1039
BstPAI	GACNNNNGTC	2 cut(s)	371, 1018
BstSCI	CCNGG	3 cut(s)	340, 722, 1234
BstSFI	CTRYAG	1 cut(s)	1009
BstSNI	TACGTA	1 cut(s)	596
BstUI	CGCG	1 cut(s)	1365
BstV1I	GCAGC	1 cut(s)	930
BstV2I	GAAGAC	2 cut(s)	347, 371
BstX2I	RGATCY	1 cut(s)	586
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	586
Bsu15I	ATCGAT	1 cut(s)	775
BsuI	GTATCC	1 cut(s)	1099
BsuRI	GGCC	2 cut(s)	534, 727
BsuTUI	ATCGAT	1 cut(s)	775
BtgI	CCRYGG	2 cut(s)	263, 491
BtsCI	GGATG	4 cut(s)	160, 394, 1006, 1117
BtsI	GCAGTG	1 cut(s)	1210
BtsIMutI	CAGTG	3 cut(s)	632, 870, 1210
Cac8I	GCNNGC	7 cut(s)	295, 299, 792, 901, 1037, 1158, 1320
CfoI	GCGC	2 cut(s)	498, 1365
Cfr13I	GGNCC	4 cut(s)	260, 533, 725, 1291
ClaI	ATCGAT	1 cut(s)	775
CseI	GACGC	1 cut(s)	1023
Csp6I	GTAC	1 cut(s)	692
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	7 cut(s)	75, 81, 141, 369, 469, 712, 952
DpnI	GATC	5 cut(s)	118, 174, 588, 774, 1119
DpnII	GATC	5 cut(s)	116, 172, 586, 772, 1117
DraI	TTTAAA	1 cut(s)	784
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eco105I	TACGTA	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	263
Eco32I	GATATC	2 cut(s)	878, 1250
Eco47I	GGWCC	2 cut(s)	260, 1291
EcoNI	CCTNNNNNAGG	1 cut(s)	1125
EcoRII	CCWGG	2 cut(s)	340, 1234
EcoRV	GATATC	2 cut(s)	878, 1250
EcoT14I	CCWWGG	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	263
FaqI	GGGAC	1 cut(s)	765
FauI	CCCGC	1 cut(s)	1355
FauNDI	CATATG	2 cut(s)	149, 1030
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	941, 944, 1351
FokI	GGATG	4 cut(s)	167, 401, 1013, 1124
Fsp4HI	GCNGC	3 cut(s)	941, 944, 1351
FspBI	CTAG	2 cut(s)	294, 1182
GlaI	GCGC	2 cut(s)	497, 1364
GluI	GCNGC	3 cut(s)	941, 944, 1351
GsaI	CCCAGC	2 cut(s)	197, 435
HaeIII	GGCC	2 cut(s)	534, 727
HapII	CCGG	1 cut(s)	723
HgaI	GACGC	1 cut(s)	1023
HhaI	GCGC	2 cut(s)	498, 1365
Hin6I	GCGC	2 cut(s)	496, 1363
HinP1I	GCGC	2 cut(s)	496, 1363
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	743, 906
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	4 cut(s)	52, 209, 651, 901
Hpy166II	GTNNAC	7 cut(s)	36, 491, 545, 623, 630, 659, 975
Hpy188I	TCNGA	3 cut(s)	76, 1150, 1247
Hpy188III	TCNNGA	3 cut(s)	482, 1057, 1220
Hpy8I	GTNNAC	7 cut(s)	36, 491, 545, 623, 630, 659, 975
HpyCH4III	ACNGT	2 cut(s)	40, 627
HpyCH4IV	ACGT	2 cut(s)	595, 754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	232, 1023, 1032, 1207, 1265
HpyF3I	CTNAG	7 cut(s)	75, 81, 141, 369, 469, 712, 952
HpySE526I	ACGT	2 cut(s)	595, 754
HspAI	GCGC	2 cut(s)	496, 1363
Kzo9I	GATC	5 cut(s)	116, 172, 586, 772, 1117
LmnI	GCTCC	2 cut(s)	142, 1049
Lsp1109I	GCAGC	1 cut(s)	930
LweI	GCATC	3 cut(s)	145, 403, 527
MaeI	CTAG	2 cut(s)	294, 1182
MaeII	ACGT	2 cut(s)	595, 754
MaeIII	GTNAC	8 cut(s)	40, 67, 439, 670, 892, 1081, 1132, 1177
MalI	GATC	5 cut(s)	118, 174, 588, 774, 1119
MboI	GATC	5 cut(s)	116, 172, 586, 772, 1117
MboII	GAAGA	3 cut(s)	280, 347, 376
MflI	RGATCY	1 cut(s)	586
MluCI	AATT	6 cut(s)	425, 849, 1042, 1092, 1151, 1165
MmeI	TCCRAC	2 cut(s)	31, 959
MnlI	CCTC	8 cut(s)	150, 237, 316, 489, 600, 798, 1095, 1304
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	2 cut(s)	407, 783
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	943
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	3 cut(s)	342, 724, 1236
MvaI	CCWGG	2 cut(s)	342, 1236
MvnI	CGCG	1 cut(s)	1365
MwoI	GCNNNNNNNGC	5 cut(s)	232, 1023, 1032, 1207, 1265
NciI	CCSGG	1 cut(s)	724
NcoI	CCATGG	1 cut(s)	263
NdeI	CATATG	2 cut(s)	149, 1030
NdeII	GATC	5 cut(s)	116, 172, 586, 772, 1117
NheI	GCTAGC	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	3 cut(s)	40, 1081, 1177
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	1039
PaeI	GCATGC	1 cut(s)	1039
PfeI	GAWTC	2 cut(s)	743, 906
PkrI	GCNGC	3 cut(s)	942, 945, 1352
Ppu21I	YACGTR	1 cut(s)	596
PshAI	GACNNNNGTC	2 cut(s)	371, 1018
Psp6I	CCWGG	2 cut(s)	340, 1234
PspFI	CCCAGC	2 cut(s)	193, 431
PspGI	CCWGG	2 cut(s)	340, 1234
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	4 cut(s)	260, 533, 725, 1291
PstI	CTGCAG	1 cut(s)	1013
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	407, 783
SatI	GCNGC	3 cut(s)	941, 944, 1351
Sau3AI	GATC	5 cut(s)	116, 172, 586, 772, 1117
Sau96I	GGNCC	4 cut(s)	260, 533, 725, 1291
ScrFI	CCNGG	3 cut(s)	342, 724, 1236
SfaNI	GCATC	3 cut(s)	145, 403, 527
SfcI	CTRYAG	1 cut(s)	1009
SinI	GGWCC	2 cut(s)	260, 1291
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	480, 988
SmoI	CTYRAG	2 cut(s)	480, 988
SnaBI	TACGTA	1 cut(s)	596
SphI	GCATGC	1 cut(s)	1039
Sse9I	AATT	6 cut(s)	425, 849, 1042, 1092, 1151, 1165
SsiI	CCGC	5 cut(s)	47, 903, 941, 1348, 1351
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	2 cut(s)	294, 1182
StyD4I	CCNGG	3 cut(s)	340, 722, 1234
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	40, 627
TaiI	ACGT	2 cut(s)	598, 757
TaqI	TCGA	4 cut(s)	358, 775, 1056, 1339
TasI	AATT	6 cut(s)	425, 849, 1042, 1092, 1151, 1165
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	2 cut(s)	943, 1353
TfiI	GAWTC	2 cut(s)	743, 906
Tru1I	TTAA	2 cut(s)	407, 783
Tru9I	TTAA	2 cut(s)	407, 783
TscAI	CASTG	3 cut(s)	632, 877, 1217
TseFI	GTSAC	3 cut(s)	40, 1081, 1177
TseI	GCWGC	1 cut(s)	943
Tsp45I	GTSAC	3 cut(s)	40, 1081, 1177
TspDTI	ATGAA	4 cut(s)	175, 323, 811, 827
TspGWI	ACGGA	2 cut(s)	1124, 1273
TspRI	CASTG	3 cut(s)	632, 877, 1217
VpaK11BI	GGWCC	2 cut(s)	260, 1291
XagI	CCTNNNNNAGG	1 cut(s)	1125
XapI	RAATTY	3 cut(s)	425, 1092, 1165
XceI	RCATGY	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	544
XspI	CTAG	2 cut(s)	294, 1182
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.